Hero image 1
The community site for and by
developmental and stem cell biologists
  1. Home
  3. how to
Displaying posts with the tag: is_archive
Clear filters

Experimenting with non-anonymous peer review

Posted by , on 3 February 2019

Last year, I started to experiment with signing my reports for peer review of manuscripts, inspired by other people on twitter (@kaymtye, @AndrewPlested who in turn were inspired by Leslie ...
Read more

Visualizing the heterogeneity of single cell data from time-lapse imaging

Posted by , on 12 December 2018

When we examined the kinetics of Rho GTPase activity in endothelial cells in response to receptor stimulation (Reinhard, 2017), we noticed considerable cell-to-cell heterogeneity. In the original work we published ...
Read more

Make a difference: the alternative for p-values

Posted by , on 8 October 2018

Calculation and reporting of p-values is common in scientific publications and presentations (Cristea and Ioannidis, 2018). Usually, the p-value is calculated to decide whether two conditions, e.g. control and treatment, ...
Read more

Showing distributions

Posted by , on 6 August 2018

When reading about co-evolution of prey and predators, I stumbled across a cute new plot type: a half boxplot, half dot plot to show data distributions.     Wilson used ...
Read more

Visualizing data with R/ggplot2 - One more time

Posted by , on 26 June 2018

Experiments are rarely performed in isolation. Usually, several conditions are compared in parallel or sequential experiments. This experimental strategy also applies to time-dependent data, e.g. from timelapse imaging. So, naturally, ...
Read more

Visualizing data with R/ggplot2 - It’s about time

Posted by , on 31 May 2018

The visualization of temporal data by line graphs has been documented and popularized by William Playfair in the 18th century (Aigner et al, 2011; Beniger and Robyn, 1978). Today, time-dependent changes ...
Read more

Venn, Euler, upset: visualize overlaps in datasets

Posted by , on 25 May 2018

Visualizations for comparing datasets is a topic in all my data viz classes. Current solutions for comparing 2,3, 4 and more datasets are diverse and some are controversial. A one-fits-all ...
Read more

A better bar

Posted by , on 18 April 2018

After leaving the bar, what are we to do? I propose to move on to a better bar (and I hope that you will not be disappointed when you find ...
Read more

A tribute to parrots

Posted by , on 5 April 2018

In a previous blog, I have disgraced parrots by associating them with P-values and discrediting them for their mechanic repetition. Nevertheless, I admire the vivid colours of these multifaceted birds. ...
Read more

Conformation of the insulin receptor

Posted by , on 5 March 2018

A few days back over dinner at a CNV gathering, Theresia Gutmann from the Coskun lab casually told me about her PhD work. In collaboration with the Rockefeller University NYC, ...
Read more

Navigate the archive

Here you can filter posts by date, category or popular tags.  You can also use the search box.

Search Posts

Filter by date

Filter by category

Filter by tag

© 2024. The Company of Biologists Ltd | Registered Charity 277992
Registered in England and Wales | Company Limited by Guarantee No 514735
Registered office: Bidder Building, Station Road, Histon, Cambridge CB24 9LF, UK