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Pre-trained Machine Learning Models for Developmental Biology

Posted by , on 29 October 2019

Pre-trained Models for Developmental Biology Authors: Bradly Alicea, Richard Gordon, Abraham Kohrmann, Jesse Parent, Vinay Varma Our virtual discussion group (DevoWormML) has been exploring a number of topics related to ...
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EmbryoPhenomics: An open-source technological platform

Posted by , on 5 February 2019

Tills O, Spicer JI, Grimmer A, Marini S, Jie VW, Tully E, Rundle SD. 2018. A high-throughput and open-source platform for embryo phenomics. PLOS Biology, 16:1-19. https://doi.org/10.1371/journal.pbio.3000074 Background A seasoned ...
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Showing distributions

Posted by , on 6 August 2018

When reading about co-evolution of prey and predators, I stumbled across a cute new plot type: a half boxplot, half dot plot to show data distributions.     Wilson used ...
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New embryo phenotype data from the DMDD programme

Posted by , on 15 June 2018

Following our latest data release, the DMDD website (dmdd.org.uk) now contains detailed phenotype data for nearly 700 embryos from 82 different knockout mouse lines. Highlights include the identification of limb ...
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New resources section on the Node

Posted by , on 23 November 2017

Since its launch in 2010, the Node has functioned as a community resource for developmental biologists. When I started my 3 month internship in September (see my introductory post here), ...
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9.5 million knockout mouse embryo images now available

Posted by , on 20 July 2017

A new set of DMDD embryo and placenta data has been released, taking our total dataset to 9.5 million images of around 1300 embryos. DMDD is a primary screen of ...
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Leaving the bar in five steps

Posted by , on 24 March 2017

Introduction Graphs (or charts or plots) are often used for the display and summary of data. They are essential tools for the communication of results in presentations or manuscripts. One ...
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New phenotype dataset available for embryonic-lethal mouse knockouts

Posted by , on 1 December 2016

    This post originally appeared on Annotations, the DMDD blog.   New image and phenotype data for embryos and placentas from embryonic lethal knockout mouse lines has been made ...
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New DMDD embryonic-lethal mouse data now available

Posted by , on 15 August 2016

  This post was originally posted on the DMDD blog.   New embryonic-lethal knockout mouse lines are now available on the DMDD database. If you haven’t previously taken a look ...
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Of mice and men: exploring Mouse ENCODE

Posted by , on 17 December 2014

The Mouse ENCODE Project released a slew of papers late last month reporting findings from a three-year effort to comprehensively map functional elements in the mouse genome. Their major findings ...
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