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Displaying posts with the tag: computational-modeling [Clear Filter]

Pre-trained Machine Learning Models for Developmental Biology

Posted by on October 29th, 2019

Pre-trained Models for Developmental Biology Authors: Bradly Alicea, Richard Gordon, Abraham Kohrmann, Jesse Parent, Vinay Varma Our virtual discussion group (DevoWormML) has been exploring a number of topics related to the use of pre-trained models in machine learning (specifically deep learning). Pre-trained models such as GPT-2 [1], pix2pix [2], and OpenPose [3] are used for[…]

Postdoc Helsinki: Models of organ pattern formation of morphogenesis

Posted by on July 19th, 2019

1.Basic job and project description: 1.Job/ project description: The postdoc could choose between three main research projects: a. Mathematical modeling of phenotypic evolution in populations with embryonic development. b. Mathematical modeling of gene network and embryonic development evolution. c. Mathematical modeling of organ development and their evolution in mammalian teeth or Drosophila wing or some[…]

PhD in Systems Biology of Embryoid Self-Organization (Seville, Spain)

Posted by on July 17th, 2019

4 year PhD position, Seville Spain (deadline 25/07/19) We are looking for students with a Master degree to join our lab for a 4 year PhD position, application deadline 25/07/19. Our laboratory investigates fundamental questions of developmental biology by using mouse embryonic stem cells spheroids known as Embryoids. The successful candidate will develop a project[…]

Looking back on the adventure: exploring cell fate conversion with single cell RNA-seq

Posted by on November 21st, 2017

The story behind our recent paper: Liu Z*, Wang L*, Welch JD*, Ma H, Zhou Y, Vaseghi HR, Yu S, Wall JB, Alimohamadi S, Zheng M, Yin CY, Shen WN, Prins JF, Liu JD, Qian L (2017). Single cell transcriptomics reconstructs lineage conversion from fibroblast to cardiomyocyte. Nature, 551, 100-104 *: co-first author. https://www.nature.com/articles/nature24454  […]

Postdoctoral Position – Explaining Development, Evolutionary Novelty, and Evolvability

Posted by on November 18th, 2014

The Minnesota Center for Philosophy of Science in the College of Liberal Arts at the University of Minnesota invites applications for a full-time postdoctoral position in conjunction with the project “Integrating Generic and Genetic Explanations of Biological Phenomena,” sponsored by the John Templeton Foundation. This project brings together scholars in philosophy and biology to address[…]