Company of Biologists Workshop – Growth, Division and Differentiation – Day 2

Posted by on September 26th, 2011

-By Nitin Sabherwal, Eugen Nacu, Heike Laman, Irene Gutierrez Vallejo and Anna Kicheva

The second day of the workshop has finished and it is the reporting time now.

We had a wonderful day with fantastic talks and a nice walk around the area. The weather had also been beautifully supportive for these kinds of excursions and this added to the joy of walking around such a splendid place.

The first session on the second day had talks with the general question and theme- is it possible to control the cell fate decisions, particularly in context of neural development, by manipulating/controlling the cell cycle?

The session started with a talk by Philipp Kaldis who investigated the brain of CDK2/CDK4 double knock out (DKO) mice embryos. He found that the brain of these mice showed similar gross structures as the normal brain from control mice, however, the cortical plate and the intermediate zone areas showed reduced thickness indicating reduced differentiation, while the subventricular zone and the ventricular zone containing progenitors were largely unaffected. His work conveyed 2 important points:

1)   in the absence of CDK2 and CDK4, cyclinD will pair up with CDK1 and CDK6 instead.



2)   CDK2 and CDK4 have an effect on differentiation of neural stem cells. The effect is mediated by a change in the length of cell cycle and potentially by a direct effect of CDK2 and CDK4 on differentiation.

In the second talk, Federico Calegari, followed up on the theme of “cell cycle length (particularly the length of the G1 phase) being a determinant of cell fate during division of neural stem cells in the developing mouse brain”.  He started by describing the process of neurogenesis in mice, which follows thepath: apical progenitor -> basal (intermediate) progenitor -> neuron. He followed with explanation of previous work that supported this idea; work which showed that:

1) the G1 length of neural progenitors increases during development

2) cortical areas with higher neurogenesis have a longer G1 than proliferating progenitors

3) an artificial lengthening of G1 induces premature differentiation.

4) shortening of G1 by CDK4 and cyclinD1 inhibits neurogenesis and promotes the expansion of basal progenitors during embryonic development

And finally he showed the amazing results that it is possible to conditionally control the expansion of NSC in the adult mouse brain by temporarily overexpressing CDK4 and cyclinD1 (called 4D), which would initially expand the progenitor pool and then, after stopping the 4D overexpression by genetic manipulation, the expanded pool would eventually differentiate into the neurons. In essence, this new system allows the increase of neuron number in the adult hippocampus, which may have important implications for understanding the role of adult neurogenesis in cognitive function and controlling this process for therapy of neurodegenerative diseases

So we found out that controlling cell cycle length by CDKs and cyclins influences fate decisions in neural progenitors. But the next bigger question becomes- what is downstream of these Cyclin/Cdk molecules responsible for the fate change? And here came Anna Philpott’s insightful talk to our rescue.She looked at the posttranslational modifications of Neurogenin2 which drives neurogenesis. Neurogenin2 has multiple sites for phosphorylation and these different sites show different sensitivity to Cyc/CDK levels, with more sites being phosphorylated at a higher level of CDK. These phosphorylations were shown to negatively affect the stability of Neurogenin promoter binding in a cumulative fashion. Anna nicely showed that the efficiency of Neurogenin2 induction of neuronal markers is inversely proportional to the number of phosphorylated residues.

Linking the data together from Federico’s and Anna’s work, it is tempting to speculate that CDK4 and cyclinD1 induce proliferation of basal progenitors by decreasing the activity of Neurogenin2 and similar differentiation factors.

The last talk of the session was from Kristen Kroll who talked about the role of Geminin in setting up the epigenetic landscape for neural fate acquisition. Kris has long standing interests in how neural fate acquisitionis regulated by Geminin, which she cloned long time back in Mark Kirschner’s lab, as a regulator of both neurogenesis and cell cycle.  Kris nicely showed that knockdown of Geminin, a nuclear protein had no effect on the ability of ES cells to maintain or exit pluripotency, but when she overexpressed Geminin, it promoted neural fate acquisition, even in the presence of growth factors that normally antagonize neural induction. She followed this observation and showed that the mechanism behind Geminin’s ability for neural induction was due to its ability to maintain a hyperacetylated and open chromatin conformation at neural genes. She nicely showed that in ES cells, Geminin had the ability to enhance the histone acetylation on neural promoters and also it binds to the acetylated neural promoters and activate the expression of neural genes, leading to the neural fate acquisition caused by the Geminin overexpression. Thus Kris showed that Geminin functions as an intrinsic factor regulating the neural fate acquisition, by establishing an appropriate epigenetic signature on neural promoters.

During the Monday afternoon session we continued with two talks that link polarity and cell proliferation.  Dr. Helena Richardson presented her work in Drosophila eye imaginal discs about the role of lgl in proliferation.  lgl is a polarity protein that has been implicated in human cancers. Helena found that lgl mutant cells show an increase in proliferation without apparent defects in apical basal polarity. This proliferation mis-regulation is due to a perturbation of the Salvador/Warts/Hippo pathway, and she also presented her preliminary data on novel mechanisms that couple the polarity to the Hippo pathway.

Dr. Nancy Papalopulu spoke on her work on the early neural plate progenitor cells from Xenopus, In this system, cells with different apical-basal polarity properties showed different potentials for proliferation and differentiation. Her work shows that a membrane-bound, active form of aPKC, an apical polarity protein, is able to directly phosphorylate some components of the cell cycle regulatory machinery.  This caused protein destabilization with consequent effects on shortening the length of G1 phase, and promoting proliferation. She proposed that cell polarization is one mechanism that controls the length of the cell cycle, with consequent effects on the differentiation potential of the cells.

The fun (for scientists) continued in the evening with a mini grant writing session where five teams of randomly-paired discussants were asked to come up with a fundable proposal, that incorporated both team members expertise, in 15 minutes!! Proposals included microRNA regulation of oscillatory networks, proteomic screens on limb regeneration, uncovering links between patterning and proliferation, molecular requirements for NSC differentiation, and the importance of G2 phase.  Reflecting the current economic climate, none of the proposals was funded

 

 

 

 

 
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Stem cell research in Qatar

Posted by on July 11th, 2011

There’s an interesting interview in Nature News, with Abdelali Haoudi - the vice-president for research of the Qatar foundation. Qatar opened a biomedical research institute a few years ago, and is now looking to expand this with a stem cell institute.

The situation in Qatar is almost opposite of that of many other countries:  they have enough money to set up the institute, but not necessarily enough highly-skilled people to work there. They’ve sent six students abroad to learn about stem cells at top institutes, and expect them to come back to work in Qatar, but will they really all come back, or is this going to be a practical lesson in the risks of “brain drain”?

The interview also addresses the ethical aspects and Islamic views of stem cell research. The foundation organised a conference for Islamic scholars to determine the fatwa (official Islamic rules) concerning human embryonic stem cells, and they came up with a set of well-defined rules: “We can use tissues from embryos for up to 14 days after fertilization. We have to get the consent of the parents. We cannot create embryos specifically for research, and we cannot use the tissues for commercial purposes — only for basic research or to develop new therapies”, explains Haoudi.

Have a look at the entire interview.

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Help me select some Node highlights

Posted by on May 17th, 2011

The Node’s birthday is coming up on June 22nd and we’re currently preparing some things for that behind the scenes.

One thing that I’m working on are a few slideshows to present this summer at departments and conferences. In these presentations, I want to include some highlights from the Node’s first year, and I could use some help finding those. I could include my own favourites, but I’d rather hear what you liked, so tell me, please: what was the best thing you’ve seen on the Node all year? Favourite posts, favourite topics, favourite parts of the site, or any other comments are all welcome.

Have a look at the archives in the sidebar or the intro page for inspiration and reminders of what was on the site a few months ago. So many memories already…

Thanks for helping out!
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Map of Life: A guide to convergent evolution

Posted by on May 4th, 2011

The Map of Life is a recently published guide to convergent evolution produced by the University of Cambridge that has been touring science festivals and events across the world. It contains hundreds of article about structures and adaptations that have evolved independently in unrelated organisms such as camera eyes in jellyfish and snails to gliding in lizards and mammals.

This project is co-ordinated by the Professor of Evolutionary Palaeobiology, Simon Conway Morris in the Department of Earth Sciences. Professor Conway Morris and his team have spent several years on the project and the depth of the Map of Life really reflects this. The articles are all interlinked to each other, making it less of a list of convergent adaptations and more of a well linked database. I found myself wandering from camera eye evolution (they evolved 7 times!) to cognition in birds!

Map of  Life Homepage

All the information presented here comes from peer reviewed journals and other scientific literature. Although this seems primarily aimed at students and academics it is written in a way that also makes it accessible to members of the public (with some basic understanding of science).

The Map of Life does a great job in showing off the beauty (and laziness!) of evolution and how it arrives at the same or similar adaptations independently. It also tells us that evolution can be predictable when faced with similar environmental or selective pressures and interestingly, could also give us some clues about how life could evolve on other planets or moons.

The main message that the Map of Life presents is that evolution is true. Whilst there are may proponents of evolution, what really separates this message from others is that it is funded by the John Templeton Foundation, an organisation that aims to align science and religion. Whilst this organisation has been at the centre of controversy recently, it is quite refreshing to see them displaying the marvels of evolution with a resource that is so accessible and absorbing.

Links:

Map of Life - http://www.mapoflife.org
Map of Life on Facebook - http://www.facebook.com/mapoflife
Press release from Cambridge University - http://www.admin.cam.ac.uk/news/dp/2011030302
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Science – The Bigger Picture

Posted by on May 1st, 2011

This is a retelling of the student and post-doc workshop from the second day of the BSDB/BSCB joint spring meeting that took place in Canterbury at the University of Kent. The session emphasised the need for accurate science and scientific involvement in public communication. It ended up a bit longer than I’d intended, but this is something I’m really enthusiastic about and felt it needed to be shared in detail. I hope you find it helpful.




Panellists:

Dr Peter Wilmshurst – A consultant cardiologist, known for his refusal to falsify or withhold data in pharmaceutical studies. He was being sued for libel and slander by NMT medical until the company entered liquidation in April.

Rose Wu – A representative for the charity Sense about Science which works tirelessly despite limited funding to improve the public image of science, aids accurate reporting of scientific issues in the media and campaigns for further government support for research.

Dr Jenny Rohn – A UCL post-doc by day. Also known for her punditry, she runs the popular science communication website lablit.com has been interviewed numerous times for tv and radio. She has published numerous stories and editorials and two fictional novels Experimental Heart and The Honest Look, communicating science through the engaging and emotional personal lives of scientists. She was also central to the campaign to save UK science funding.

Read the rest of this entry »
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Stem cell patent case could have far-reaching impact

Posted by on April 28th, 2011

Last month, the advocate-general of the European Court of Justice gave his opinion on a long-running legal debate about a patent filed several years ago in Germany. If the Court follows his recommendation, patenting of applications using embryonic stem cells will be prohibited on moral grounds.

13 leaders of major stem cell projects in Europe responded to the advocate-general’s statement with an open letter published in Nature this week. They express serious concerns about the impact of a patenting ban on European research.

http://www.eurostemcell.org/stem-cell-patentsEuroStemCell, Europe’s stem cell hub, has collected comments and information about this case on its Stem cell patents topic page. Visit the site to read the open letter and find out more about the case.

Post a comment on the site, or add your signature to the letter if you wish: http://www.eurostemcell.org/stem-cell-patents
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Don’t forget about the big picture

Posted by on April 20th, 2011

Live organisms are complex systems. Understanding the complexity underlying the development and growth of organisms seems a daunting task, but developmental biology is an essential field of study to accomplish, at least a little, this task.

Previously to begin my Ph.D. research project in a developmental biology laboratory, I was as an undergrad with an advisor working in the fascinating world of stem cells. I was convinced that stem cell biology was also developmental biology, only at another level of organization or complexity. How a stem cell can give rise to a differentiated cell type, leading to the development of a tissue is also a developmental question. After all, embryos are made from cells. But now, working with a scientist interested in the development of Xenopus, now I believe that answering questions regarding embryological development is also a part of a bigger question. How organisms can structure into populations, how they interact with members of its same species, or with different species, has something of developmental as well. It is a new “specified state of growth or advancement”.

But, honestly, myself and, I bet, many of my fellows don’t think often about this higher level of development. We usually close inside our questions. How my gene A makes that this group of cells migrate from the point X to the point Y to allow the embryo to develop into some Z stage in the condition B may seem interesting (actually, it is), but often it seems the only thing important. I left the lab, in February, to go on vacations, thinking about this, thinking about how our field can fall into reductionism, into the paradigm of genes specifying stages and structures, and forgetting that once that structure is formed, one of the main purposes is to allow the embryo (or the adult organism) to interact with the surrounding environment. My intention was to visit San Pedro de Atacama, a peaceful, quiet and beautiful place in Chile, well known by international tourist as a top destination and by the archaeological importance and because is placed in one of the most dry and arid deserts in the world. You can imagine that life is impossible in a place without water, with extremely high levels of salt and other toxic chemical compounds, with extreme high temperatures during the day and extremely low temperatures in the night. It is possible that the same developmental processes that allows a frog to survive in a wetland, could allow to some organism to survive in these extreme conditions? Or are different developmental processes involved?

Just to remember the bigger picture, that our model organisms actually are part from a higher level of complexity, I wanted to share these thoughts. These pictures are from some animals that manage to survive in some extreme conditions. For example, it is surprising to see a fox in the middle of the “Salar de Atacama” (Atacama Salt Lake), in which you can’t see superficial water of plants around you in kilometers. Some lizards, birds, and some other animals above 4.000 meters, together with just one or two plant species. This incredible display of life in hard conditions remembers you the big picture. Quoting Gilbert & Sarkar: “If the sciences of the twenty-first century will be characterized by an analysis of complexity, then developmental biology should be at its forefront. Our science should be mature enough to embrace the complexity of developing organisms”.


It is amazing how life can survive in hard, even extreme, conditions. (A) The environment. Atacama Salt Lake, the third largest in the world and one of the most arid and dry (according some records, it is the place on Earth with less rain). (B) Artemia (Brine shrimp) growing in small water deposits. They serve as food to Flamingoes (D). In (C), a lizard walking nearby to the water deposit in (B). In (E), extremophiles growing on the rock in sulfur-containing water deep holes in a geothermal park. (F) A fox walking in the middle of the Atacama Salt Lake.

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YEN Seminar Next Week – March 24

Posted by on March 17th, 2011



We are delighted to announce the first double-seminar session hosted by the Young Embryologist Network (http://www.ucl.ac.uk/cdb/yen) on March 24th from 4pm – 6pm (& refreshments afterwards) in the A.V. Hill Lecture Theatre, Medical Sciences Building, UCL. The theme of this session is visualising biological processes and there will be 2 speakers:

Dr Florencia Cavodeassi (Steve Wilson Group, Dept of Cell and Developmental Biology, UCL).
Title TBC.

- Professor Scott Fraser (Anna L. Rosen Professor of Biology & Engineering and Applied Science, Beckman Institute, Caltech, USA).

Title: “New tools for imaging the motions and fates of embryonic cells.”

This session is run by PhD and PostDocs in the Network (CDB, UCL, NIMR, ICH, KCL) but is open to everyone. Through these seminars and our annual meeting we hope to open lines of communication and create a diverse, interactive research community for PhD students, Post-Doc and PI embryologists. So please come along and become part of the Network.

Directions:
AV. Hill Lecture Theatre can be reached via the Anatomy Building on Gower Street or through the Medical Sciences building ( http://crf.casa.ucl.ac.uk/screenRoute.aspx?s=1178&d=115&w=False ).
The Anatomy building route is the following: Enter through the main entrance on Gower Street and walk up the central staircase to the first floor, enter through the door marked “Physiology” and along the corridor. AV. Hill is to your right at the end of the corridor through 2 sets of double doors.

——————

We look forwards to seeing you there!
Sorrel Bickley
YEM2011 Organising Committee
youngembryologistnetwork@gmail.com

Young Embryologist Network (Do you know about our annual meeting YEM2011 on May 6th? Check out our website)
http://www.ucl.ac.uk/cdb/yen/
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iPS or transdifferentiation

Posted by on March 2nd, 2011

The discovery of iPS made headlines the world over, and rightly so. But recently, transdifferentiation between somatic cell types has also been the focus of  considerable attention. A couple of Nature papers this year have reported that transdifferentiation is even possible between lineages arising from different germ layers - something that not everyone thought could be achieved (see Vierbuchen et al, Nature 463, 1035-1041 and Szabo et al, Nature 468, 521-526).

EuroStemCell aims to make this sort of cutting-edge scientific progress accessible to non-specialists, and to encourage discussion amongst the whole community. Thomas Graf has just written a short article on iPS versus transdifferentiation for eurostemcell.org. You can read the article at http://www.eurostemcell.org/commentary .

We’d love it if Node readers posted their opinions on the value and future of these two techniques as comments on the article. Just sign up to the site (a VERY simple, 2-minute process) and then go to Thomas Graf’s article and click ‘add a new comment’.
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Stem Cells versus Progenitors

Posted by on February 13th, 2011

With so much research focusing on stem cells, I’ve been wondering lately whether researchers are overlooking other important, multipotent cell groups, specifically what are called “progenitor” cells. But then another part of me wonders whether these two groups are so very different from each other. Technically, the main difference between stem cells and progenitors is their lifespan, with progenitors’ being much shorter, but the line here seems blurry; most adult stem cells cannot be cultured for extensive amounts of time before they differentiate or senesce.

I was reminded of the issue of stem cells versus progenitors by a paper that came out earlier this month in The Journal of Clinical Investigation that showed, surprisingly, that patients with androgenic alopecia (AGA), or male pattern baldness, had a normal number of hair stem cells in their scalps, but a depleted number of different hair progenitor cells. The progenitors now look like a likely culprit for AGA. It’s been well-studied how stem cells in hair follicles give rise to new hairs over time, and it’s known that progenitors derived from these stem cells play key roles in this process, but it had not been studied with relation to AGA previously. It’s possible that the stem cells in bald AGA scalps are somehow dysfunctional or inactivated, and this could cause the loss of progenitor cells, but it still needs to be looked into (If you’d like to read more detailed coverage of this paper, I wrote a technical blog post about it on my blog All Things Stem Cell and a layman article on it for my column Biology Bytes.)

I wonder what would have happened to this recent study if when the researchers had found out that the number of hair stem cells was the same in haired and bald scalps, they then moved on to investigating other, maybe non-cellular suspects, without looking at the progenitors. Perhaps they would have then discovered a molecular abnormality in the stem cells, and then suspected the downstream progenitor groups. I just can’t help but wonder how many other diseases and biological phenomena have been investigated with a primary focus on the stem cells involved, when in some cases the progenitors may be a better initial indicator for what’s changed in the system. Or maybe using the terms “stem cells” and “progenitors” is really splitting hairs; stem cells vary significantly in potency and proliferation capacity from group to group, so maybe we should just expand the already expansive term “stem cells” to encompass a broader range of cells. While I like to think that a cell type’s name doesn’t affect whether a researcher studies it, I’d imagine it’s easier to get funding for “stem cell” research than “progenitor cell” research (or, with some funding agencies it may be the other way around), and this may definitely affect a researcher’s focus with funding as tight as it is.
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