We’ve trawled through bioRxiv and arXiv for developmental and stem cell biology (and related) preprints uploaded in April.

Use these links below to get to the section you want:

Developmental biology

• Patterning & signalling
• Morphogenesis & mechanics
• Genes & genomes
• Stem cells, regeneration & disease modelling
• Plant development
• Evo-devo

Cell Biology

Modelling

Tools & Resources

Research practice and education

Developmental biology

| Patterning & signalling

Contributions of the Dachsous intracellular domain to Dachsous-Fat signaling

Bipin Kumar Tripathi, Kenneth D. Irvine

Unravelling differential Hes1 dynamics during axis elongation of mouse embryos through single-cell tracking

Yasmine el Azhar, Pascal Schulthess, Marek J. van Oostrom, Wilke H.M. Meijer, Wouter M. Thomas, Marianne Bauer, Katharina F. Sonnen

The Drosophila EcR-Hippo component Taiman promotes epithelial cell fitness by control of the Dally-like glypican and Wg gradient

Colby K. Schweibenz, Victoria C. Placentra, Kenneth H. Moberg

Lateral cell polarization drives organization of epithelia in sea anemone embryos and embryonic cell aggregates

Tavus Atajanova, Emily Minju Kang, Anna Postnikova, Alivia Lee Price, Sophia Doerr, Michael Du, Alicia Ugenti, Katerina Ragkousi

Postsynaptic BMP signaling regulates myonuclear properties in Drosophila larval muscles

Victoria E. von Saucken, Stefanie E. Windner, Mary K. Baylies

Optogenetic control of Nodal signaling patterns

Harold M. McNamara, Bill Z. Jia, Alison Guyer, Vicente J. Parot, Caleb Dobbs, Alexander F. Schier, Adam E. Cohen, Nathan D. Lord

Scaling between cell cycle duration and wing growth is regulated by Fat-Dachsous signaling in Drosophila

Andrew Liu, Jessica O’Connell, Farley Wall, Richard W. Carthew

Morphogen gradients are regulated by porous media characteristics of the developing tissue

Justina Stark, Rohit Krishnan Harish, Ivo F. Sbalzarini, Michael Brand

Identification of Pappa and Sall3 as Gli3 direct target genes acting downstream of cilia signalling in corticogenesis

Shinjini Basu, Lena Mautner, Kae Whiting, Kerstin Hasenpusch-Theil, Malgorzata Borkowska, Thomas Theil

Non-canonical nuclear function of glutaminase cooperates with Wnt signaling to drive EMT during neural crest development

Nioosha Nekooie Marnany, Alwyn Dady, Frédéric Relaix, Roberto Motterlini, Roberta Foresti, Sylvie Dufour, Jean-Loup Duband

In vitro modelling of anterior primitive streak patterning with human pluripotent stem cells identifies the path to notochord progenitors

M. Robles-Garcia, C. Thimonier, K. Angoura, E. Ozga, H. MacPherson, G. Blin

Caspar determines primordial germ cell identity in Drosophila melanogaster

Subhradip Das, Sushmitha Hegde, Neel Wagh, Jyothish Sudhakaran, Adheena Elsa Roy, Girish Deshpande, Girish S Ratnaparkhi

The Wnt/β-catenin/TCF/Sp5/Zic4 gene network that regulates head organizer activity in Hydra is differentially regulated in epidermis and gastrodermis

Laura Iglesias Olle, Chrystelle Perruchoud, Paul Gerald Layague Sanchez, Matthias Christian Vogg, Brigitte Galliot

Cell wall-mediated maternal control of apical-basal patterning of the kelp Undaria pinnatifida

Eloise Dries, Yannick Meyers, Daniel Liesner, Floriele Gonzaga, Jakob Becker, Eliane E Zakka, Tom Beeckman, Susana M Coelho, Olivier De Clerck, Kenny A Bogaert

| Morphogenesis & mechanics

Mechanical forces pattern endocardial Notch activation via mTORC2-PKC pathway

Yunfei Mu, Shijia Hu, Xiangyang Liu, Xin Tang, Hongjun Shi

Spinal Cord Elongation Enables Proportional Regulation of the Zebrafish Posterior Body

Dillan Saunders, Carlos Camacho, Benjamin Steventon

Stored Elastic Bending Tension as a Mediator of Embryonic Body Folding

Mira Zaher, Ronit Yelin, Alaa A. Arraf, Julian Jadon, Manar Abboud Asleh, Sivan Goltzman, Lihi Shaulov, Dieter P. Reinhardt, Thomas M. Schultheiss

Application of tissue-scale tension to avian epithelia in vivo to study multiscale mechanical properties and inter-germ layer coupling

Panagiotis Oikonomou, Lisa Calvary, Helena C. Cirne, Andreas E. Welch, John F. Durel, Olivia Powell, Nandan L. Nerurkar

Topology changes of the regenerating Hydra define actin nematic defects as mechanical organizers of morphogenesis.

Yamini Ravichandran, Matthias Vogg, Karsten Kruse, Daniel Pearce, Aurelien Roux

Mechanical stress through growth on stiffer substrates impacts animal health and longevity in C. elegans

Maria Oorloff, Adam Hruby, Maxim Averbukh, Athena Alcala, Naibedya Dutta, Toni Castro Torres, Darius Moaddeli, Matthew Vega, Juri Kim, Andrew Bong, Aeowynn J. Coakley, Daniel Hicks, Jing Wang, Tiffany Wang, Sally Hoang, Kevin M. Tharp, Gilberto Garcia, Ryo Higuchi-Sanabria

Hemodynamics regulate spatiotemporal artery muscularization in the developing circle of Willis

Siyuan Cheng, Ivan Fan Xia, Renate Wanner, Javier Abello, Amber N. Stratman, Stefania Nicoli

From tension to buckling – a mechanical transition underlies the puzzle-shape morphogenesis of histoblasts in the Drosophila epidermis

Annafrancesca Rigato, Huicheng Meng, Claire Chardes, Adam Runions, Faris Abouakil, Richard S Smith, Loïc LeGoff

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis

Devon E. Mason, Paula Camacho, Megan E. Goeckel, Brendan R. Tobin, Sebastián L. Vega, Pei-Hsun Wu, Dymonn Johnson, Su-Jin Heo, Denis Wirtz, Jason A. Burdick, Levi Wood, Brian Y. Chow, Amber N. Stratman, Joel D. Boerckel

Mechanical Strategies Supporting Growth and Size Diversity in Filamentous Fungi

Louis Chevalier, Flora Klingelschmitt, Ludovic Mousseron, Nicolas Minc

Zebrafish arterial valve development occurs through direct differentiation of second heart field progenitors

Christopher J. Derrick, Lorraine Eley, Ahlam Alqahtani, Deborah J. Henderson, Bill Chaudhry

Regenerative clustering of Enteroblasts in the Drosophila midgut revealed by a morphometric analysis

Fionna Zhu, Michael J. Murray

Gestational exposure to high heat-humidity conditions impairs mouse embryonic development

Avinchal Manhas, Amritesh Sarkar, Srimonta Gayen

Differences in Cellular mechanics and ECM dynamics shape differential development of wing and haltere in Drosophila

C Dilsha, Salima Shiju, Neel Ajay Shah, Mandar M Inamdar, L S Shashidhara

Cell rearrangement progression along the apical-basal axis is linked with 3D epithelial tissue structure

Erika M Kusaka, Sassan Ostvar, Xun Wang, Xiaoyun Liu, Karen E Kasza

Tissue-level integration overrides gradations of differentiating cell identity in beetle extraembryonic tissue

Katie E. Mann, Kristen A. Panfilio

| Genes & genomes

Regulatory Functional Landscape of the HMX1 Gene for Normal Ear Development

Xiaopeng Xu, Qi Chen, Qingpei Huang, Timothy C. Cox, Hao Zhu, Jintian Hu, Xi Han, Ziqiu Meng, Bingqing Wang, Zhiying Liao, Wenxin Xu, Baichuan Xiao, Ruirui Lang, Jiqiang Liu, Qiang Li, Qingguo Zhang, Stylianos E. Antonarakis, Jiao Zhang, Xiaoying Fan, Huisheng Liu, Yong-Biao Zhang

ARID1A-BAF coordinates ZIC2 genomic occupancy for epithelial to mesenchymal transition in cranial neural crest lineage commitment

Samantha M. Barnada, Aida Giner de Gracia, Cruz Morenilla-Palao, María Teresa López-Cascales, Chiara Scopa, Francis J. Waltrich Jr., Harald M.M. Mikkers, Maria Elena Cicardi, Jonathan Karlin, Davide Trotti, Kevin A. Peterson, Samantha A. Brugmann, Gijs W. E. Santen, Steven B. McMahon, Eloísa Herrera, Marco Trizzino

XOL-1 regulates developmental timing by modulating the H3K9 landscape in C. elegans early embryos

Eshna Jash, Anati Alyaa Azhar, Hector Mendoza, Zoey M. Tan, Halle Nicole Escher, Dalia S. Kaufman, Györgyi Csankovszki

Expansion of a neural crest gene signature following ectopic MYCN expression in sympathoadrenal lineage cells in vivo

Rodrigo Ibarra-García-Padilla, Annika Nambiar, Thomas A. Hamre, Eileen W. Singleton, Rosa A. Uribe

Rapid response of fly populations to gene dosage across development and generations

Xueying C. Li, Lautaro Gandara, Måns Ekelöf, Kerstin Richter, Theodore Alexandrov, Justin Crocker

Detailed phenotyping of Tbr1-2A-CreER knock-in mice demonstrates significant impacts on TBR1 protein levels and axon development

Marissa Co, Grace K. O’Brien, Kevin M. Wright, Brian J. O’Roak

The miR-144/Hmgn2 regulatory axis orchestrates chromatin organization during erythropoiesis

Dmitry A. Kretov, Leighton Folkes, Alexandra Mora-Martin, Noreen Syedah, Isha A. Walawalkar, Kim Vanyustel, Simon Moxon, George J. Murphy, Daniel Cifuentes

Automated live-cell single-molecule tracking in enteroid monolayers reveals transcription factor dynamics probing lineage-determining function

Nike Walther, Sathvik Anantakrishnan, Gina M. Dailey, Robert Tjian, Xavier Darzacq

Compromised actin dynamics underlie the orofacial cleft in Baraitser-Winter Cerebrofrontofacial Syndrome with a variant in ACTB

Takayuki Tsujimoto, Yushi Ou, Makoto Suzuki, Yuka Murata, Toshihiro Inubushi, Miho Nagata, Yasuki Ishihara, Ayumi Yonei, Yohei Miyashita, Yoshihiro Asano, Norio Sakai, Hajime Ogino, Yasushi Sakata, Takashi Yamashiro, Hiroshi Kurosaka

Condensin IDC, H4K20me1, and perinuclear tethering maintain X chromosome repression in C. elegans

Jessica Trombley, Audry I Rakozy, Eshna Jash, Gyorgyi Csankovszki

SRSF2 is a key player in orchestrating the directional migration and differentiation of MyoD progenitors during skeletal muscle development

Rula Sha, Ruochen Guo, Huimin Duan, Qian Peng, Ningyang Yuan, Zhenzhen Wang, Zhigang Li, Zhiqin Xie, Xue You, Ying Feng

Testis- and ovary-expressed polo transcripts and gene duplications affect male fertility when expressed in the germline

Paola Najera, Olivia A Dratler, Alexander B Mai, Miguel Elizarraras, Rahul Vanchinathan, Christopher A. Gonzales, Richard P. Meisel

A dual enhancer-silencer element ensures transient Cdx2 expression during posterior body formation

Irène Amblard, Damir Baranasic, Benjamin Moyon, Boris Lenhard, Vicki Metzis

The DNA Methyltransferase DMAP1 is Required for Tissue Maintenance and Planarian Regeneration

Salvador Rojas, Paul G. Barghouth, Peter Karabinis, Néstor J. Oviedo

ScRNA-seq and scATAC-seq reveal that sertoli cell mediate spermatogenesis disorders through stage-specific communications in non-obstructive azoospermia

Shimin Wang, Hongxian Wang, Bicheng Jin, Hongli Yan, Qingliang Zheng, Dong Zhao

The cis-regulatory logic integrating spatial and temporal patterning in the vertebrate neural tube

Isabel Zhang, Giulia LM Boezio, Jake Cornwall-Scoones, Thomas Frith, Ming Jiang, Michael Howell, Robin Lovell-Badge, Andreas Sagner, James Briscoe, M Joaquina Delás

Does transcriptome of freshly hatched fish larvae describe past or predict future developmental trajectory?

Rossella Debernardis, Katarzyna Palińska-Żarska, Sylwia Judycka, Abhipsa Panda, Sylwia Jarmołowicz, Jan P. Jastrzębski, Tainá Rocha de Almeida, Maciej Błażejewski, Piotr Hliwa, Sławomir Krejszeff, Daniel Żarski

Dzip1 is dynamically expressed in the vertebrate germline and regulates the development of Xenopus primordial germ cells

Aurora Turgeon, Jia Fu, Divyanshi, Meng Ma, Zhigang Jin, Hyojeong Hwang, Meining Li, Huanyu Qiao, Wenyan Mei, Jing Yang

Defining the cellular origin of seminoma by transcriptional and epigenetic mapping to the normal human germline

Keren Cheng, Yasunari Seita, Eoin C. Whelan, Ryo Yokomizo, Young Sun Hwang, Antonia Rotolo, Ian D. Krantz, Maninder Kaur, Jill P. Ginsberg, Priti Lal, Xunda Luo, Phillip M. Pierorazio, Rebecca L. Linn, Sandra Ryeom, Kotaro Sasaki

Paralog-dependent Specialization of Paf1C subunit, Ctr9, for Sex Chromosome Gene Regulation and Male Germline Differentiation in Drosophila

Toshie Kai, Jinglan Zheng, Taichiro Iki

Sperm derived H2AK119ub1 is required for embryonic development in Xenopus Laevis

Jerome Jullien, Valentin Francois-Campion, Florian Berger, Maissa Goumeidane, Mami Oikawa, Romain Gibeaux

Genetic gradual reduction of OGT activity unveils the essential role of O-GlcNAc in the mouse embryov

Sara Formichetti, Agnieszka Sadowska, Michela Ascolani, Julia Hansen, Kerstin Ganter, Christophe Lancrin, Neil Humphreys, Matthieu Boulard

Maternal obesity may disrupt offspring metabolism by inducing oocyte genome hyper-methylation via increased DNMTs

Shuo Chao, Jun Lu, Li-Jun Li, Hong-Yan Guo, Kui-Peng Xu, Ning Wang, Shu-Xian Zhao, Xiao-Wen Jin, Shao-Ge Wang, Shen Yin, Wei Shen, Ming-Hui Zhao, Gui-An Huang, Qing-Yuan Sun, Zhao-Jia Ge

Developmental defects in ectodermal appendages caused by missense mutation in edaradd gene in the nfr mangrove killifish, Kryptolebias marmoratus

Hussein A. Saud, Paul A. O’Neill, Brian C. Ring, Tetsuhiro Kudoh

Myelin regulatory factor (Myrf) is a critical early regulator of retinal pigment epithelial development.

Michelle L Brinkmeier, Su Qing Wang, Hannah Pittman, Leonard Y Cheung, Lev Prasov

Heat tolerance, oxidative stress response tuning, and robust gene activation in early-stage Drosophila melanogaster embryos

Emily E. Mikucki, Thomas S. O’Leary, Brent L. Lockwood

| Stem cells, regeneration & disease modelling

Ascorbate depletion increases quiescence and self-renewal potential in hematopoietic stem cells and multipotent progenitors

Stefano Comazzetto, Daniel L. Cassidy, Andrew W. DeVilbiss, Elise C. Jeffery, Bethany R. Ottesen, Amanda R. Reyes, Sarah Muh, Thomas P. Mathews, Brandon Chen, Zhiyu Zhao, Sean J. Morrison

Circadian control of kidney regeneration via Lima1-mediated regulation of EMT

Xian He, Ziming Wang, Linxi Cheng, Han Wang, Yuhua Sun

Human receptive endometrial organoid for deciphering the implantation window

Yu Zhang, Rusong Zhao, Chaoyan Yang, Jinzhu Song, Peishu Liu, Yan Li, Boyang Liu, Tao Li, Changjian Yin, Minghui Lu, Zhenzhen Hou, Chuanxin Zhang, Zi-Jiang Chen, Keliang Wu, Han Zhao

Zebrafish Foxl2l suppresses stemness of germline progenitors and directs feminization

Chen-wei Hsu, Hao Ho, Ching-Hsin Yang, Yan-wei Wang, Ker-Chau Li, Bon-chu Chung

The transient formation of collaterals contributes to the restoration of the arterial tree during cardiac regeneration in neonatal mice

Rachel Sturny, Lucie Boulgakoff, Robert G Kelly, Lucile Miquerol

An Lgr5-independent developmental lineage is involved in mouse intestinal regeneration

Maryam Marefati, Valeria Fernandez-Vallone, Morgane Leprovots, Gabriella Vasile, Frédérick Libert, Anne Lefort, Gilles Dinsart, Achim Weber, Jasna Jetzer, Marie-Isabelle Garcia, Gilbert Vassart

Modelling Amoebic Brain Infection Caused by Balamuthia mandrillaris Using a Human Cerebral Organoid

Nongnat Tongkrajang, Phorntida Kobpornchai, Pratima Dubey, Nitirat Panadsako, Urai Chaisri, Kasem Kulkeaw

Transdifferentiation is uncoupled from progenitor pool expansion during hair cell regeneration in the zebrafish inner ear

Marielle O. Beaulieu, Eric D. Thomas, David W. Raible

Single-cell roadmap of cardiac differentiation identifies roles for ZNF711 and retinoic acid in balanced epicardial and cardiomyocyte lineage commitment

Rebecca R. Snabel, Carla Cofiño-Fabrés, Marijke Baltissen, Verena Schwach, Robert Passier, Gert Jan C. Veenstra

Sox9 marks limbal stem cells and is required for asymmetric cell fate switch in the corneal epithelium

Gabriella Rice, Olivia Farrelly, Sixia Huang, Paola Kuri, Ezra Curtis, Lisa Ohman, Ning Li, Christopher Lengner, Vivian Lee, Panteleimon Rompolas

Humanized in vivo bone marrow models orchestrate multi-lineage human hematopoietic cell development

Laurent Renou, Wenjie Sun, Chloe Friedrich, Klaudia Galant, Cecile Conrad, Evelia Plantier, Katharina Schallmoser, Linda Krisch, Vilma Barroca, Saryami Devanand, Nathalie Déchamp, Andreas Reinisch, Jelena Martinovic, Alessandra Magnani, Lionel Faivre, Julien Calvo, Leila Perie, Olivier Kosmider, Françoise Pflumio

Isogenic hiPSC models of Turner syndrome development reveal shared roles of inactive X and Y in the human cranial neural crest network

Darcy T. Ahern, Prakhar Bansal, Isaac V. Faustino, Heather R. Glatt-Deeley, Rachael Massey, Yuvabharath Kondaveeti, Erin C. Banda, Stefan F. Pinter

“Poly (A) Binding Protein 2 is critical for stem-progenitor differentiation during regeneration in the planarian Schmidtea mediterranea.”

Namita Mukundan, Nivedita Hariharan, Vidyanand Sasidharan, Vairavan Lakshmanan, Dasaradhi Palakodeti, Colin Jamora

foxg1a is required for hair cell development and regeneration in the zebrafish lateral line

Jon M Bell, Cole Biesemeyer, Emily M Turner, Maddie M Vanderbeck, Hillary F McGraw

Gill regeneration in the mayfly Cloeon uncovers new molecular pathways in insect regeneration

Carlos A. Martin-Blanco, Pablo Navarro, José Esteban-Collado, Florenci Serras, Isabel Almudi, Fernando Casares

A Multi-Tissue Comparison and Molecular Characterization of Canine Organoids

Christopher Zdyrski, Vojtech Gabriel, Oscar Ospina, Hannah Wickham, Dipak K. Sahoo, Kimberly Dao, Leeann S. Aguilar Meza, Abigail Ralston, Leila Bedos, William Bastian, Sydney Honold, Pablo Piñeyro, Eugene F. Douglass, Jonathan P. Mochel, Karin Allenspach

Braf-mutant Schwann cells divert to a repair phenotype to induce congenital demyelinating neuropathy

Elise Marechal, Patrice Quintana, Daniel Aldea, Grégoire Mondielli, Nathalie Bernard-Marissal, Mathias Moreno, Valérie Delague, Lauren A. Weiss, Anne Barlier, Heather C. Etchevers

Lgr5+ intestinal stem cells are required for organoid survival after genotoxic injury

Joseph Lee, Antoine Gleizes, Felipe Takaesu, Sarah F Webster, Taylor Hailstock, Nick Barker, Adam D Gracz

Stem cell models of TAFAZZIN deficiency reveal novel tissue-specific pathologies in Barth Syndrome

Olivia Sniezek Carney, Kodi William Harris, Yvonne Wohlfarter, Kyuna Lee, Grant Butschek, Arianna Anzmann, Steven M Claypool, Anne Hamacher-Brady, Markus Andreas Keller, Hilary J Vernon

Characterization of the mesendoderm progenitors in the gastrulating mouse embryo

V. Pragathi Masamsetti, Nazmus Salehin, Hani Jieun Kim, Nicole Santucci, Megan Weatherstone, Hilary Knowles, Jane Sun, Riley McMahon, Josh B Studdert, Nader Aryamanesh, Ran Wang, Naihe Jing, Pengyi Yang, Pierre Osteil, Patrick P.L Tam

| Plant development

BZR1 promotes pluripotency acquisition and callus development through direct regulation of ARF7 and ARF19

E Ebstrup, T Ammitsøe, N Blanco-Touriñán, J Hansen, CS Hardtke, E Rodriguez, M Petersen

Age-associated growth control modifies leaf proximodistal symmetry and enables leaf shape diversification

Xin-Min Li, Hannah Jenke, Sören Strauss, Yi Wang, Neha Bhatia, Daniel Kierzkowski, Rena Lymbouridou, Peter Huijser, Richard S. Smith, Adam Runions, Miltos Tsiantis

Plant Growth analysis using computer. An auxiliary computational program. II

Tomás de Aquino Portes

Regulation of ROP GTPase cycling between active/inactive states is essential for vegetative organogenesis in Marchantia polymorpha

Yuuki Sakai, Aki Ueno, Hiroki Yonetsuka, Tatsuaki Goh, Hirotaka Kato, Yuki Kondo, Hidehiro Fukaki, Kimitsune Ishizaki

Sepal shape variability is robust to cell size heterogeneity in Arabidopsis

Duy-Chi Trinh, Claire Lionnet, Christophe Trehin, Olivier Hamant

Wax ester synthase overexpression affects stomatal development, water consumption and growth of poplars

Ashkan Amirkhosravi, Gerrit-Jan Strijkstra, Alisa Keyl, Felix Häffner, Ulrike Lipka, Cornelia Herrfurth, Ivo Feussner, Andrea Polle

A multiplexed transcriptomic analysis of a plant embryonic hourglass

Hao Wu, Ruqiang Zhang, Michael J. Scanlon

CONCERTED PLANT GROWTH AND DEFENSE THROUGH TARGETED PHYTOHORMONE CROSSTALK MODIFICATION

Grace A. Johnston, Hannah M. Berry, Mikiko Kojima, Hitoshi Sakakibara, Cristiana T. Argueso

A prion-like protein regulates the 2-dimensional to 3-dimensional growth transition in the moss Physcomitrium patens

Zoe Weeks, Gargi Chaturvedi, Emily Day, Steven Kelly, Laura A. Moody

Plasma membrane and cytoplasmic compartmentalization: a dynamic structural framework required for pollen tube tip growth

Carolin Fritz, Theresa Maria Reimann, Jeremy Adler, Johanna Knab, Sylwia Schulmeister, Choy Kriechbaum, Sabine Müller, Ingela Parmryd, Benedikt Kost

The Class III peroxidase OsPrx20 is a key regulator of stress response and growth in rice

Tao Shen, Qingwen Wang, Dan Chen, Huining Ju, Runjiao Yan, Fengjuan Xu, Donghuan Fu, Xiaona Bu, Huan Zhang, Jiexiong Hu, Zhengguang Zhang, Lan Ni, Mingyi Jiang

RGF1 controls PLT2 protein stability through ROS-dependent regulation of a cysteine residue in root meristem development

Yu-Chun Hsiao, Shiau-Yu Shiue, Ming-Ren Yen, Joon-Keat Lai, Masashi Yamada

Genome editing in almond: A CRISPR-based approach through hairy root transformation

Veronika Jedličková, Marie Štefková, Juan Francisco Sánchez López, Jérôme Grimplet, María José Rubio Cabetas, Hélène S. Robert

Remote sensing for estimating genetic parameters of biomass accumulation and modeling stability of growth curves in alfalfa

Ranjita Thapa, Karl H. Kunze, Julie Hansen, Christopher Pierce, Virginia Moore, Ian Ray, Liam Wickes-Do, Nicolas Morales, Felipe Sabadin, Nicholas Santantonio, Michael A Gore, Kelly Robbins

WHIRLY1 regulates aliphatic glucosinolate biosynthesis in early seedling development of Arabidopsis

Nguyen Thuy-Linh, Moutesidi Pinelopi, Glasneck Anike, Khosravi Solmaz, Abel Steffen, Hensel Götz, Krupinska Karin, Humbeck Klaus

Auxin-mediated stress relaxation in pericycle and endoderm remodelling drive lateral root initiation

João R. D. Ramos, Blanca Jazmin Reyes-Hernández, Karen Alim, Alexis Maizel

The Zea mays PeptideAtlas – a new maize community resource

Klaas J. van Wijk, Tami Leppert, Zhi Sun, Isabell Guzchenko, Erica Debley, Georgia Sauermann, Pratyush Routray, Luis Mendoza, Qi Sun, Eric W. Deutsch

Multiplexed in situ hybridization reveals distinct lineage identities for major and minor vein initiation during maize leaf development

Chiara Perico, Maricris Zaidem, Olga Sedelnikova, Samik Bhattacharya, Christian Korfhage, Jane A. Langdale

Genome-Wide Transcriptome Dynamics in Auxin Homeostasis During Fruit Development in Strawberry (F. x ananassa)

Yoon Jeong Jang, Taehoon Kim, Makou Lin, Jeongim Kim, Kevin Begcy, Zhongchi Liu, Seonghee Lee

Stem cell homeostasis in the root of Arabidopsis involves cell-type specific complex formation of key transcription factors

Vivien I Strotmann, Monica L Garcia-Gomez, Yvonne Stahl

Inositol pyrophosphate catabolism by three families of phosphatases controls plant growth and development

Florian Laurent, Simon Maria Bartsch, Anuj Shukla, Felix Edgardo Rico Resendiz, Daniel Couto, Christelle Fuchs, Joel Nicolet, Sylvain Loubery, Henning J Jessen, Dorothea Fiedler, Michael Hothorn

| Evo-devo

Ridge and crossrib height of butterfly wing scales is a toolbox for structural color diversity

Cédric Finet, Yi Yang Bei, Vinod Saranathan, Qifeng Ruan, Antónia Monteiro

DO BIRDS SHOW UNIQUE MACROEVOLUTIONARY PATTERNS OF SEXUAL SIZE DIMORPHISM COMPARED TO OTHER AMNIOTES?

Evan Thomas Saitta

Genomic signatures associated with the evolutionary loss of egg yolk in parasitoid wasps

Xianxin Zhao, Yuanyuan Liu, Yi Yang, Chun He, Kevin C. Chan, Haiwei Lin, Qi Fang, Gongyin Ye, Xinhai Ye

Stem cell transcriptional profiles from mouse subspecies reveal cis-regulatory evolution at translation genes

Noah M. Simon, Yujin Kim, Diana M. Bautista, James R. Dutton, Rachel B. Brem

Sperm competition favours intermediate sperm size in a hermaphrodite

Santhosh Santhosh, Dieter Ebert, Tim Janicke

Changes in wing morphology rather than wingbeat kinematics enabled evolutionary miniaturization of hoverflies

Camille Le Roy, Nina Tervelde, Thomas Engels, Florian T. Muijres

Somatic embryogenesis of grapevine (Vitis vinifera) expresses a transcriptomic hourglass

Sara Koska, Dunja Leljak-Levanić, Nenad Malenica, Kian Bigović Villi, Momir Futo, Nina Čorak, Mateja Jagić, Anja Tušar, Niko Kasalo, Mirjana Domazet-Lošo, Kristian Vlahoviček, Tomislav Domazet-Lošo

Microevolution toward loss of photosynthesis: Mutations promoting dark-heterotrophic growth and suppressing photosynthetic growth in cyanobacteria

Shintaro Hida, Marie Nishio, Kazuma Uesaka, Mari Banba, Nobuyuki Takatani, Shinichi Takaichi, Haruki Yamamoto, Kunio Ihara, Yuichi Fujita

Conserved and novel enhancers in the Aedes aegypti single-minded locus recapitulate embryonic ventral midline gene expression

Isabella Schember, William Reid, Geyenna Sterling-Lentsch, Marc S. Halfon

A maternal-effect toxin-antidote element causes larval arrest in C. elegans

Stefan Zdraljevic, Laura Walter-McNeill, Giancarlo Bruni, Joshua S. Bloom, Daniel H.W. Leighton, Heriberto Marquez, Leonid Kruglyak

Phylogenomic analysis of the Lake Kronotskoe species flock of Dolly Varden charr reveals genetic and developmental signatures of sympatric radiation

Katherine C Woronowicz, Evgeny V Esin, Grigorii N Markevich, Crisvely Soto Martinez, Sarah McMenamin, Jacob M Daane, Matthew P Harris, Fedor N Shkil

Development of Germline Progenitors in Larval Queen Honeybee ovaries

Georgia Cullen, Erin Delargy, Peter K. Dearden

Developmental origins and evolution of pallial cell types and structures in birds

Bastienne Zaremba, Amir Fallahshahroudi, Céline Schneider, Julia Schmidt, Ioannis Sarropoulos, Evgeny Leushkin, Bianka Berki, Enya Van Poucke, Per Jensen, Rodrigo Senovilla-Ganzo, Francisca Hervas-Sotomayor, Nils Trost, Francesco Lamanna, Mari Sepp, Fernando García-Moreno, Henrik Kaessmann

A Transcriptomic Hourglass In Brown Algae

Jaruwatana S. Lotharukpong, Min Zheng, Remy Luthringer, Hajk-Georg Drost, Susana M. Coelho

Cell Biology

Spatio-temporal requirements of Aurora kinase A in mouse oocytes meiotic spindle building

Cecilia S. Blengini, Michaela Vaskovicova, Jan Schier, David Drutovic, Karen Schindler

Flamingo participates in multiple models of cell competition

Pablo Sanchez Bosch, Bomsoo Cho, Jeffrey D. Axelrod

Functional septate junctions between cyst cells are required for survival of transit amplifying male germ cells expressing Bag of marbles

Cameron W. Berry, Margaret T. Fuller

Native molecular architectures of centrosomes in C. elegans embryos

Fergus Tollervey, Manolo U. Rios, Evgenia Zagoriy, Jeffrey B. Woodruff, Julia Mahamid

Nuclear deformability facilitates apical nuclear migration in the developing zebrafish retina

Mariana Maia-Gil, Maria Gorjão, Roman Belousov, Jaime A. Espina, João Coelho, Ana P. Ramos, Elias H. Barriga, Anna Erzberger, Caren Norden

The Rac1 homolog CED-10 is a component of the MES-1/SRC-1 pathway for asymmetric division of the C. elegans EMS blastomere

Helen Lamb, Malgorzata J Liro, Krista M Myles, Mckenzi Fernholz, Holly A Anderson, Lesilee S Rose

Dynamics of single-cell protein covariation during epithelial-mesenchymal transition

Saad Khan, Rachel Conover, Anand R. Asthagiri, Nikolai Slavov

The PR factor Hamlet controls heterotypic epithelial tissue assembly in Drosophila reproduction system

Huazhen Wang, Ludivine Bertonnier-Brouty, Isabella Artner, Jiayu Wen, Qi Dai

Microtubule networks in zebrafish hair cells facilitate presynapse transport and fusion during development

Saman Hussain, Katherine Pinter, Mara Uhl, Hiu-Tung Wong, Katie Kindt

The Proximal Centriole-Like Structure Anchors the Centriole to the Sperm Nucleus

Danielle B. Buglak, Kathleen H.M. Holmes, Brian J. Galletta, Nasser M. Rusan

A conserved germline-specific Dsn1 alternative splice isoform supports oocyte and embryo development

Jimmy Ly, Cecilia S. Blengini, Sarah L. Cady, Karen Schindler, Iain M. Cheeseman

Mechanisms of Meiotic Spindle Initiation in Caenorhabditis elegans Oocytes

Ting Gong, Karen L. McNally, Siri Konanoor, Alma Peraza, Cynthia Bailey, Stefanie Redemann, Francis J. McNally

The fine-tuning of synapse development by oxidative stress and autophagy requires presynaptic ATM kinase

Matthew J. Taylor, Syed Azan Ahmed, Ellena G. Badenoch, David Bennett, Richard I. Tuxworth

Rudhira-mediated microtubule stability controls TGFβ signaling during mouse vascular development

Divyesh Joshi, Preeti Jindal, Ronak Shetty, Maneesha S. Inamdar

CENP-C-targeted PLK-1 regulates kinetochore function in C. elegans embryos

Laura Bel Borja, Samuel J.P. Taylor, Flavie Soubigou, Federico Pelisch

Comparative investigations of cellular dynamics in the development of medusae (Cnidaria: Medusozoa)

Matthew Kevin Travert, Kent Winata, Paulyn Cartwright

Modelling

Effective population size of X chromosomes and haplodiploids under cyclical parthenogenesis

Thomas J. Hitchcock

Connecting Transcriptomics with Computational Modeling to Reveal Developmental Adaptations in the Human Pediatric Myocardium

Shatha Salameh, Devon Guerrelli, Jacob A. Miller, Manan Desai, Nicolae Moise, Can Yerebakan, Alisa Bruce, Pranava Sinha, Yves d’Udekem, Seth H. Weinberg, Nikki Gillum Posnack

Stable developmental patterns of gene expression without morphogen gradients

Maciej Majka, Nils B. Becker, Pieter Rein ten Wolde, Marcin Zagorski, Thomas R. Sokolowski

Nested Inheritance Dynamics

Bahman Moraffah

Does nematic order allow groups of elongated cells to sense electric fields better?

Kurmanbek Kaiyrbekov, Brian A. Camley

Quantifying cell cycle regulation by tissue crowding

Carles Falcó, Daniel J. Cohen, José A. Carrillo, Ruth E. Baker

Stochastic dynamics of two-compartment models with regulatory mechanisms for hematopoiesis

Ren-Yi Wang, Marek Kimmel, Guodong Pang

A computational scheme connecting gene regulatory network dynamics with heterogeneous stem cell regeneration

Yakun Li, Xiyin Liang, Jinzhi Lei

Tools & Resources

Bellymount-Pulsed Tracking: A Novel Approach for Real-Time In vivo Imaging of Drosophila Oogenesis

Shruthi Balachandra, Amanda A. Amodeo

Three-dimensional reconstruction of fetal rhesus macaque kidneys at single-cell resolution reveals complex inter-relation of structures

Lucie Dequiedt, André Forjaz, Jamie O. Lo, Owen McCarty, Pei-Hsun. Wu, Avi Rosenberg, Denis Wirtz, Ashley Kiemen

Deep learning-based detection of murine congenital heart defects from µCT scans

Hoa Nguyen, Audrey Desgrange, Amaia Ochandorena-Saa, Vanessa Benhamo, Sigolène M. Meilhac, Christophe Zimmer

Resistance to Naïve and Formative Pluripotency Conversion in RSeT Human Embryonic Stem Cells

Kevin G. Chen, Kory R. Johnson, Kyeyoon Park, Dragan Maric, Forest Yang, Wen Fang Liu, Yang C. Fann, Barbara S. Mallon, Pamela G. Robey

A transcriptome atlas of zygotic and somatic embryogenesis in Norway spruce

Katja Stojkovič, Camilla Canovi, Kim-Cuong Le, Nicolas Delhomme, Ulrika Egertsdotter, Nathaniel R. Street

Single-embryo metabolomics reveals developmental metabolism in the early Drosophila embryo

J. Eduardo Pérez-Mojica, Zachary B. Madaj, Christine N. Isaguirre, Joe Roy, Kin H. Lau, Ryan D. Sheldon, Adelheid Lempradl

Development of the pulmonary vasculature in the gray short-tailed opossum (Monodelphis domestica) – 3D reconstruction by microcomputed tomography

Kirsten Ferner

Effect of glucose concentration in culture medium on the human preimplantation embryo methylome

Daniel Brison, Mollie McGrane, Sue Kimber

High-resolution atlas of the developing human heart and the great vessels

Semih Bayraktar, James Cranley, Kazumasa Kanemaru, Vincent R Knight-Schrijver, Maria Colzani, Hongorzul Davaapil, Jonathan Chuo Min Lee, Krzysztof Polanski, Laura Richardson, Claudia Semprich, Rakeshlal Kapuge, Monika Dabrowska, Ilaria Mulas, Shani Perera, Mina Patel, Yen Ho, Xiaoling He, Richard Tyser, Laure Gambardella, Sarah Teichmann, Sanjay Sinha

Multiomic analysis reveals developmental dynamics of the human heart in health and disease

James Cranley, Kazumasa Kanemaru, Semih Bayraktar, Vincent Knight-Schrijver, Jan Patrick Pett, Krzysztof Polanski, Monika Dabrowska, Ilaria Mulas, Laura Richardson, Claudia Semprich, Rakeshlal Kapuge, Shani Perera, Xiaoling He, Siew Yen Ho, Nadav Yayon, Liz Tuck, Kenny Roberts, Jack Palmer, Hongorzul Davaapil, Laure Gambardella, Minal Patel, Richard Tyser, Sanjay Sinha, Sarah Teichmann

The gut contractile organoid: a novel model for studying the gut motility regulated by coordinating signals between interstitial cells of Cajal and smooth muscles

Rei Yagasaki, Ryo Nakamura, Yuuki Shikaya, Ryosuke Tadokoro, Ruolin Hao, Zhe Wang, Mototsugu Eiraku, Masafumi Inaba, Yoshiko Takahashi

SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis

Xiaodan Xing, Chunling Tang, Yunzhe Guo, Nicholas Kurniawan, Guang Yang

Research practice & education

Enabling preprint discovery, evaluation, and analysis with Europe PMC

Mariia Levchenko, Michael Parkin, Johanna McEntyre, Melissa Harrison

Finding the right words to evaluate research: An empirical appraisal of eLife’s assessment vocabulary

Tom E. Hardwicke, Sarah R Schiavone, Beth Clarke, Simine Vazire

Leading researchers in the leadership of leading research universities: meta-research analysis

John P.A. Ioannidis

Mapping the Brazilian Scientific Diaspora: Migration Patterns of PhDs in Global Mobility

Concepta McManus, Brenno A. D. Neto, Abilio Afonso Baeta Neves, Rafael Tavares Schleicher, Claudia Figueiredo

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