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October in preprints

Posted by , on 2 November 2023

Welcome to our monthly trawl for developmental and stem cell biology (and related) preprints.

The preprints this month are hosted on bioRxiv – use these links below to get to the section you want:

Developmental biology

Cell Biology

Modelling

Tools & Resources

Research practice & education

Developmental biology

| Patterning & signalling

Light-induced trapping of endogenous proteins reveals spatiotemporal roles of microtubule and kinesin-1 in dendrite patterning of Drosophila sensory neurons

Yineng Xu, Bei Wang, Inle Bush, Harriet AJ Saunders, Jill Wildonger, Chun Han

Extramacrochaetae regulates Notch signaling in the Drosophila eye through non-apoptotic caspase activity

Sudershana Nair, Nicholas E. Baker

PCP components control anterior and posterior regeneration, with a Prickle homolog impacting muscle organization, in the acoel Hofstenia miamia

D. Marcela Bolaños, Amber Rock, Núria Ros-Rocher, James Sikes, Mansi Srivastava

Regulation of multiple signaling pathways promotes the consistent expansion of human pancreatic progenitors in defined conditions

Luka Jarc, Manuj Bandral, Elisa Zanfrini, Mathias Lesche, Vida Kufrin, Raquel Sendra, Daniela Pezzolla, Ioannis Giannios, Shahryar Khattak, Katrin Neumann, Barbara Ludwig, Anthony Gavalas

Fin elaboration via anterior-posterior regulation by Hedgehog signaling in teleosts

Yoshitaka Tanaka, Shun Okayama, Satoshi Ansai, Gembu Abe, Koji Tamura

The embryonic role of juvenile hormone in the firebrat, Thermobia domestica, reveals its function before its involvement in metamorphosis

James W Truman, Lynn M. Riddiford, Barbora Konopova, Marcela Nouzova, Fernando Noriega, Michelle Herko

Xbra modulates the activity of linker region phosporlated Smad1 during Xenopus somitogenesis

Jaebong Kim, Santosh Kumar, Zobia Umair, Ravi Shankar Goutam, Unjoo Lee

Emx2 Lineage Tracing Reveals Antecedent Patterns of Planar Polarity in the Mouse Inner Ear

Ellison J Goodrich, Michael R Deans

Cell-autonomous timing drives the vertebrate segmentation clock’s wave pattern

Laurel A Rohde, Arianne Bercowsky-Rama, Guillaume Valentin, Sundar Ram Naganathan, Ravi A Desai, Petr Strnad, Daniele Soroldoni, Andrew C Oates

Elevated temperature fatally disrupts nuclear divisions in the early Drosophila embryo.

Girish Kale, Pratika Agarwal, J Jaime Diaz-Larrosa, Steffen Lemke

Palatal segment contributions to midfacial growth in three inbred mouse strains

Ian C. Welsh, Maria E. Feiler, Danika Lipman, Isabel Mormile, Karissa Hansen, Christopher J. Percival

From Welsh et al. This image is made available under a CC-BY 4.0 International license.

Placode and neural crest origins of congenital deafness in mouse models of Waardenburg-Shah syndrome

Jamie Vicente S. Tan, Alicia Duron, Henry M. Sucov, Takako Makita

Mutations in the Bone Morphogenetic Protein signaling pathway sensitize zebrafish and humans to ethanol-induced jaw malformations

John R. Klem, Tae-Hwi Schwantes-An, Marco Abreu, Michael Suttie, Raeden Gray, Hieu Vo, Grace Conley, Tatiana M. Foroud, Leah Wetherill, CIFASD, C. Ben Lovely

Dynamic Hippo pathway activity underlies mesenchymal differentiation during lung alveolar morphogenesis

Fatima N. Chaudhry, Nigel S. Michki, Dain L. Shirmer, Sharon Mcgrath-Morrow, Lisa R. Young, David B. Frank, Jarod A. Zepp

| Morphogenesis & mechanics

Patterned embryonic invagination evolved in response to mechanical instability

Bruno C. Vellutini, Marina B. Cuenca, Abhijeet Krishna, Alicja Szałapak, Carl D. Modes, Pavel Tomančák

From Vellutini et al. This image is made available under a CC-BY 4.0 International license.

Scale-independent topological interactions drive the first fate decision in the Drosophila embryo

Woonyung Hur, Arghyadip Mukherjee, Luke Hayden, Ziqi Lu, Anna Chao, Noah P. Mitchell, Sebastian J. Streichan, Massimo Vergassola, Stefano Di Talia

Tri-n-butyl phosphate inhibits neurogenesis and motor functions during embryonic development in zebrafish

Gourav Chakraborty, Kedar Ahire, Bhgyashri Joshi, Chinmoy Patra

A model for angiogenesis suppression via SERPINF1 in the surrounding pro-acinar microenvironment during human fetal pancreas development

Pratik Nailesh Mehta, Charles Giardina

Identification and characterization of intermediate states in mammalian neural crest cell epithelial to mesenchymal transition and delamination

Ruonan Zhao, Emma L. Moore, Madelaine M Gogol, Jay R. Uhruh, Zulin Yu, Allison Scott, Yan Wang, Naresh Kumar Rajendran, Paul A. Trainor

From Zhao et al. This image is made available under a CC-BY 4.0 International license.

Piezo1 Mutant Zebrafish as a Model of Idiopathic Scoliosis

Ramli, Toshihiro Aramaki, Masakatsu Watanabe, Shigeru Kondo

TGFβ−induced embryonic cell senescence at the origin of the Cornelia de Lange syndrome

Céline Hachoud, Faten Chaabani, Erwan Watrin, Manuela Wuelling, Heiko Peters, Valérie Cormier-Daire, Michel Pucéat

Nutritional sex-specificity during larval development in mosquitoes

Ottavia Romoli, Javier Serrato-Salas, Chloé Gapp, Pol Figueras Ivern, Mathilde Gendrin

Heterologous expression of Dictyostelium discoideum NE81 in mouse embryo fibroblasts reveals conserved mechanoprotective roles of lamins

Jacob Odell, Ralph Gräf, Jan Lammerding

The Dilute domain of Canoe is not essential for Canoe’s role in linking adherens junctions to the cytoskeleton but contributes to robustness of morphogenesis

Emily D. McParland, T. Amber Butcher, Noah J. Gurley, Ruth I. Johnson, Kevin C. Slep, Mark Peifer

Cut it out: Out-of-plane stresses in cell sheet folding of Volvox embryos

Pierre A. Haas, Stephanie S. M. H. Höhn

From Haas et al. This image is made available under a CC-BY 4.0 International license.

| Genes & genomes

Sex-Specific DNA Methylation and Gene Expression Changes in Mouse Placentas After Early Preimplantation Alcohol Exposure

Lisa-Marie Legault, Mélanie Breton-Larrivée, Fannie Filion-Bienvenue, Anthony Lemieux, Alexandra Langford-Avelar, Thomas Dupas, Serge McGraw

FBXO24 modulates mRNA alternative splicing and MIWI degradation and is required for normal sperm formation and piRNA production

Zhiming Li, Xingping Liu, Yan Zhang, Yuanyuan Li, Liquan Zhou, Shuiqiao Yuan

Epididymal acquired sperm microRNAs modify post-fertilization embryonic gene expression

Natalie A. Trigg, Colin C. Conine

Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency

Surag Nair, Mohamed Ameen, Laksshman Sundaram, Anusri Pampari, Jacob Schreiber, Akshay Balsubramani, Yu Xin Wang, David Burns, Helen M Blau, Ioannis Karakikes, Kevin C Wang, Anshul Kundaje

Differences in binding preferences for XIST partners are observed in mammals with different early pregnancy morphologies

Ioannis Tsagakis, Haidee Tinning, Irene Malo-Estepa, Adrian Whitehouse, Mary J. O’Connell, Niamh Forde, Julie L Aspden

A wave of minor de novo DNA methylation initiates in mouse 8-cell embryos and co-regulates imprinted X- chromosome inactivation

Yuan Yue, Wei Fu, Qianying Yang, Chao Zhang, Wenjuan Wang, Meiqiang Chu, Qingji Lyu, Yawen Tang, Jian Cui, Xiaodong Wang, Zhenni Zhang, Jianhui Tian, Lei An

TAF7L REGULATES EARLY STAGES OF MALE GERM CELL DEVELOPMENT

Ayelen Moreno-Irusta, Esteban M. Dominguez, Khursheed Iqbal, Xiaoyu Zhang, Ning Wang, Michael J. Soares

Male gonad-enriched microRNAs function to control sperm production in C. elegans

Lu Lu, Allison L. Abbott

CEBPA restricts alveolar type 2 cell plasticity during development and injury-repair

Dalia Hassan, Jichao Chen

Widespread regulation of the maternal transcriptome by Nanos in Drosophila

Mohammad Marhabaie, Tammy H. Wharton, Sung Yun Kim, Robin P. Wharton

Characterization of Alternative Splicing During Mammalian Brain Development Reveals the Magnitude of Isoform Diversity and its Effects on Protein Conformational Changes

Leila Haj Abdullah Alieh, Beatriz Cardoso de Toledo, Anna Hadarovich, Agnes Toth-Petroczy, Federico Calegari

Rtf1-dependent transcriptional pausing regulates cardiogenesis

Adam David Langenbacher, Fei Lu, Luna Tsang, Zi Yi Stephanie Huang, Benjamin Keer, Zhiyu Tian, Alette Eide, Matteo Pellegrini, Haruko Nakano, Atsushi Nakano, Jau-Nian Chen

Widespread regulation of the maternal transcriptome by Nanos in Drosophila

Mohammad Marhabaie, Tammy H. Wharton, Sung Yun Kim, Robin P. Wharton

p27kip1-dependent gene activity within granulosa cells reveals pathways relevant for control of primordial follicle activation in mice

Emily R Frost, Güneş Taylor, Stefan Boeing, Christophe Galichet, Mark A Baker, Jessie M Sutherland, Robin Lovell-Badge

From Frost et al. This image is made available under a CC-BY 4.0 International license.

Transposable elements acquire time- and sex-specific transcriptional and epigenetic signatures along mouse fetal gonad development

Isabelle Stévant, Nitzan Gonen, Francis Poulat

Role of transcription and translation during the early development of the brown alga Ectocarpus

Daniel Liesner, Rémy Luthringer, Sébastien Colin, Julia Morales, J. Mark Cock, Susana M. Coelho

Bacterial vitamin B6 required for post-embryonic development in C. elegansv

Min Feng, Baizhen Gao, Daniela Ruiz, L. Rene Garcia, Qing Sun

Deletion of NuRD component Mta2 in nephron progenitor cells causes developmentally programmed FSGS

Jeannine Basta, Lynn Robbins, Lisa Stout, Michelle Brennan, John Shapiro, Mary Chen, Darcy Denner, Angel Baldan, Nidia Messias, Sethu Madhavan, Samir V. Parikh, Michael Rauchman

Two distinct waves of transcriptome and translatome remodelling drive germline stem cell differentiation

Tamsin J. Samuels, Jinghua Gui, Daniel Gebert, Felipe K. Teixeira

Zebrafish model of tcn2 deletion reveals new molecular insights into the role of vitamin B12 in embryonic development

Ajay Deepak Verma, Suraj S Nongmaithem, Challapalli Mounika, Swetha Ramachandran, Anushri Umesh, Giriraj Ratan Chandak

Identification of Evolutionarily Conserved VSX2 Enhancers in Retinal Development

Victoria Honnell, Shannon Sweeney, Jackie Norrie, Cody Ramirez, Beisi Xu, Brett Teubner, Ah Young Lee, Claire Bell, Michael A. Dyer

PBRM-1/PBAF-regulated genes in a multipotent progenitor

Laura D. Mathies, Andrew C. Kim, Evan M. Soukup, Alan’da E. Thomas, Jill C. Bettinger

From Mathies et al. This image is made available under a CC-BY 4.0 International license.

Gastrulation-stage gene expression in Nipbl+/- mouse embryos foreshadows the development of syndromic birth defects

Stephenson Chea, Jesse Kreger, Martha E. Lopez-Burks, Adam L. MacLean, Arthur D. Lander, Anne L. Calof

| Stem cells, regeneration & disease modelling

Segmentation in tapeworms as a modified form of flatworm posterior regeneration involving Wnt and Hedgehog signalling

Francesca Jarero, Andrew Baillie, Nick Riddiford, Jimena Montagne, Uriel Koziol, Peter D. Olson

A novel iPSC model reveals selective vulnerability of neurons in Multiple Sulfatase Deficiency

Vi Pham, Livia Sertori Finoti, Margaret M. Cassidy, Jean Ann Maguire, Alyssa L. Gagne, Elisa A. Waxman, Deborah L. French, Kaitlyn King, Parith Wongkittichotee, Xinying Hong, Lars Schlotawa, Beverly L. Davidson, Rebecca C. Ahrens-Nicklas

Development of properly-polarized trophoblast stem cell-derived organoids to model early human pregnancy

J Zhou, MA Sheridan, Y Tian, KJ Dahlgren, M Messler, T Peng, T Ezashi, LC Schulz, BD Ulery, RM Roberts, DJ Schust

Amniotic Fluid Organoids As Personalized Tools For Real-Time Modeling Of The Developing Fetus

Olga Babosova, Boaz Weisz, Grace Rabinowitz, Hagai Avnet, Hagit Shani, Anat Schwartz, Linoy Batsry, Noam Pardo, Tal Elkan, David Stockheim, Tammir Jubany, Denise D. Frank, Iris Barshack, Zohar A. Dotan, Rena Levin-Klein, Pazit Beckerman, Oren Pleniceanu

Delivery of A Jagged1-PEG-MAL hydrogel with Pediatric Human Bone Cells Regenerates Critically-Sized Craniofacial Bone Defects

Archana Kamalakar, Brendan Tobin, Sundus Kaimari, Afra I. Toma, Irica Moriarity, Surabhi Gautam, Pallavi Bhattaram, Shelly Abramowicz, Hicham Drissi, Andrés J. García, Levi B. Wood, Steven L. Goudy

Epigenetic insights into GABAergic development in Dravet Syndrome iPSC and therapeutic implications

Jens Schuster, Xi Lu, Yonglong Dang, Joakim Klar, Amelie Wenz, Niklas Dahl, Xingqi Chen

Advancements in Human Breast Organoid Culture: Modeling Complex Tissue Structures and Developmental Insights

Gat Rauner, Nicole Traugh, Colin Trepicchio, Meadow E Parrish, Kenan Mushayandebvu, Charlotte Kuperwasser

PCLAF-DREAM Drives Alveolar Cell Plasticity for Lung Regeneration

Bongjun Kim, Yuanjian Huang, Kyung-Pil Ko, Shengzhe Zhang, Gengyi Zou, Jie Zhang, Moonjong Kim, Danielle Little, Lisandra Vila Ellis, Margherita Paschini, Sohee Jun, Kwon-Sik Park, Jichao Chen, Carla Kim, Jae-Il Park

Single-cell analysis reveals distinct fibroblast plasticity during tenocyte regeneration in zebrafish

Arsheen M Rajan, Nicole L Rosin, Elodie Labit, Jeff Biernaskie, Shan Liao, Peng Huang

Cnot3 is required for male germ cell development and spermatogonial stem cell maintenance

Qing Chen, Safia Malki, Xiaojiang Xu, Brian Bennett, Brad L Lackford, Oleksandr Kirsanov, Chris B Geyer, Guang Hu

Molecular basis for positional memory and its reprogrammability in limb regeneration

L Otsuki, SA Plattner, Y Taniguchi-Sugiura, EM Tanaka

From Otsuki et al. This image is made available under a CC-BY 4.0 International license.

Reliability of high-quantity human brain organoids for modeling microcephaly, glioma invasion, and drug screening

Anand Ramani, Giovanni Pasquini, Niklas Gerkau, Omkar Suhas Vinchure, Elke Gabriel, Ina Rothenaigner, Sean Lin, Nazlican Altinisk, Dhanasekar Rathinam, Ali Mirsaidi, Olivier Goureau, Lucia Ricci-Vitiani, Giorgio, Q. d’alessandris, Roberto Pallini, Bernd Wollnik, Alysson Muotri, Nathalie Jurisch-Yaksi, Christine R Rose, Volker Busskamp, Kamyar Hadian, Jay Gopalakrishnan

Haematopoietic stem cell numbers are not solely determined by niche availability

Shoichiro Takeishi, Tony Marchand, Wade R. Koba, Daniel K. Borger, Chunliang Xu, Chandan Guha, Aviv Bergman, Paul S. Frenette, Kira Gritsman, Ulrich Steidl

Overexpression of Alpha-1 Antitrypsin Increases the Proliferation of Mesenchymal Stem Cells by Upregulation of Cyclin D1 and is Independent of the Wnt Signaling Pathway

Bryan Wolfe, Prasanth Muralidharan, Michael Y Lee, Hua Wei, Erica Green, Hongjun Wang, Charlie Strange

SOX2+ sustentacular cells are stem cells of the postnatal adrenal medulla

Alice Santambrogio, Yasmine Kemkem, Thea L. Willis, Ilona Berger, Maria Eleni Kastriti, Louis Faure, John P. Russell, Emily J. Lodge, Val Yianni, Rebecca J. Oakey, Barbara Altieri, Stefan R. Bornstein, Charlotte Steenblock, Igor Adameyko, Cynthia L. Andoniadou

Human pluripotent stem cell-derived respiratory airway progenitors generate alveolar epithelial cells and recapitulate features of idiopathic pulmonary fibrosis

Mikael G Pezet, Juan A Torres, Tania A Thimraj, Ivana Matkovic Leko, Nadine Schrode, John W Murray, Kristin Beaumont, Hans-Willem Snoeck

Human Placenta-Derived Mesenchymal Stem Cells Stimulate Neuronal Regeneration By Promoting Axon Growth And Restoring Neuronal Activity

Elvira H. de Laorden, Diana Simón, Santiago Milla, María Portela-Lomba, Marian Mellén, Javier Sierra, Pedro de la Villa, María Teresa Moreno-Flores, Maite Iglesias

A single cell trajectory of human archetypal pluripotent stem cell differentiation to trophoblast stem cells reveals induction of endogenous BMP5/7 and GATA3 without transitioning through a naive state

Ethan Tietze, Andre Rocha Barbosa, Bruno Henrique Silva Araujo, Veronica Euclydes, Hyeon Jin Cho, Yong Kyu Lee, Arthur Feltrin, Bailey Spiegelberg, Alan Lorenzetti, Joyce van de Leemput, Pasquale Di Carlo, Tomoyo Sawada, Gianluca Ursini, Kynon J. Benjamin, Helena Brentani, Joel E. Kleinman, Thomas M. Hyde, Daniel R. Weinberger, Ronald McKay, Joo Heon Shin, Apua C.M. Paquola, Jennifer A. Erwin

From Tietze et al. This image is made available under a CC-BY 4.0 International license.

Integrated Proteomics Identifies Troponin I Isoform Switch as a Regulator of a Sarcomere-Metabolism Axis During Cardiac Regeneration

Timothy J. Aballo, Jiyoung Bae, Wyatt G. Paltzer, Emily A. Chapman, Rebecca J. Salamon, Morgan M. Mann, Ying Ge, Ahmed I. Mahmoud

Splicing factor SRSF1 is essential for homing of precursor spermatogonial stem cells in mice

Longjie Sun, Zheng Lv, Xuexue Chen, Rong Ye, Shuang Tian, Chaofan Wang, Xiaomei Xie, Lu Yan, Xiaohong Yao, Yujing Shao, Sheng Cui, Juan Chen, Jiali Liu

Modeling cardiac fibroblast heterogeneity from human pluripotent stem cell-derived epicardial cells

Ian Fernandes, Shunsuke Funakoshi, Homaira Hamidzada, Slava Epelman, Gordon Keller

Secretome Derived from Umbilical cord mesenchymal stem cells exerts protective impacts on the blood-brain barrier against alpha-synuclein aggregates using an in vitro model

Kimia Marzookian, Farhang Aliakbari, Hamdam Hourfar, Daniel E. Otzen, Dina Morshedi

Emerging cooperativity between Oct4 and Sox2 governs the pluripotency network in mouse embryos

Yanlin Hou, Zhengwen Nie, Sergiy Velychko, Ivan Bedzhov, Sandra Heising, Qi Jiang, Hui Zhang, Guangming Wu, Kenjiro Adachi, Hans R. Schöler

Limb regeneration is blastema dependent in a ladybird beetle, Cheilomenes sexmaculata (Fabricius)

Saumya Rawat, Shriza Rai, Geetanjali Mishra

GRAMD2+ alveolar type I cell plasticity facilitates cell state transitions in organoid culture

Hua Shen, Weimou Chen, Yixin Liu, Alessandra Castaldi, Jonathan Castillo, Masafumi Horie, Per Flodby, Shivah Sundar, Changgong Li, Yanbin Ji, Parviz Minoo, Crystal N Marconett, Beiyun Zhou, Zea Borok

Electrophysiological characterisation of iPSC-derived human β-like cells and an SLC30A8 disease model

Manon Jaffredo, Nicole A. J. Krentz, Benoite Champon, Claire E. Duff, Sameena Nawaz, Nicola Beer, Christian Honore, Anne Clark, Patrik Rorsman, Jochen Lang, Anna L. Gloyn, Matthieu Raoux, Benoit Hastoy

Mating induces ecdysone signaling in the Drosophila testis niche disrupting somatic encystment of germ cells and stem cell cytokinesis

Tiffany V. Roach, Kari F. Lenhart

Preservation of co-expression defines the primary tissue fidelity of human neural organoids

Jonathan M. Werner, Jesse Gillis

LSD1 controls a nuclear checkpoint in Wnt/β-Catenin signaling to regulate muscle stem cell self-renewal

Sandrine Mouradian, Delia Cicciarello, Nicolas Lacoste, Valérie Risson, Francesca Berretta, Fabien Le Grand, Nicolas Rose, Thomas Simonet, Laurent Schaeffer, Isabella Scionti

Liver regeneration by a population of midzone-located mesenchymal-hepatocyte hybrid cells

Guo Yu, Shaoyang Zhang, Ana Romo, Soma Biswas, Baojie Li, Jing Li

From Yu et al. This image is made available under a CC-BY 4.0 International license.

| Plant development

Puzzle cell shape emerges from the interaction of growth with mechanical constraints

Nicola Trozzi, Brendan Lane, Alice Perruchoud, Yixuan Wang, Lukas Hörmayer, Mylan Ansel, Corentin Mollier, Alice Malivert, Frances Clark, Tammo Reichgelt, Adrienne H.K. Roeder, Olivier Hamant, Arezki Boudaoud, Dorota Kwiatkowska, Adam Runions, Richard S. Smith, Mateusz Majda

Comparative spatial transcriptomics of peach and nectarine fruits elucidates the mechanism underlying fruit trichome development

Zihao Zhao, Ke Cao, Aizhi Qin, Zhixin Liu, Liping Guan, Susu Sun, Hao Liu, Yaping Zhou, Jincheng Yang, Yumeng Liu, Mengke Hu, Vincent Ninkuu, Xuwu Sun, Lirong Wang

The Chaperone NASP Contributes to De Novo Deposition of the Centromeric Histone Variant CENH3 in Arabidopsis Early Embryogenesis

Hidenori Takeuchi, Shiori Nagahara, Tetsuya Higashiyama, Frédéric Berger

Developmentally regulated generation of a systemic signal for long-lasting defence priming in tomato

Katie Stevens, Michael R Roberts, Katie Jeynes-Cupper, Marco Catoni, Estrella Luna

The Hidden Diversity of Vascular Patterns in Flower Heads

Andrew Owens, Teng Zhang, Philmo Gu, Jeremy Hart, Jarvis Stobbs, Mikolaj Cieslak, Paula Elomaa, Przemyslaw Prusinkiewicz

Compensation of compromised PRC2 regulation by a miRNA ensures robustness of Arabidopsis leaf development

Aude Maugarny, Aurelie Vialette, Bernard Adroher, Nathalie Mathy-Franchet, Francois Roudier, Patrick Laufs

Two subtypes of GTPase-activating proteins coordinate tip growth and cell size regulation in Physcomitrium patens

Jingtong Ruan, Linyu Lai, Hongxin Ou, Peishan Yi

Low relative air humidity and increased stomatal density independently hamper growth in young Arabidopsis

Ingmar Tulva, Kaspar Koolmeister, Hanna Hõrak

Pan-genome analysis of different morphotypes reveals genomic basis of Brassica oleracea domestication and differential organogenesis

Ning Guo, Shenyun Wang, Tianyi Wang, Mengmeng Duan, Mei Zong, Liming Miao, Shuo Han, Guixiang Wang, Xin Liu, Deshuang Zhang, Chengzhi Jiao, Hongwei Xu, Liyang Chen, Zhangjun Fei, Jianbin Li, Fan Liu

AGAMOUS-like 6 and MYB DOMAIN PROTEIN 80 regulate the development of female and male cones in Pinus densiflora S. et Z

Dayoung Lee, Yang-Gil Kim, Kyu-Suk Kang

Impaired embryo sac cellularization by PMEI gene mutation affects gamete specification and twin plants in Arabidopsis

Isha Sharma, Pinninti Malathi, Ramamurthy Srinivasan, Shripad Ramachandra Bhat, Yelam Sreenivasulu

Four-dimensional quantitative analysis of cell plate development using lattice light sheet microscopy identifies robust transition points between growth phases

Rosalie Sinclair, Minmin Wang, Zaki Jawaid, Jesse Aaron, Blair Rossetti, Eric Wait, Kent McDonald, Daniel Cox, John Heddleston, Thomas Wilkop, Georgia Drakakaki

From Sinclair et al. This image is made available under a CC-BY-NC 4.0 International license.

UPL3 Promotes BZR1 Degradation, Growth Arrest, and Seedling Survival under Starvation Stress in Arabidopsis

Zhenzhen Zhang, Hongliang Zhang, Efren Gonzalez, Tarabryn Grismer, Shou-Ling Xu, Zhi-Yong Wang

ABI3 regulates ABI1 function to control cell length in primary root elongation zone

Saptarshi Datta, Drishti Mandal, Sicon Mitra, Ronita Nag Chaudhuri

| Evo-devo

Pervasive morphological responses to climate change in bird body and appendage size

Sara Ryding, Alexandra McQueen, Marcel Klaassen, Glenn J. Tattersall, Matthew R.E. Symonds

The role of heterochronic gene expression and regulatory architecture in early developmental divergence

Nathan D. Harry, Christina Zakas

Gliding towards an understanding of the origin of flight in bats

Abigail E Burtner, David M Grossnickle, Sharlene E Santana, Chris J Law

Capitella teleta gets left out: Possible evolutionary shift causes loss of left tissues rather than increased neural tissue from dominant-negative BMPR1

Nicole B. Webster, Néva P. Meyer

Divergent evolutionary strategies preempt tissue collision in fly gastrulation

Bipasha Dey, Verena Kaul, Girish Kale, Maily Scorcelletti, Michiko Takeda, Yu-Chiun Wang, Steffen Lemke

The human developing cerebral cortex is characterized by an increased de novo expression of lncRNAs in excitatory neurons

David A. Morales-Vicente, Ana C. Tahira, Daisy Woellner-Santos, Murilo S. Amaral, Maria G. Berzoti-Coelho, Sergio Verjovski-Almeida

Brain enlargement with a rostral bias in larvae from a spontaneously variant Xenopus female line: implications for vertebrate evolution

Ikuko Hongo, Chihiro Yamaguchi, Harumasa Okamoto

The evolution of gestation length in eutherian mammals

Thodoris Danis, Antonis Rokas

Evaluating the patterning cascade model of tooth morphogenesis in the human lower mixed and permanent dentition

Dori E. Kenessey, Christopher M. Stojanowski, Kathleen S. Paul

From Kenessey et al. This image is made available under a CC-BY 4.0 International license.

Revisiting Hox gene evolution and Hox cluster linkage across Nematoda

Joseph Kirangwa, Dominik R Laetsch, Erna King, Lewis Stevens, Mark Blaxter, Oleksandr Holovachov, Philipp Schiffer

Cell Biology

FMNL2 regulates actin for ER and mitochondria distribution in oocyte meiosis

Meng-Hao Pan, Zhen-Nan Pan, Ming-Hong Sun, Xiao-Han Li, Jia-Qian Ju, Shi-Ming Luo, Xiang-Hong Ou, Shao-Chen Sun

Intercellular contact and cargo transfer between Müller glia and to microglia precede apoptotic cell clearance in the developing retina

Michael Morales, Anna P Findley, Diana M. Mitchell

Premature endocycling of Drosophila follicle cells causes pleiotropic defects in oogenesis

Hunter C Herriage, Brian R Calvi

From Herriage et al. This image is made available under a CC-BY-NC 4.0 International license.

Disrupted endosomal trafficking of the Vangl-Celsr polarity complex causes congenital anomalies in trachea-esophageal separation

Nicole A Edwards, Adhish Kashyap, Alissa Warren, Zachary Agricola, Alan P Kenny, Yufeng Shen, Wendy K Chung, Aaron M Zorn

Vertical transmission of maternal DNA through extracellular vesicles associates with altered embryo bioenergetics during the periconception period

David Bolumar, Javier Moncayo-Arlandi, Javier Gonzalez-Fernandez, Ana Ochando, Inmaculada Moreno, Ana Monteagudo-Sanchez, Carlos Marin, Antonio Diez, Paula Fabra, Miguel Angel Checa, Juan Jose Espinos, David K Gardner, Carlos Simon, Felipe Vilella

Actin-Driven Nanotopography Promotes Stable Integrin Adhesion Formation in Developing Tissue

Tianchi Chen, Cecilia Huertas Fernández-Espartero, Abigail Illand, Ching-Ting Tsai, Yang Yang, Benjamin Klapholz, Pierre Jouchet, Mélanie Fabre, Olivier Rossier, Bianxiao Cui, Sandrine Lévêque-Fort, Nicholas H. Brown, Grégory Giannone

Tunneling nanotubes enable intercellular transfer in zebrafish embryos

Olga Korenkova, Shiyu Liu, Ines Prlesi, Anna Pepe, Shahad Albadri, Filippo Del Bene, Chiara Zurzolo

Gαi2-Mediated Regulation of Microtubules Dynamics and Rac1 Activity Orchestrates Cranial Neural Crest Cell Migration in Xenopus

Soraya Villaseca, Juan I Leal, Jossef Guajardo, Hernan Morales-Navarrete, Roberto Mayor, Marcela Torrejón

Trabid patient mutations impede the axonal trafficking of adenomatous polyposis coli to disrupt neurite growth

Daniel Frank, Maria Bergamasco, Michael Mlodzianoski, Andrew Kueh, Ellen Tsui, Cathrine Hall, Georgios Kastrappis, Anne Kathrin Voss, Catriona McLean, Maree C Faux, Kelly Rogers, Bang Tran, Elizabeth Vincan, David Komander, Grant Dewson, Hoanh Tran

Kinesin family member Kif23 regulates cytokinetic division and maintains neural stem/progenitor cell pool in the developing neocortex

Sharmin Naher, Takako Kikkawa, Kenji Iemura, Satoshi Miyashita, Mikio Hoshino, Kozo Tanaka, Shinsuke Niwa, Jin-Wu Tsai, Noriko Osumi

Dynamics of pax7 expression during development, muscle regeneration, and in vitro differentiation of satellite cells in the trout

Cécile Rallière, Sabrina Jagot, Nathalie Sabin, Jean-Charles Gabillard

From Rallière et al . This image is made available under a CC-BY 4.0 International license.

Reorganization of the Flagellum Scaffolding Induces a Sperm Standstill During Fertilization

Martina Jabloñski, Guillermina M. Luque, Matías D. Gómez-Elías, Claudia Sanchez-Cardenas, Xinran Xu, Jose Luis de la Vega-Beltran, Gabriel Corkidi, Alejandro Linares, Victor X. Abonza Amaro, Dario Krapf, Diego Krapf, Alberto Darszon, Adan Guerrero, Mariano G. Buffone

Modelling

A mathematical framework for the emergence of winners and losers in cell competition

Thomas F. Pak, Joe M. Pitt-Francis, Ruth E. Baker

Turing pattern formation in reaction-cross-diffusion systems with a bilayer geometry

Antoine Diez, Andrew L. Krause, Philip K. Maini, Eamonn A. Gaffney, Sungrim Seirin-Lee

Neutral competition explains the clonal composition of neural organoids

Florian G. Pflug, Simon Haendeler, Christopher Esk, Dominik Lindenhofer, Jürgen A. Knoblich, Arndt von Haeseler

A geometrical model of cell fate specification in the mouse blastocyst

Archishman Raju, Eric D. Siggia

Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm

Tien Comlekoglu, Bette J. Dzamba, Gustavo G. Pacheco, David R. Shook, T.J. Sego, James A. Glazier, Shayn M. Peirce, Douglas W. DeSimone

Tools & Resources

Single-fly assemblies fill major phylogenomic gaps across the Drosophilidae Tree of Life

Bernard Y. Kim, Hannah R. Gellert, Samuel H. Church, Anton Suvorov, Sean S. Anderson, Olga Barmina, Sofia G. Beskid, Aaron A. Comeault, K. Nicole Crown, Sarah E. Diamond, Steve Dorus, Takako Fujichika, James A. Hemker, Jan Hrcek, Maaria Kankare, Toru Katoh, Karl N. Magnacca, Ryan A. Martin, Teruyuki Matsunaga, Matthew J. Medeiros, Danny E. Miller, Scott Pitnick, Sara Simoni, Tessa E. Steenwinkel, Michele Schiffer, Zeeshan A. Syed, Aya Takahashi, Kevin H-C. Wei, Tsuya Yokoyama, Michael B. Eisen, Artyom Kopp, Daniel Matute, Darren J. Obbard, Patrick M. O’Grady, Donald K. Price, Masanori J. Toda, Thomas Werner, Dmitri A. Petrov

Quantitative proteome dynamics across embryogenesis in a model chordate

Alexander N. Frese, Andrea Mariossi, Michael S. Levine, Martin Wühr

An integrated transcriptomic cell atlas of human neural organoids

Zhisong He, Leander Dony, Jonas Simon Fleck, Artur Szałata, Katelyn X. Li, Irena Slišković, Hsiu-Chuan Lin, Malgorzata Santel, Alexander Atamian, Giorgia Quadrato, Jieran Sun, Sergiu P. Paşca, J. Gray Camp, Fabian Theis, Barbara Treutlein

From He et al. This image is made available under a CC-BY-NC 4.0 International license.

An in vitro platform for quantifying cell cycle phase lengths in primary human intestinal stem cells

Michael J Cotton, Pablo Ariel, Kaiwen Chen, Vanessa A Walcott, Michelle Dixit, Keith A Breau, Caroline M Hinesley, Kasia Kedziora, Cynthia Y Tang, Anna Zheng, Scott T Magness, Joseph Burclaff

A human prenatal skin cell atlas reveals immune cell regulation of skin morphogenesis

Nusayhah Hudaa Gopee, Ni Huang, Bayanne Olabi, Chloe Admane, Rachel A Botting, April Rose Foster, Fereshteh Torabi, Elena Winheim, Dinithi N Sumanaweera, Issac Goh, Mohi Miah, Emily Stephenson, Win Min Tun, Pejvak Moghimi, Ben Rumney, Peng He, Sid Lawrence, Kenny Roberts, Keval Sidhpura, Justin Englebert, Laura Jardine, Gary Reynolds, Antony Rose, Clarisse Ganier, Vicky Rowe, Sophie Pritchard, Ilaria Mulas, James Fletcher, Dorin-Mirel Popescu, Elizabeth FM Poyner, Anna Dubois, Andrew Filby, Steven Lisgo, Roger A Barker, JONG-EUN PARK, Roser Vento-Tormo, Phuong Ahn Le, Sara Serdy, Jin Kim, CiCi Deakin, Jiyoon Lee, Marina T Nikolova, Neil Rajan, Stephane Ballereau, Tong Li, Josh Moore, David Horsfall, Daniela Basurto Lozada, Edel A O’Toole, Barbara Treutlein, Omer Bayraktar, Maria Kasper, Pavel Mazin, Laure Gambardella, Karl Koehler, Sarah Teichmann, Muzlifah Haniffa

Early human fetal lung atlas reveals the temporal dynamics of epithelial cell plasticity.

Henry Tat Quach, Spencer Farrell, Kayshani Kanagarajah, Michael Wu, Xiaoqiao Xu, Prajkta Kallurkar, Andrei Turinsky, Christine Bear, Felix Ratjen, Sidhartha Goyal, Theo J Moraes, Amy Wong

A Spatiotemporal and Machine-Learning Platform Accelerates the Manufacturing of hPSC-derived Esophageal Mucosa

Ying Yang, Carmel Grace McCullough, Lucas Seninge, Lihao Guo, Woo-Joo Kwon, Yongchun Zhang, Nancy Yanzhe Li, Sadhana Gaddam, Cory Pan, Hanson Zhen, Jessica Torkelson, Ian A. Glass, the Birth Defects Research Laboratory, Greg Charville, Jianwen Que, Joshua Stuart, Hongxu Ding, Anthony Oro

A spatial-temporal map of glutamatergic neurogenesis in embryonic cerebellar nuclei uncovers a high degree of cellular heterogeneity

Filippo Casoni, Laura Croci, Francesca Marroni, Giulia Demenego, Ottavio Cremona, Franca Codazzi, G. Giacomo Consalez

Research practice & education

Studentsourcing – aggregating and re-using data from a practical cell biology course

Joachim Goedhart

Keywords to success: a practical guide to maximise the visibility and impact of academic papers

Patrice Pottier, Malgorzata Lagisz, Samantha Burke, Szymon M. Drobniak, Philip A. Downing, Erin L. Macartney, April Robin Martinig, Ayumi Mizuno, Kyle Morrison, Pietro Pollo, Lorenzo Ricolfi, Jesse Tam, Coralie Williams, Yefeng Yang, Shinichi Nakagawa

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