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June in preprints

Posted by , on 5 July 2023

Welcome to our monthly trawl for developmental and stem cell biology (and related) preprints.

The preprints this month are hosted on bioRxiv and aRxiv – use these links below to get to the section you want:

Developmental biology

Cell Biology

Modelling

Tools & Resources

Developmental biology

| Patterning & signalling

Recording morphogen signals reveals origins of gastruloid symmetry breaking

Harold M. McNamara, Sabrina C. Solley, Britt Adamson, Michelle M. Chan, Jared E. Toettcher

Hedgehog signaling via its ligand DHH acts as cell fate determinant during skeletal muscle regeneration

Alessandra M. Norris, Ambili Bai Appu, Connor D. Johnson, Lylybell Y. Zhou, David W. McKellar, Marie-Ange Renault, David Hammers, Benjamin D. Cosgrove, Daniel Kopinke

Negative feedback on Retinoic Acid by Brachyury guides gastruloid symmetry-breaking

Meagan J. Hennessy, Timothy Fulton, David A. Turner, Ben Steventon

Growth plate resting zone chondrocytes acquire transient clonal competency upon Hedgehog activation and efficiently transform into trabecular bone osteoblasts

Shion Orikasa, Yuki Matsushita, Michael Fogge, Koji Mizuhashi, Naoko Sakagami, Wanida Ono, Noriaki Ono

Robust axis elongation by Nodal-dependent restriction of BMP signaling

Alexandra Schauer, Kornelija Pranjic-Ferscha, Robert Hauschild, Carl-Philipp Heisenberg

Zebrafish blastoderm explants from Schauer et al. The image is made available under a CC-BY-NC 4.0 International license.

Temporally resolved early BMP-driven transcriptional cascade during human amnion specification

Nikola Sekulovski, Jenna C. Wettstein, Amber E. Carleton, Linnea E. Taniguchi, Xiaolong Ma, Sridhar Rao, Jenna K. Schmidt, Thaddeus G. Golos, Chien-Wei Lin, Kenichiro Taniguchi

Specification and survival of post-metamorphic branchiomeric neurons in the hindbrain of a non-vertebrate chordate

Eduardo D. Gigante, Katarzyna M. Piekarz, Alexandra Gurgis, Leslie Cohen, Florian Razy-Krajka, Sydney Popsuj, Hussan S. Ali, Shruthi Mohana Sundaram, Alberto Stolfi

Crosstalk between glucose metabolism and morphogen signalling specifies tonotopic identity in developing hair cells

James DB O’Sullivan, Thomas S Blacker, Claire Scott, Weise Chang, Mohi Ahmed, Val Yianni, Zoe F Mann

Rewiring of the epigenome and chromatin architecture by retinoic acid signaling during zebrafish embryonic development

Marta Moreno-Oñate, Lourdes Gallardo-Fuentes, Pedro M. Martínez-García, Silvia Naranjo, Sandra Jiménez-Gancedo, José L. Gómez-Skarmeta, Juan J. Tena, José M. Santos-Pereira

Mutation in the Bone Morphogenetic Protein signaling pathway sensitize zebrafish and human to ethanol-induced jaw malformations

John R Klem, Tae-Hwi Schwantes-An, Marco Abreu, Michael Suttie, Raeden Gray, Hieu Vo, Grace Conley, Tatiana M Foroud, Leah Wetherill, CIFASD, charles B lovely

Clonal neural tube organoids self-organise floorplate through BMP-mediated cluster competition

Teresa Krammer, Hannah T. Stuart, Elena Gromberg, Keisuke Ishihara, Manuela Melchionda, Jingkui Wang, Elena Costantini, Stefanie Lehr, Dillon Cislo, Laura Arbanas, Alexandra Hörmann, Ralph A. Neumüller, Nicola Elvassore, Eric Siggia, James Briscoe, Anna Kicheva, Elly M. Tanaak

| Morphogenesis & mechanics

Overburdened Ferroptotic Stress Impairs Tooth Morphogenesis

Haisheng Wang, Xiaofeng Wang, Chenglin Wang, Fanyuan Yu, Ling Ye

Tooth morphogenesis from Wang et al. This image is made available under a CC-BY 4.0 International license.

The mechanical force with the physiological movement works as a biological cue in tendon development during the postnatal phase in mice

Yuna Usami, Takanori Kokubun

Viscous shear is a key force in Drosophila ventral furrow morphogenesis

Amanda Nicole Goldner, Mohamad Ibrahim Cheikh, Miriam Osterfield, Konstantin Doubrovinski

Coupling and uncoupling of midline morphogenesis and cell flow in amniote gastrulation

Rieko Asai, Vivek N. Prakash, Shubham Sinha, Manu Prakash, Takashi Mikawa

Single-cell lineage tracing reveals hierarchy and mechanism of adipocyte precursor maturation

Guillermo C. Rivera-Gonzalez, Emily G. Butka, Carolynn E. Gonzalez, Wenjun Kong, Kunal Jindal, Samantha A. Morris

Coordination between ECM and cell-cell adhesion regulates the development of islet aggregation, architecture, and functional maturation

Wilma Tixi, Maricela Maldonado, Ya-Ting Chang, Amy Chiu, Wilson Yeung, Nazia Parveen, Michael Nelson, Ryan Hart, Shihao Wang, Wu Jih Hsu, Patrick Fueger, Janel L. Kopp, Mark O. Huising, Sangeeta Dhawan, Hung-Ping Shih

A multi-tiered mechanical mechanism shapes the early neural plate

Angus Inman, Judith E. Lutton, Elisabeth Spiritosanto, Masazumi Tada, Till Bretschneider, Pierre A. Haas, Michael Smutny

A cytokinetic ring-driven cell rotation achieves Hertwig’s rule in early development

Teije C. Middelkoop, Jonas Neipel, Caitlin E. Cornell, Ronald Naumann, Lokesh G. Pimpale, Frank Jülicher, Stephan W. Grill

Exposure to the aryl hydrocarbon receptor agonist dioxin disrupts formation of the muscle, nerves, and vasculature in the developing jaw

Layra G. Cintrón-Rivera, Nicole Burns, Ratna Patel, Jessica Plavicki

| Genes & genomes

eIF4E1b is a non-canonical eIF4E required for maternal mRNA dormancy

Laura Lorenzo-Orts, Marcus Strobl, Benjamin Steinmetz, Friederike Leesch, Carina Pribitzer, Michael Schutzbier, Gerhard Duernberger, Andrea Pauli

Zebrafish ovaries from Lorenzo-Orts et al. This image is made available under a CC-BY-NC 4.0 International license.

Expression and molecular regulation of key genes during adipogenesis of neural crest stem cells

Bo-wen Dong, Wen-chao Guan, Kai Zhang, Yan Zhang, Yu Yang, Yan-ping Zhao, Rui Bai, Ming-xue Zheng, Xiao-zhen Cui

MYC is essential for induction of major ZGA and subsequent preimplantation development

Takuto Yamamoto, Haoxue Wang, Hana Sato, Shinnosuke Honda, Shuntaro Ikeda, Naojiro Minami

Thymic epithelial cell fate and potency in early organogenesis assessed by single cell transcriptional and functional analysis

An Chengrui, Alison M. Farley, Sam Palmer, Dong Liu, Anastasia I. Kousa, Paul Rouse, Viktoria Major, Joanna Sweetman, Jan Morys, Andrea Corsinotti, Jennifer Nichols, Jan Ure, Renee McLay, Luke Boulter, S. Jon Chapman, Simon R. Tomlinson, C. Clare Blackburn

High-throughput mRNA-seq atlas of human placenta shows vast transcriptome remodeling from first to third trimester

Tania L Gonzalez, Sahar Wertheimer, Amy E Flowers, Yizhou Wang, Chintda Santiskulvong, Ekaterina L Clark, Caroline A Jefferies, Kate Lawrenson, Jessica L Chan, Nikhil V Joshi, Yazhen Zhu, Hsian-Rong Tseng, S. Ananth Karumanchi, John Williams III, Margareta D Pisarska

EBF1 limits the numbers of cochlear hair and supporting cells and forms the scala tympani and spiral limbus during inner ear development

Hiroki Kagoshima, Hiroe Ohnishi, Ryosuke Yamamoto, Akiyoshi Yasumoto, Yosuke Tona, Takayuki Nakagawa, Koichi Omori, Norio Yamamoto

A genetic program for vascular pericyte precursors

Sarah J Childs, Suchit Ahuja, Cynthia Adjekukor, Qing Li, Katrinka M Kocha, Nicole Rosin, Elodie Labit, Sarthak Sinha, Ankita Narang, Quan Long, Jeff Biernaskie, Peng Huang

GATA-regulated transcriptional program dictate cell fate equilibrium to establish the maternal-fetal exchange interface and fetal development

Anany Ghosh, Rajnish Kumar, Ram P. Kumar, Soma Ray, Abhik Saha, Namrata Roy, Purbasa Dasgupta, Courtney Marsh, Soumen Paul

Maternal regulation of the vertebrate oocyte-to-egg transition

Ricardo Fuentes, Florence Marlow, Elliott Abrams, Hong Zhang, Manami Kobayashi, TriptiGupta, Lee Kapp, Zachary DiNardo, Felipe Montecinos-Franjola, William Vought, Charles Vejnar, Antonio E Giraldez, Mary C Mullins

DNA conserved across animals that controls genes for embryonic development

Martin C. Frith, Shengliang Ni

TFAP2 paralogs regulate midfacial development in part through a conserved ALX genetic pathway

Timothy T Nguyen, Jennyfer M Mitchell, Michaela D Kiel, Kenneth L Jones, Trevor J Williams, James T Nichols, Eric Van Otterloo

Single-cell transcriptional landscapes of bovine peri-implantation development

Giovanna Nascimento Scatolin, Hao Ming, Yinjuan Wang, Linkai Zhu, Emilio Gutierrez Castillo, Kenneth Bondioli, Zongliang Jiang

Loss Of function of Male-Specific Lethal 3 (Msl3) Does Not Affect Spermatogenesis in Rodents

T.A. Mitchell, J.M. Lin, S.M. Hicks, J.R. James, P. Rangan, P.E. Forni

Cell Type- and Tissue-specific Enhancers in Craniofacial Development

Sudha Sunil Rajderkar, Kitt Paraiso, Maria Luisa Amaral, Michael Kosicki, Laura E. Cook, Fabrice Darbellay, Cailyn H. Spurrell, Marco Osterwalder, Yiwen Zhu, Han Wu, Sarah Yasmeen Afzal, Matthew J. Blow, Guy Kelman, Iros Barozzi, Yoko Fukuda-Yuzawa, Jennifer A. Akiyama, Veena Afzal, Stella Tran, Ingrid Plajzer-Frick, Catherine S. Novak, Momoe Kato, Riana D. Hunter, Kianna von Maydell, Allen Wang, Lin Lin, Sebastian Preissl, Steven Lisgo, Bing Ren, Diane E. Dickel, Len A. Pennacchio, Axel Visel

Combinatorial transcription factor binding encodes cis-regulatory wiring of forebrain GABAergic neurogenesis

Rinaldo Catta-Preta, Susan Lindtner, Athena Ypsilanti, James Price, Armen Abnousi, Linda Su-Feher, Yurong Wang, Ivan Juric, Ian R. Jones, Jennifer A. Akiyama, Ming Hu, Yin Shen, Axel Visel, Len A. Pennacchio, Diane Dickel, John L R Rubenstein, Alex S Nord

Transcriptomic profiling of murine GnRH neurons reveals developmental trajectories linked to human reproduction

Yassine Zouaghi, Daniel Alpern, Vincent Gardeux, Julie Russeil, Bart Deplancke, Federico Santoni, Nelly Pitteloud, Andrea Messina

Transcriptomic profiling of tissue environments critical for post-embryonic patterning and morphogenesis of zebrafish skin

Andrew J. Aman, Lauren M. Saunders, August A. Carr, Sanjay R. Srivatsan, Colten D. Eberhard, Blake Carrington, Dawn Watkins-Chow, William J. Pavan, Cole Trapnell, David M. Parichy

Maternal regulation of the vertebrate egg-to-embryo transition

Ricardo Fuentes, Florence L. Marlow, Elliott W. Abrams, Hong Zhang, Manami Kobayashi, Tripti Gupta, Lee D. Kapp, Zachary DiNardo, Ronald Heller, Ruth Cisternas, Felipe Montecinos-Franjola, William Vought, Mary C. Mullins

| Stem cells, regeneration & disease modelling

Antero-posterior gradients of cell plasticity and proliferation modulate posterior regeneration in the annelid Platynereis

Loic Bideau, Loeiza Baduel, Marianne Basso, Pascale Gilardi-Hebenstreit, Vanessa Ribes, Michel Vervoort, Eve Gazave

Incomplete Reprogramming of DNA Replication Timing in Induced Pluripotent Stem Cells

Matthew Micheal Edwards, Ning Wang, Dashiell Massey, Dieter Egli, Amnon Koren

Derivation of NT-ESCs, iPSCs, and ESCs from Edwards et al. This image is made available under a CC-BY-NC 4.0 International license.

Identification of signalling pathways involved in gill regeneration in zebrafish

Laura Cadiz, Maddison Reed, Simon Monis, Marie-Andree Akimenko, Michael G. Jonz

Setdb1 safeguards genome integrity in muscle stem cells to allow for regenerative myogenesis and inflammation

Pauline Garcia, William Jarassier, Caroline Brun, Lorenzo Giordani, Cécile Peccate, Fany Agostini, Wai Hing Kung, Tom H Cheung, Fabien Le Grand

Autonomous and non-cell autonomous etiology of ciliopathy associated structural birth defects

Richard Francis, Jovenal T San Agustin, Heather L. Szabo Rogers, Cheng Cui, Julie A. Jonassen, Thibaut Eguether, John A. Follit, Cecilia W. Lo, Gregory J. Pazour

DNA damage primes hematopoietic stem cells for direct megakaryopoiesis

Corey M. Garyn, Oriol Bover, John W. Murray, Ma Jing, Karen Salas-Briceno, Susan R Ross, Hans-Willem Snoeck

Mannose is crucial for mesoderm specification and symmetry breaking in gastruloids

Chaitanya Dingare, Jenny Yang, Ben Steventon

Negative cell cycle regulation by Calcineurin is necessary for proper beta cell regeneration in zebrafish

Laura Massoz, David Bergemann, Arnaud Lavergne, Célia Reynders, Caroline Désiront, Chiara Goossens, Lydie Flasse, Bernard Peers, Marianne L. Voz, Isabelle Manfroid

Compartmentalization and synergy of osteoblasts drive bone formation in the regenerating fin

N Cudak, AC López-Delgado, F Rost, T Kurth, M Lesche, S Reinhardt, A Dahl, S Rulands, F Knopf

Macrophages modulate fibrosis during newt lens regeneration

Georgios Tsissios, Anthony Sallese, J. Raul Perez-Estrada, Jared A. Tangeman, Weihao Chen, Byran Smucker, Sophia C. Ratvasky, Erika Grajales-Esquivel, Arielle Martinez, Kimberly J. Visser, Alberto Joven Araus, Hui Wang, Andras Simon, Maximina H. Yun, Katia Del Rio-Tsonis

 Newt eye at 4 days post-lentectomy from Tsissios et al. This image is made available under a CC-BY-NC 4.0 International license.

Chromatin and gene expression changes during female Drosophila germline stem cell development illuminate the biology of highly potent stem cells

Liang-Yu Pang, Steven DeLuca, Haolong Zhu, John M. Urban, Allan C. Spradling

Differential roles of diet on development and spinal cord regeneration in larval zebrafish

Emily J Puriofy, Karen Mruk

Effect of a retinoic acid analogue on BMP-driven pluripotent stem cell chondrogenesis

Fabrizio E. Mancini, Paul Evelyn Alexander Humphreys, Steven Woods, Nicola Bates, Sara Cuvertino, Julieta O’Flaherty, Leela Biant, Marco A.N. Domingos, Susan J. Kimber

Compensatory growth and recovery of tissue cytoarchitecture after transient cartilage-specific cell death in foetal mouse limbs

Chee Ho H’ng, Shanika L. Amarasinghe, Boya Zhang, Hojin Chang, David Powell, Alberto Rosello-Diez

Dissecting peri-implantation development using cultured human embryos and embryo-like assembloids

Zongyong Ai, Baohua Niu, Yu Yin, Lifeng Xiang, Gaohui Shi, Kui Duan, Sile Wang, Yingjie Hu, Chi Zhang, Chengting Zhang, Lujuan Rong, Ruize Kong, Tingwei Chen, Yixin Guo, Wanlu Liu, Nan Li, Shumei Zhao, Xiaoqing Zhu, Xuancheng Mai, Yonggang Li, Ze Wu, Yi Zheng, Jianping Fu, Weizhi Ji, Tianqing Li

Modelling Human Post-Implantation Development via Extra-Embryonic Niche Engineering

Joshua Hislop, Amir Alavi, Qi Song, Rayna Schoenberger, Kamyar Keshavarz F., Ryan LeGraw, Jeremy Velazquez, Tahere Mokhtari, Mohammad Nasser Taheri, Matthew Rytel, Susana M Chuva de Sousa Lopes, Simon Watkins, Donna Stolz, Samira Kiani, Berna Sozen, Ziv Bar-Joseph, Mo R. Ebrahimkhani

Transgene directed induction of a stem cell-derived human embryo model

Bailey AT Weatherbee, Carlos W Gantner, Riza M Daza, Nobuhiko Hamazaki, Lisa K. Iwamoto-Stohl, Jay Shendure, Magdalena Zernicka-Goetz

Gastruloid-derived Primordial Germ Cell-like Cells (Gld-PGCLCs) develop dynamically within integrated tissues

Christopher B. Cooke, Christopher Barrington, Peter Baillie-Benson, Jennifer Nichols, Naomi Moris

Ground-state pluripotent stem cells are characterized by Rac1-dependent Cadherin-enriched F-actin protrusions

Shiying Liu, Yue Meng, Pakorn Kanchanawong

Transgene-Free Ex Utero Derivation of A Human Post-Implantation Embryo Model Solely from Genetically Unmodified Naïve PSCs

Bernardo Oldak, Emilie Wildschutz, Vladyslav Bondarenko, Alejandro Aguilera-Castrejon, Cheng Zhao, Shadi Tarazi, Mehmet-Yunus Comar, Shahd Ashouokhi, Dmitry Lokshtanov, Francesco Roncato, Sergey Viukov, Eitan Ariel, Max Rose, Nir Livnat, Tom Shani, Carine Joubran, Roni Cohen, Yoseph Addadi, Merav Kedmi, Hadas Keren-Shaul, Sophie Petropoulos, Fredrik Lanner, Noa Novershtern, Jacob H. Hanna

A miRNA screen identifies a transcriptional program controlling adult stem cell maintenance in organoids

Jacques Robert, Efstathios Vlachavas, Gilles Lemaître, Aristotelis Chatziioannou, Michel Puceat, Frederic Delom, Delphine Fessart

Discovery of Competent Chromatin Regions in Human Embryonic Stem Cells

Julian Pulecio, Zakieh Tayyebi, Dingyu Liu, Wilfred Wong, Renhe Luo, Jeyaram R Damodaran, Samuel Kaplan, Hyunwoo Cho, Jielin Yan, Dylan Murphy, Robert W. Rickert, Abhijit Shukla, Aaron Zhong, Federico González, Dexin Yang, Wenbo Li, Ting Zhou, Effie Apostolou, Christina S. Leslie, Danwei Huangfu

Single Cell Transcriptomics-Informed Induced Pluripotent Stem Cells Differentiation to Tenogenic Lineage

Angela Papalamprou, Victoria Yu, Wensen Jiang, Julia Sheyn, Tina Stefanovic, Angel Chen, Chloe Castaneda, Melissa Chavez, Dmitriy Sheyn

Liver-specification of human iPSC-derived endothelial cells transplanted into mouse liver

Kiryu K. Yap, Jan Schröder, Yi-Wen Gerrand, Anne M. Kong, Adrian M. Fox, Brett Knowles, Simon W. Banting, Andrew G. Elefanty, Eduoard G. Stanley, George C. Yeoh, Glen P. Lockwood, Victoria C. Cogger, Wayne A. Morrison, Jose M. Polo, Geraldine M. Mitchell

Canonical Wnt and TGF-β/BMP signaling enhance melanocyte regeneration and suppress invasiveness, migration, and proliferation of melanoma cells

Esra Katkat, Yeliz Demirci, Guillaume Heger, Doga Karagulle, Irene Papatheodorou, Alvis Brazma, Gunes Ozhan

Establishment of a novel non-integrated human pluripotent stem cell-based gastruloid model

Gege Yuan, Jiachen Wang, Zhaode Liu, Mengqi Chen, Pinmou Zhu, Hao Zhang, Zhibin Hu, Yiqiang Cui, Yan Yuan, Jiahao Sha

Regeneration leads to global tissue rejuvenation in aging sexual planarians

Xiaoting Dai, Xinghua Li, Scott Pletcher, David Paris, Leonid Kruglyak, Jacob Sobota, Longhua Guo

Chromatin and gene expression changes during female Drosophila germline stem cell development illuminate the biology of highly potent stem cells

Liang-Yu Pang, Steven DeLuca, Haolong Zhu, John M. Urban, Allan C. Spradling

SRSF1-mediated alternative splicing of Tial1/Tiar is essential for homing and self-renewal in mouse spermatogonial stem cells

Longjie Sun, Zheng Lv, Xuexue Chen, Rong Ye, Shuang Tian, Chaofan Wang, Xiaomei Xie, Lu Yan, Xiaohong Yao, Yujing Shao, Sheng Cui, Juan Chen, Jiali Liu

| Plant development

Harnessing Deep Learning to Analyze Cryptic Morphological Variability of Marchantia polymorpha

Yoko Tomizawa, Naoki Minamino, Eita Shimokawa, Shogo Kawamura, Aino Komatsu, Takuma Hiwatashi, Ryuichi Nishihama, Takashi Ueda, Takayuki Kohchi, Yohei Kondo

Regulation of adaptive growth decisions via phosphorylation of the TRAPPII complex in Arabidopsis

Christian Wiese, Miriam Abele, Benjamin Al, Melina Altmann, Alexander Steiner, Nils Kalbfuss, Alexander Strohmayr, Raksha Ravikumar, Chan Ho Park, Barbara Brunschweiger, Chen Meng, Eva Facher, David W. Ehrhardt, Pascal Falter-Braun, Zhi-Yong Wang, Christina Ludwig, Farhah F. Assaad

Mapping the landscape of transcription factor promoter activity during vegetative development in Marchantia

Facundo Romani, Susanna Sauret-Güeto, Marius Rebmann, Davide Annese, Ignacy Bonter, Marta Tomaselli, Tom Dierschke, Mihails Delmans, Eftychios Frangedakis, Linda Silvestri, Jenna Rever, John L Bowman, Ignacio Romani, Jim Haseloff

Notch area in the Marchantia gemma from Romani et al. This image is made available under a CC-BY 4.0 International license.

ITPK1 regulates jasmonate-controlled root development in Arabidopsis thaliana

Naga Jyothi Pullagurla, Supritam Shome, Ranjana Yadav, Debabrata Laha

Comprehensive regulatory networks for tomato organ development based on the genome and RNAome of microTom tomato

Jia-Yu Xue, Hai-Yun Fan, Zhen Zeng, Yu-Han Zhou, Shuai-Ya Hu, Sai-Xi Li, Ying-Juan Cheng, Xiang-Ru Meng, Fei Chen, Zhu-Qing Shao, Yves Van de Peer

Single-cell transcriptomic analysis of pea shoot development and cell-type-specific responses to boron deficiency

Xi Chen, Yanqi Ru, Hirokazu Takahashi, Mikio Nakazono, Sergey Shabala, Steven M. Smith, Min Yu

Dynamics of the epigenetic landscape during development and in response to drought stress in sorghum

Yongfeng Hu, Chao He, Yuning Shen, Gongjian Zeng, Siteng Bi, Quanjun Huang, Xiner Qin, Zhuying Deng, Zhengquan He, Xiangling Shen

| Evo-devo

Evolution of the gene regulatory network of body axis by enhancer hijacking in amphioxus

Chenggang Shi, Shuang Chen, Huimin Liu, Shiqi Li, Yanhui Wang, Rongrong Pan, Xiaotong Wu, Xuewen Li, Jingjing Li, Chaofan Xing, Xian Liu, Yiquan Wang, Qingming Qu, Guang Li

Different stages of B. floridae embryos from Shi et al. This image is made available under a CC-BY 4.0 International license.

Co-evolutionary dynamics of mammalian brain and body size

Chris Venditti, Joanna Baker, Robert A Barton

A fitness landscape instability governs the morphological diversity of tip-growing cells

Maxim E. Ohairwe, Branka D. Živanović, Enrique R. Rojas

Expanding the Evo-Devo Toolkit: Generation of 3D mammary tissue from diverse mammals

Hahyung Y. Kim, Ishani Sinha, Karen E. Sears, Charlotte Kuperwasser, Gat Rauner

Dissecting genetic correlation through recombinant perturbations: the role of developmental bias

Haoran Cai, Kerry Geiler-Samerotte, David L. Des Marais

Cell Biology

Spatially and temporally distinct patterns of expression for VPS10P domain receptors in human cerebral organoids

Fabia Febbraro, Helena Hørdum Breum Andersen, Thomas E. Willnow

Mechanisms of Pathogenicity of Hypertrophic Cardiomyopathy-Associated Troponin T (TNNT2) Variant R278C+/- During Development

Sanam Shafaattalab, Alison Y Li, Farah Jayousi, Yasaman Maaref, Homa Hamledari, Dina Hosseini Baygi, Tiffany Barszczewski, Marvin Gunawan, Balwinder Ruprai, Shayan Jannati, Raghu Nagalingam, Austin M Cool, Paulina Langa, R John Solaro, Shubhayan Sanatani, Christopher Toepfer, Steffen Lindert, Philipp Lange, Glen F Tibbits

Epsilon tubulin is an essential determinant of microtubule-based structures in male germ cells

G. Gemma Stathatos, D. Jo Merriner, Anne E. O’Connor, Jennifer Zenker, Jessica E.M. Dunleavy, Moira K. O’Bryan

The proprotein convertase BLI-4 promotes collagen secretion during assembly of the Caenorhabditis elegans cuticle

Susanna K. Birnbaum, Jennifer D. Cohen, Alexandra Belfi, John I. Murray, Jennifer R.G. Adams, Andrew D. Chisholm, Meera V. Sundaram

Endodermal cells use contact inhibition of locomotion to achieve uniform cell dispersal during zebrafish gastrulation

Jesselynn LaBelle, Tom Wyatt, Stephanie Woo

Zebrafish endodermal cells from LaBelle et al. This image is made available under a CC-BY-NC-ND 4.0 International license.

Reorganization of the Flagellum Scaffolding Induces a Sperm Standstill Required for Fertilization

Martina Jablonski, Guillermina M Luque, Matias Gomez-Elias, Claudia Sanchez-Cardenas, Xinran Xu, Jose L de la Vega-Beltran, Gabriel Corkidi, Alejandro Linares, Victor Abonza, Dario Krapf, Diego Krapf, Alberto Darszon, Adan Guerrero, Mariano G Buffone

The ultrastructural nature of human oocytes’ cytoplasmatic abnormalities and the role of cytoskeleton dysfunction

Martina Tatíčková, Zuzana Trebichalská, Drahomíra Kyjovská, Pavel Otevřel, Soňa Kloudová, Zuzana Holubcová

Disruption of maternal ACKR3 has profound effects on embryos and offspring

Ayumi Fukuoka, Gillian J. Wilson, Elise Pitmon, Lily Koumbas Foley, Hanna Johnsson, Marieke Pingen, Gerard J. Graham

Embryonic origins of bipotent endothelial-macrophage progenitor cells in postnatal aorta

Anna E. Williamson, Sanuri Liyanage, Mohammadhossein Hassanshahi, Malathi S.I. Dona, Deborah Toledo-Flores, Dang X.A. Tran, Catherine Dimasi, Nisha Schwarz, Sanuja Fernando, Thalia Salagaras, Aaron Long, Jan Kazenwadel, Natasha L. Harvey, Grant R. Drummond, Antony Vinh, Vashe Chandrakanthan, Ashish Misra, Zoltan Neufeld, Joanne T.M. Tan, Luciano Martelotto, Jose M. Polo, Claudine S. Bonder, Alexander R. Pinto, Shiwani Sharma, Stephen J. Nicholls, Christina A. Bursill, Peter J. Psaltis

Spatiotemporal cell landscape of human embryonic tooth development

Yueqi Shi, Yejia Yu, Jutang Li, Shoufu Sun, Li Han, Shaoyi Wang, Ke Guo, Jingang Yang, Wenjia Wei, Jin Qiu

Role of BicDR in bristle shaft construction, tracheal development, and support of BicD functions

Aleksandra Jejina, Yeniffer Ayala, Greco Hernández, Beat Suter

Wg/Wnt-signaling induced nuclear translocation of β-catenin is attenuated by a β-catenin peptide through its interaction with IFT-A in development and cancer cells

Linh T. Vuong, Marek Mlodzik

COP9 signalosome component CSN-5 stabilizes PUF proteins FBF-1 and FBF-2 in Caenorhabditis elegans germline stem cells

Emily Osterli, Mary Ellenbecker, Xiaobo Wang, Mikaya Terzo, Ketch Jacobson, DeAnna Cuello, Ekaterina Voronina

Mutant analysis of Kcng4b reveals how the different functional states of the voltage-gated potassium channel regulate ear development

Justyna Jędrychowska, Vitya Vardanyan, Milosz Wieczor, Antoni Marciniak, Jacek Czub, Razieh Amini, Ruchi Jain, Hongyuan Shen, Hyungwon Choi, Jacek Kuznicki, Vladimir Korzh

Modelling

Deep learning pipeline reveals key moments in human embryonic development predictive of live birth in IVF

Camilla Mapstone, Helen Hunter, Daniel Brison, Julia Handl, Berenika Plusa

Cell jamming and unjamming in development: physical aspects

Ivana Pajic-Lijakovic, Milan Milivojevic

Modeling soybean growth: A mixed model approach

Maud Delattre, Yusuke Toda, Jessica Tressou, Hiroyoshi Iwata

The Core & Periphery Hypothesis: A Conceptual Basis for Generality in Cell and Developmental Biology

Elisa Gallo, Stefano De Renzis, James Sharpe, Roberto Mayor, Jonas Hartmann

Tools & Resources

Accurate staging of chick embryonic tissues via deep learning

Ian Groves, Jacob Holmshaw, David Furley, Matthew Towers, Benjamin D. Evans, Marysia Placzek, Alexander G. Fletcher

Morphological changes in the chick embryo brain from Groves et al. This image is made available under a CC-BY 4.0 International license.

But, what are the cells doing? Image Analysis pipeline to follow single cells in the zebrafish embryo

Arianne Bercowsky-Rama, Olivier F. Venzin, Laurel A. Rohde, Nicolas Chiaruttini, Andrew C. Oates

Zebrahub – Multimodal Zebrafish Developmental Atlas Reveals the State-Transition Dynamics of Late-Vertebrate Pluripotent Axial Progenitors

Merlin Lange, Alejandro Granados, Shruthi VijayKumar, Jordão Bragantini, Sarah Ancheta, Sreejith Santhosh, Michael Borja, Hirofumi Kobayashi, Erin McGeever, Ahmet Can Solak, Bin Yang, Xiang Zhao, Yang Liu, Angela M. Detweiler, Sheryl Paul, Honey Mekonen, Tiger Lao, Rachel Banks, Yang-Joon Kim, Adrian Jacobo, Keir Balla, Kyle Awayan, Samuel D’Souza, Robert Haase, Alexandre Dizeux, Olivier Pourquie, Rafael Gómez-Sjöberg, Greg Huber, Mattia Serra, Norma Neff, Angela Oliveira Pisco, Loïc A. Royer

Zebrahub’s scRNAseq experimental pipeline from Lange et al. This image is made available under a CC-BY-NC-ND 4.0 International license.

A Highly Efficient Aorta-Gonad-Mesonephros-Like Definitive Hemogenic Endothelium From Human Pluripotent Stem Cells

Yesai Fstkchyan, Qingwen Cheng, Jingli Zhang, Daniel Lu, Guanyi Huang, Tiange Dong, Lauren Jones, Matt Kanke, Chris Hale, Kristin Tarbell, Chi-Ming Li, Songli Wang, Stuart M. Chambers

Endogenous tagging using split mNeonGreen in human iPSCs for live imaging studies

Mathieu C. Husser, Nhat P. Pham, Chris Law, Flavia R. B. Araujo, Vincent J.J. Martin, Alisa Piekny

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Categories: Highlights, Research

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Most-read posts in May

Do you have any news to share?

Our ‘Developing news’ posts celebrate the various achievements of the people in the developmental and stem cell biology community. Let us know if you would like to share some news.