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Journal club on the Node

Figure 1 Schematic of the clock model as proposed by Thorogood (1991). (A) The bold arrow represents the timing of the AER-to-AF transition in the developmental process. (B-D) Hypothesized representations of fin/limb development in the clock model (above) with endochondral skeletal patterns of the fin/limb (below,). (B) Fin development in a teleost, demonstrating a short period of time with AER signaling prior to the AER-to-AF transition.   (C) Fin development in lobe-finned fishes, showing a longer relative time with AER signaling prior to AF transformation. (D) Limb development in a tetrapod, in which AER signaling persists throughout limb development. Figure modified from Yano et al. [3]; based on Thorogood [2]; with fossil form representations in C-D from Long et al. [4].

If I could turn back time: an embryological look at the fin-to-limb transition

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Stem Cells in Developmental Biology: a debate at the BSDB

On how odd critters can answer important questions

Virtual nanoscopy

Posted by on August 21st, 2012

Let’s take a very close look at the inside of a fish!

A recent paper in the Journal of Cell Biology describes a technique for generating large, composite, images from electron microscopy data. Frank Faas, Raimond Ravelli, and colleagues at the Leiden University Medical Center developed a method to computationally collect and align EM images. In the data viewer accompanying the paper, they show a large section of a zebrafish embryo, 5 days post-fertilisation, which is comprised of 26,434 individual images! The total size of the composite image is 921,600 pixels by 380,928 pixels. (For reference, the screenshots below are 500 pixels wide.)

In these screenshots you can see the overall fish in the bottom right, with the red area indicating where the larger, detailed, view is located. These are two different magnifications of the (edge of the) eye. In the bottom image you can also see the edge of the composite image, and appreciate how many individual images there are, and how well they connect.





To find out more about the method, and its practical applications, read the full paper and editorial at JCB.

ResearchBlogging.orgFaas FG, Avramut MC, M van den Berg B, Mommaas AM, Koster AJ, & Ravelli RB (2012). Virtual nanoscopy: Generation of ultra-large high resolution electron microscopy maps. The Journal of cell biology, 198 (3), 457-69 PMID: 22869601
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  1. Jon Moulton says:
    Thanks Eva - very nice!


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