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Red fish, blue fish, Brainbow fish!

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Woods Hole Images round 3 – vote for a Development cover

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Interview with the BSDB Poster winner Aditya Saxena

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Gone today, hair tomorrow? Changes in dermal papilla cell number drive hair thinning and loss.

Postdoctoral Position in Cardiac Development

Posted by on May 8th, 2012

A postdoctoral position studying cardiac development (epigenetic regulation of cell lineage decisions) is available early 2013 in the INSERM team of Dr. Michel Pucéat at the University of Paris Descartes. The laboratory offers a competitive interactive environment with a strong research in early normal and pathological cardiac biology of development. It has numerous collaborations and joined grants with leader laboratories in cardiac biology of development in USA and Europe. Work conducted in the laboratory includes epigenetics, genetics and developmental biology (stem cells and mouse embryos) to study normal and abnormal cardiac development.  We are looking for a motivated and enthusiastic candidate who will carry out an independent research project aimed at understanding genetic and epigenetic (higher order chromatin structure) regulations of three cell fate decisions in the course of cardiac development. Applicants should be highly enthusiastic and have recently completed doctoral or postdoctoral training in Developmental Biology (mouse or zebrasfish embryos). Training in Epigenetic concepts and technologies (ChIP, ChIP-loop, 3C…) will be appreciated.

The position is well funded within the frame of a France-USA Research network of excellence. However, the candidate is expected to have a competitive CV and will be encouraged to apply for independent fellowships (EMBO, Young Investigator award of a USA-France research Foundation, INSERM postdoctoral programmes…).  Both foreign and French candidates are encouraged to apply.

Please send CV with a resume of your research interest, and names of 3 references to: michel.puceat@inserm.fr
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Sunday at The EMBO Meeting – (Mis)folding proteins and an entire session on blastocysts!

Posted by on September 12th, 2011

Here’s my brief roundup of day two at The EMBO Meeting.

It started with Susan Lindquist’s excellent talk on how cells react to stress by synthesising lots of new heat-shock proteins, which help proteins to fold properly. Susan discussed Hsp90 in more detail. It’s a highly specific protein chaperone, helping diverse signalling proteins to fold. Hsp90 is expressed at levels about 10 times higher than required, and thereby serves as a buffer for genetic variation: In Drosophila, removal of one copy of Hsp90 uncovered effects of hidden genetic variation - about 1% of the flies had developmental defects, depending on their genetic backgrounds. The same was true for Arabidopsis. Susan presented a lot more fascinating data on the inheritance of environmentally acquired traits via prions, and you can find a short film on her here.

I then attended the afternoon session, “Balancing potency and specification in the embryo”, which was opened by Janet Rossant. She presented her lab’s work on the role of the Hippo pathway in the specification of trophoblast and inner cell mass. Next was Wolf Reik, who talked about the profiles of methylation and hydroxymethylation in ES cells. Miguel Manzanares compared the embryonic pluripotency network in chick and in mouse, concluding that it is an evolutionarily young concept in mammals. Next was Claire Chazaud’s study on a later step in pre-implantation development, primitive endoderm differentiation. Takashi Hiiragi and his lab have developed an impressive live-imaging system to track cell behaviour and address stochasticity in gene expression in pre-implantation mouse embryos. Finally, Alfonso Martinez Arias talked about the regulation of the pluripotency network and how this modulates the balance between self-renewal and differentiation of mouse ES cells. After the session I had a chance to interview Janet Rossant, keep an eye out for it here on The Node!

In the evening I went to the Scientific Publishing Session, where Bernd Pulverer presented his thoughts and ideas on the future of scientific publishing. If you ever have a chance to go to one of his talks, take the opportunity - it’s definitely interesting and thought-provoking!
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In Development this week (Vol. 138, Issue 1)

Posted by on December 7th, 2010

The first issue of 2011 is out now…here are the highlights:

Geminin control of lineage commitment


The transition between pluripotency and multi-lineage commitment during early embryogenesis must be closely regulated to ensure correct spatial and temporal patterning of the embryo. But what regulates this crucial transition? According to Kristen Kroll and co-workers, part of the answer to this question in Xenopus embryos lies with the nuclear protein Geminin (see p. 33). The researchers show that Geminin overexpression represses many genes associated with cell commitment but increases the expression of genes that promote pluripotent and immature neuroectodermal cell fates. Geminin, they report, represses Activin-, FGF- and BMP-mediated cell commitment. Consistent with this finding, Geminin knockdown enhances commitment responses to growth factor signalling and results in ectopic mesodermal, endodermal and epidermal fate commitment in the embryo. The researchers also report that repression of commitment by Geminin depends on Polycomb repressor function, and show that Geminin promotes Polycomb-mediated repressive histone modifications of mesodermal genes. The researchers propose, therefore, that cooperativity between Geminin and Polycomb plays an essential role in controlling spatial and temporal patterning in early embryos.



Rock-ing between AP and LR axes


The vertebrate body plan features a left-right (LR) asymmetry, but how the LR axis is orientated correctly with respect to the anteroposterior (AP) and dorsoventral (DV) axes is not known. Here, Jeffrey Amack and co-workers (p. 45) report that the Rho kinase Rock2b links AP patterning to LR patterning in zebrafish embryos. During development, Kupffer’s vesicle (KV) generates a cilia-driven leftward fluid flow that directs LR patterning. The authors demonstrate that depletion of rock2b in whole embryos or in the KV cell lineage alone disrupts asymmetric gene expression during development and perturbs organ asymmetries. They show that, in control embryos, ciliated cells are distributed asymmetrically along the AP axis of the KV and generate asymmetric fluid flow. By contrast, rock2b knockdown embryos show defective KV patterning and cell morphology, and a loss of directional flow. Based on their studies, the authors propose that Rock2b is required for the AP positioning of ciliated cells within the KV and for subsequent LR patterning in zebrafish embryos.



Mesp2 Notches up somite polarity


Somites, the most obviously segmented structures in vertebrate embryos, are subdivided into anterior (rostral) and posterior (caudal) compartments. Repression and activation of Notch signalling are essential for the establishment of the rostral and caudal compartments of the somite, respectively. The mechanism by which Notch is repressed has remained elusive but, on p. 55, Yumiko Saga and colleagues identify the bHLH transcription factor Mesp2 as a novel negative regulator of Notch signalling in mouse somites. In the absence of Mesp2, somites are completely caudalised but, intriguingly, the researchers now show that the introduction of a dominant-negative form of Rbpj (a downstream effector of Notch signalling) into the Mesp2 locus largely rescues the segmental defects of Mesp2-null mice. They also report that Mesp2 represses Notch signalling independently of its function as a transcription factor by inducing the destabilisation of mastermind-like 1, a core regulator of the Notch signalling pathway. These new findings shed light on the molecular mechanisms that control the rostrocaudal patterning of somites.



Cdx1: refining the hindbrain


During embryogenesis, the vertebrate hindbrain is segmented along its anteroposterior axis into lineage-restricted compartments, known as rhombomeres (r1-r8), that dictate subsequent neural patterning. The signals that pattern the hindbrain are known, but how each rhombomere-specific gene expression pattern is established is unclear. On p. 65, Sabine Cordes and colleagues reveal that the homeobox protein Cdx1 patterns the mouse hindbrain by spatially restricting the expression of the transcription factor MafB. Mafb is required for r5 and r6 development, and its expression is restricted to these segments. The authors report that the Mafb enhancer contains candidate Cdx-binding sites, and that Cdx1 binds to these sites both in vitro and in vivo. They show that Cdx1 is expressed at the r6/r7 boundary, at the posterior limit of the Mafb-expressing domain. Importantly, in the absence of Cdx1, MafB expression extends beyond its normal r6/r7 boundary. The authors propose that Cdx1 acts as an early and transient repressor of Mafb, and thus plays a role in refining hindbrain identity.



Boc: novel roles in Shh regulation


Hedgehog (Hh) signalling gradients control many developmental processes and are influenced by numerous positive and negative regulators. The transmembrane protein Brother of Cdo (Boc) has been implicated in Sonic hedgehog (Shh)-mediated commissural axon guidance in the CNS, but how Boc affects the cellular Hh response in vivo is unclear. Here, Rolf Karlstrom and colleagues reveal that Boc is cell-autonomously required for Hh-mediated ventral CNS patterning in zebrafish (see p. 75). The umleitung (uml) zebrafish mutant is characterised by defects in retinotectal projections. The researchers show first that uml encodes Boc. Then, by analysing the phenotypes of uml mutants, they show that Boc is a positive regulator of Hh signalling in the spinal cord, hypothalamus, pituitary, somites and upper jaw, but that Boc might be a negative regulator of Hh signalling in the lower jaw. Overall, these results reveal a role for Boc in ventral CNS cells that receive high levels of Hh, and uncover novel roles for Boc in vertebrate development.



Expanding the zebrafish toolkit


The zebrafish genetics toolkit has been missing a particularly handy piece of kit: a promoter to drive ubiquitous transgene expression throughout development, equivalent to the Rosa26 locus used in mouse genetics. But no longer, for in one of Development’s inaugural Technical papers (p. 169), Leonard Zon and co-workers report that the zebrafish ubiquitin (ubi) promoter can drive constitutive transgene expression throughout development. The authors initially identified ubi in BLAST searches using human ubiquitin. They then tested a 3.5 kb 5’ region upstream of its translational start site for transcriptional regulatory sequences and found that it drives strong and ubiquitous EGFP expression within 4 hours of injection into a single-cell embryo. Moreover, in stable ubi-EGFP transgenic lines, EGFP is strongly expressed in all external and internal organs they analysed, in all blood cell types, and from embryo to adulthood. The authors also created inducible ubi-driven CreERt2 transgenes and loxP lineage-tracer transgenes that give strong reporter activity upon Cre exposure, which further enhances and expands the zebrafish transgenesis toolkit.


To find out more, and to read the first author’s “behind the scenes” account of this work, see the related post on the Node

Plus…



The origin of ES cells has been debated in recent years. Jenny Nichols and Austin Smith now propose that there are, in fact, two possible routes by which ES cells can arise that are dictated by culture conditions.

See the Hypothesis article on p. 3





The Hippo pathway regulates growth in Drosophila and vertebrates, and, as Georg Halder and Randy Johnson now discuss, recent studies have shed light on how it governs organ size control and regeneration, and on how it is dynamically regulated during development.

See the Review article on p. 9.




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