The community site for and by
developmental and stem cell biologists

Jonas Hartmann

Systems biologist studying the principles of self-organization at the interface of cell and developmental biology.

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Posts by Jonas Hartmann

A short rant on the present and future of developmental biology

Posted by , on 11 September 2024

Observing a cluster of migrating cells or a developing embryo through the lens of a microscope can be a visceral experience; one is struck by the ephemeral beauty, layered complexity, ...

From Image to Insight – Morphogenesis Meets Data Science

Posted by , on 26 September 2020

A wave of innovations is advancing data-driven computational analysis and machine learning – time for developmental biologists to hop on the surf board! This post, inspired by our recent data-driven ...

Recent comments by Jonas Hartmann

If you are a biologist and would like to dip your feet in image analysis and data science (perhaps in preparation for taking a deep dive), the following links may be of interest to you. They are all based on python, as python is easy to learn and broadly applicable! General python: - For beginners with no programming experience: https://swcarpentry.github.io/python-novice-gapminder - For those with a little bit of experience looking to learn more based on a practical application (data analysis on arthritis inflammation): https://swcarpentry.github.io/python-novice-inflammation Image analysis: - General introduction: https://datacarpentry.org/image-processing - Biology-focused introduction: https://github.com/WhoIsJack/python-bioimage-analysis-tutorial Data science: - Collection of tutorials: https://scikit-learn.org/stable/tutorial/index.html (With thanks to Toby Hodges from the Carpentries for distilling the many great materials online down to these key starting points.)
by Jonas Hartmann in From Image to Insight – Morphogenesis Meets Data Science on September 28, 2020