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April in preprints

Posted by , on 3 May 2018

Another bumper month for developmental biology and related preprints, this time featuring spiders, lampreys, amphiouxus and plenty of zebrafish, worm and fly research. Also a big month for fans of Sox genes, which turned up in the title of five preprints! My visual highlight is the preprint from David Parichy’s group on zebrafish scale development – well worth downloading the PDF to gawp at the imaging.

The preprints were hosted on bioRxivPeerJ, and arXiv. Use these links to get to the section you want:

 

Developmental biology

Patterning & signalling

Morphogenesis & mechanics

Genes & genomes

Stem cells, regeneration & disease modelling

Evo-devo & evo
Cell biology
Modelling
Tools & resources

Imaging etc.

| Genome tools

Research practice & education
Why not…

 

Developmental biology

| Patterning & signalling

Zebrafish scale development in Aman, et al.’s preprint

 

Wnt/β-catenin regulates an ancient signaling network during zebrafish scale development
Andrew J Aman, Alexis N Fulbright, David M Parichy

 

Endothelin receptor Aa regulates proliferation and differentiation of Erb-dependant pigment progenitors in zebrafish
Karen Camargo Sosa, Sarah Colanesi, Jeanette Muller, Stefan Schulte-Merker, Derek Stemple, E. Elizabeth Patton, Robert N Kelsh

 

Naa15 knockdown enhances c2c12 myoblast fusion and induces defects in zebrafish myotome morphogenesis
Olivier Monestier, Aurelie Landemaine, Jerome Bugeon, Pierre-Yves Rescan, Jean-Charles Gabillard

 

A panel of zebrafish embryos from Kirchgeorg, et al.’s preprint

 

Cre/lox-controlled spatio-temporal perturbation of FGF signaling in zebrafish
Lucia Kirchgeorg, Anastasia Felker, Elena Chiavacci, Christian Mosimann

 

Specific miRNA-GPCR networks regulate Sox9a/Sox9b activities to promote gonadal renewal in zebrafish
Jizhou Yan, Xinlu Du, Huiping Guo, Ying Zhang, Jiacheng Wu, Mingyou Li, Xianxin Hu

 

Discovery of a new path for red blood cell generation in the mouse embryo
Irina Pinheiro, Ozge Vargel Bolukbasi, Kerstin Ganter, Laura A. Sabou, Vick Key Tew, Giulia Bolasco, Maya Shvartsman, Polina V. Pavlovich, Andreas Buness, Christina Nikolakopoulou, Isabelle Bergiers, Valerie Kouskoff, Georges Lacaud, Christophe Lancrin

 

Rainbow-seq: combining cell lineage tracking with single-cell RNA sequencing in preimplantation embryos
Fernando Biase, Qiuyang Wu, Riccardo Calandrelli, Marcelo Rivas-Astroza, Shuigeng Zhou, Sheng Zhong

 

Radial glial lineage progression and differential intermediate progenitor amplification underlie striatal compartments and circuit organization
Sean Michael Kelly, Miao He, Jannifer Lee, Yongsoo Kim, Leif Garrison Gibb, Priscilla Wu, Katie Matho, Pavel Osten, Ann Martin Graybiel, Z. Josh Huang

 

Ankyrin-G Regulates Forebrain Connectivity and Network Synchronization via Interaction with GABARAP
Andrew D Nelson, René N Caballero-Florán, Jean Carlos Rodríguez Díaz, Jianchao Li, Keyu Chen, Kathryn K Walder, Vann Bennett, Luis F Lopez-Santiago, Melvin G McInnis, Lori L Isom, Chao Wang, Mingjie Zhang, Kevin S Jones, Paul M Jenkins

 

Yap regulates glucose utilization and sustains nucleotide synthesis to enable organ growth
Andrew Cox, Allison Tsomides, Dean Yimlamai, Katie Hwang, Joel Miesfeld, Giorgio Galli, Brendan Fowl, Michael Fort, Kimberly Ma, Mark Sullivan, Aaron Hosios, Erin Snay, Min Yuan, Kristin Brown, Evan Lien, Sagar Chhangawala, Matthew Steinhauser, John Asara, Yariv Houvras, Brian Link, Matthew Vander Heiden, Fernando Camargo, Wolfram Goessling

 

Deletion of YAP/TAZ in mouse neocortex impaired the proliferation and differentiation ability of neural progenitor cells
Shanshan Kong

 

The Hippo pathway effector Taz is required for cell fate specification and fertilization in zebrafish
Chaitanya Dingare, Alina Niedzwetzki, Petra A Klemmt, Svenja Godbersen, Ricardo Fuentes, Mary C Mullins, Virginie Lecaudey

 

Spinal cord neurogenesis in Le Dréau, et al.’s preprint

 

E proteins differentially co-operate with proneural bHLH transcription factors to sharpen neurogenesis
Gwenvael Le Dréau, René Escalona, Raquel Fueyo, Antonio Herrera, Juan D Martínez, Susana Usieto, Anghara Menendez, Sebastián Pons, Marian A Martinez-Balbas, Elisa Marti

 

Mkk4 and Mkk7 are important for retinal development and axonal injury-induced retinal ganglion cell death
Rebecca L Rausch, Stephanie B Syc, Kimberly A Fernandes, Michael P Wilson, Richard T Libby

 

Non-cell autonomous Otx2 homeoprotein regulates visual cortex plasticity through Gadd45b/g
Jessica Apulei, Namsuk Kim, Damien Testa, Jérôme Ribot, David Morizet, Clémence Bernard, Laurent Jourdren, Corinne Blugeon, Ariel A. Di Nardo, Alain Prochiantz

 

Single-Cell RNA-seq Reveals a Subpopulation of Cells Underlying β Cell Expansion in the Postnatal Islets
Jingli A Zhang, Chunyan Gu, Derek K Smith, Monica Kong-Beltran, Noelyn Kljavin, Ngu Hai, Rowena Suriben, Stinson Jeremy, Zora Modrusan, Andrew S Peterson

 

Sox4 drives Atoh1-independent intestinal secretory differentiation toward tuft and enteroendocrine fates
Adam Gracz, Leigh Ann Samsa, Matthew J. Fordham, Danny C. Trotier, Bailey Zwarycz, Yuan-Hung Lo, Katherine Bao, Joshua Starmer, Noah F. Shroyer, Richard L. Reinhardt, Scott T. Magness

 

Secondary neurulation-fated cells in the tail bud undergo self-renewal and tubulogenesis regulated by a Sox2 gradient
Teruaki Kawachi, Eisuke Shimokita, Ryosuke Tadokoro, Yoshiko Takahashi

 

3 minutes to precisely measure morphogen concentration
Tanguy Lucas, Huy Tran, Carmina Angelica Perez Romero, Aurelien Guillou, Cecile Fradin, Mathieu Coppey, Aleksandra M Walczak, Nathalie Dostatni

 

EM in the fly brain from Andrade, et al.’s preprint

 

Developmentally arrested precursors of pontine neurons establish an embryonic blueprint of the Drosophila central complex
Ingrid V Andrade, Nadia Riebli, Bao-Chau M Nguyen, Jaison J Omoto, Richard D Fetter, Albert Cardona, Volker Hartenstein

 

Temporal development of Drosophila embryos is highly robust across a wide temperature range
Jeronica Chong, Christopher Amourda, Timothy E Saunders

 

A panel of malformed fly eyes from Li & Fan’s preprint

 

The Drosophila TNF Eiger activates caspase-dependent necrosis when apoptosis is blocked
Mingli Li, Yun Fan

 

C. elegans RAP-1 reinforces LET-60/Ras induction of cell fate
Neal R Rasmussen, Daniel J Dickinson, David J Reiner

 

Auxin is not asymmetrically distributed in initiating Arabidopsis leaves
Neha Bhatia, Marcus G Heisler

 

Many rice genes are differentially spliced between roots and shoots but cytokinin hormone application has minimal effect on splicing
Nowlan Freese, April D. Estrada, Ivory C. Blakley, Jinjie Duan, Ann E. Loraine

 

| Morphogenesis & mechanics

Tissue flow induces cell shape changes during organogenesis
Gonca Erdemci-Tandogan, Madeline J Clark, Jeffrey D Amack, M. Lisa Manning

 

Tracking mandibular arch cell rearrangements in Tao, et al.’s preprint

 

Oscillatory cortical forces promote three dimensional cell intercalations that shape the mandibular arch
Hirotaka Tao, Min Zhu, Kimberly Lau, Owen Whitley, Mohammad Samani, Xiao Xiao, Xiao Xiao Chen, Noah A. Hahn, Weifan Liu, Megan Valencia, Min Wu, Xian Wang, Kelli D. Fenelon, Clarissa C. Pasiliao, Di Hu, Jinchun Wu, Shoshana Spring, James Ferguson, Edith P. Karuana, R. Mark Henkelman, Alexander Dunn, Huaxiong Huang, Hsin-Yi Henry Ho, Radhika Atit, Sidhartha Goyal, Yu Sun, Sevan Hopyan

 

Tracking development of the zebrafish retina, from Matejcic, et al.’s preprint

 

A non-cell autonomous actin redistribution enables isotropic retinal growth
Marija Matejcic, Guillaume Salbreux, Caren Norden

 

Tricellular junction proteins promote disentanglement of daughter and neighbour cells during epithelial cytokinesis
Zhimin Wang, Floris Bosveld, Yohanns Bellaiche

 

A super-res view of fly intermediate fly muscles from Green, et al.’s preprint

 

Novel functions for integrin-associated proteins revealed by myofibril attachment in Drosophila
Hannah Jane Green, Annabel Griffiths, Nicholas Brown

 

Physical and functional cell-matrix uncoupling in a developing tissue under tension
Amsha Proag, Bruno Monier, Magali Suzanne

 

Radially-patterned cell behaviours during tube budding from an epithelium
Yara Elena Sanchez-Corrales, Guy B. Blanchard, Katja Roeper

 

An intrinsic cell cycle timer terminates limb bud outgrowth
Joseph Pickering, Kavitha Chinnaiya, Constance A Rich, Patricia Saiz-Lopez, Marian A Ros, Matthew Towers

 

Neuromesodermal Progenitors are a Conserved Source of Spinal Cord with Divergent Growth Dynamics
Andrea Attardi, Tim Fulton, Maria Florescu, Gopi Shah, Leila Muresan, Jan Huisken, Alexander van Oudenaarden, Benjamin Steventon

 

Differential requirements of tubulin genes in mammalian forebrain development.

Elizabeth Bittermann, Ryan P. Liegel, Chelsea Menke, Andrew Timms, David R Beier, Beth Kline-Fath, Howard M Saal, Rolf Stottmann

 

Cerebellar nuclei neurons dictate growth of the cortex through developmental scaling of presynaptic Purkinje cells
Alexandra L Joyner, Ryan T Willett, Alexandre Wojcinski, Nermin Sumru Bayin, Zhimin Lao, Daniel Stephen, Katherine L Dauber-Decker, Zhuhao Wu, Marc Tessier-Lavigne, Hiromitsu Saito, Noboru Suzuki

 

Travelling waves in somitogenesis: collective cellular properties emerge from time-delayed juxtacrine oscillation coupling
Tomas Tomka, Dagmar Iber, Marcelo Boareto

 

Size-reduced embryos reveal a gradient scaling based mechanism for zebrafish somite formation
Kana Ishimatsu, Tom W Hiscock, Zach M Collins, Dini Wahyu Kartika Sari, Kenny Lischer, David L. Richmond, Yasumasa Bessho, Takaaki Matsui, Sean G Megason

 

The mechanical impact of col11a2 loss on joints; col11a2 mutant zebrafish show changes to joint development and function which lead to early onset osteoarthritis
Elizabeth Lawrence, Erika Kague, Jessye A Aggleton, Robert L Harniman, Karen A Roddy, Chrissy L Hammond

 

Dual spindle formation in zygotes keeps parental genomes apart in early mammalian embryos
Judith Reichmann, Bianca Nijmeijer, M. Julius Hossain, Manuel Eguren, Isabell Schneider, Antonio Z. Politi, M. Julia Roberti, Lars Hufnagel, Takashi Hiiragi, Jan Ellenberg

 

The E3 ubiquitin ligase MIB-1 is necessary to form the nuclear halo in C. elegans sperm
Leslie A Herrera, Daniel A Starr

 

C. elegans embryos from Fan, et al.’s preprint

 

A multicellular rosette-mediated collective dendrite extension
Li Fan, Ismar Kovacevic, Maxwell Heiman, Zhirong Bao

 

UNC-6/Netrin and its Receptors UNC-5 and UNC-40/DCC Control Growth Cone Polarity, Microtubule Accumulation, and Protrusion
Mahekta R. Gujar, Lakshmi Sundararajan, Aubrie M. Stricker, Erik A. Lundquist

 

Repulsive Guidance Molecule Acts in Axon Branching in Caenorhabditis elegans
Kaname Tsutsui, Hon-Song Kim, Yukihiko Kubota, Yukimasa Shibata, Chenxi Tian, Jun Liu, Kiyoji Nishiwaki

 

Pioneer facial axons in the muse hindbrain from Gruner, et al.’s preprint

 

Robo1 and 2 repellent receptors cooperate to guide facial neuron cell migration and axon projections in the embryonic mouse hindbrain
Hannah N Gruner, Minkyung Kim, Grant S Mastick

 

Genetic contributions to ectopic sperm cell migration in Caenorhabditis nematodes
Janice J. Ting, Caressa N. Tsai, Asher D Cutter

 

| Genes & genomes

Frog embryos from Gentsch, et al.’s preprint

 

Maternal pluripotency factors prime the zygotic genome to respond to intercellular signals
George E Gentsch, Thomas Spruce, Nick D L Owens, Jim C Smith

 

Maternal Plag1 deficiency delays zygotic genome activation and two-cell stage embryo development
Elo Madissoon, Anastasios Damdimopoulos, Shintaro Katayama, Kaarel Krjutskov, Elisabet Einarsdottir, Katariina Mamia, Bert De Groef, Outi Hovatta, Juha Kere, Pauliina Damdimopoulou

 

Small RNAs gained during epididymal transit of sperm are essential for embryonic development in mice
Colin Conine, Fengyun Sun, Lina Song, Jaime Rivera-Perez, Oliver Randome

 

Craniofacial consequences of HoxB1 overexpression in Zaffran, et al.’s preprint

 

Ectopic expression of Hoxb1 induces cardiac and craniofacial malformations
Stéphane Zaffran, Gaëlle Odelin, Sonia Stefanovic, Fabienne Lescroart, Heather C Etchevers

 

Mouse embryonic stem cells from Sun, et al.’s preprint

 

Mettl14 is required for mouse post-implantation development by facilitating epiblast maturation
Qing-Yuan Sun, Tie Gang Meng, Xukun Lu, Lei Guo, Guan Mei Hou, Qian Nan Li, Xue Shan Ma, Lin Huang, Li Hua Fan, Zheng Hui Zhao, Xiang Hong Ou, Ying Chun Ouyang, Heide Schatten, Lei Li, Zhen Bo Wang

 

foxr1 is a novel maternal-effect gene in fish that regulates embryonic cell growth via p21 and rictor
Caroline Cheung, Amelie Patinote, Yann Guiguen, Julien Bobe

 

Assessing chromatin organisation in differentiating neurons, from Malysheva, et al.’s preprint

 

Highly dynamic chromatin interactions drive neurogenesis through gene regulatory networks

Valeriya Malysheva, Marco Antonio Mendoza-Parra, Matthias Blum, Hinrich Gronemeyer

 

Scarlet Runner and Common Beans in Henry, et al.’s preprint

 

A shared cis-regulatory module activates transcription in the suspensor of plant embryos
Kelli F. Henry, Anhthu Q. Bui, Tomokazu Kawashima, Robert B. Goldberg

 

Maintenance of Cell Fates by Regulation of the Histone Variant H3.3 in Caenorhabditis elegans
Yukimasa Shibata, KIyoji Nishiwaki

 

Transgenerational sterility of Piwi pathway mutants in response to germ granule dysfunction
Katherine Kretovich Billmyre, Bree Heestand, Maya Spichal, Stephen Frenk, Shawn Ahmed

 

Developmentally regulated transcription and silencing cycle of nuclear RNAi-targeted LTR retrotransposons in Caenorhabditis elegans
Julie Zhouli Ni, Natallia Kalinava, Sofia Galindo Mendoza, Sam Guoping Gu

 

A cytoplasmic Argonaute protein promotes the inheritance of RNAi
Fei Xu, Xuezhu Feng, Xiangyang Chen, Chenchun Weng, Qi Yan, Ting Xu, Minjie Hong, Shouhong Guang

 

Key role of piRNAs in telomeric chromatin maintenance and telomere nuclear positioning in Drosophila germline
Elizaveta Radion, Valeriya Morgunova, Sergei Ryazansky, Natalia Akulenko, Sergey Lavrov, Yuri Abramov, Pavel Komarov, Sergey Glukhov, Ivan Olovnikov, Alla Kalmykova

 

A panel of C. elegans from Chisnell, et al.’s preprint

 

Rescue of a developmental arrest caused by a C. elegans heat-shock transcription-factor mutation by loss of ribosomal S6-kinase activity
Peter Jacob Daub Chisnell, T. Richard Parenteau, Elizabeth M Tank, Kaveh Ashrafi, Cynthia Kenyon

 

Drosophila mef2 is essential for normal mushroom body and wing development.
Jill R Crittenden, Efthimios M Skoulakis, Elliott S Goldstein, Ronald L Davis

 

Muscleblind regulates Drosophila Dscam2 cell-type-specific alternative splicing
Joshua Shing Shun Li, S Sean Millard

 

Sequential regulation of maternal mRNAs through a conserved cis-acting element in their 3′ UTRs
Pooja Flora, Siu Wah Wong-Deyrup, Elliot Martin, Ryan Palumbo, Mohamad Nasrallah, Andrew Oligney, Patrick Blatt, Dhruv Patel, Gabriele Fuchs, Prashanth Rangan

 

The histone demethylase KDM5 is essential for larval growth in Drosophila
Julie Secombe, Coralie Drelon, Helen M Belalcazar

 

A Cut/cohesin axis alters the chromatin landscape to facilitate neuroblast death
Richa Arya, Seda Gyonjyan, Katherine Harding, Tatevik Sarkissian, Ying Li, Lei Zhou, Kristin White

 

H3.3K4M destabilizes enhancer epigenomic writers MLL3/4 and impairs adipose tissue development
Younghoon Jang, Chaochen Wang, Aaron Broun, Young-Kwon Park, Lenan Zhuang, Ji-Eun Lee, Eugene Froimchuk, Chengyu Liu, Kai Ge

 

Extensive cellular heterogeneity of X inactivation revealed by single-cell allele-specific expression in human fibroblasts.
Marco Garieri, Georgios Stamoulis, Emilie Falconnet, Pascale Ribaux, Christelle Borel, Federico A Santoni, Stylianos E Antonarakis

 

Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs
Yue Huang, Xiaoxu Yang, Sheng Wang, Xianing Zheng, Qixi Wu, Yongxin Ye, Liping Wei

 

Robustness of bristle number to temperature and genetic background varies with bristle type and is regulated by miR-9a.
Alexis Matamoro-Vidal, Thomas Tully, Virginie Courtier-Orgogozo

 

A transmissible RNA pathway in honey bees
Eyal Maori, Yael Garbian, Vered Kunik, Rita Mozes-Koch, Osnat Malka, Haim Kalev, Niv Sabath, Ilan Sela, Sharoni Shafir

 

Senescence of multicellular individuals: imbalance of epigenetic and non-epigenetic information in histone modifications
Felipe A. Veloso

 

Rbfox1 mediates cell-type-specific splicing in cortical interneurons
Xavier Hubert Jaglin, Brie Wamsley, Emilia Favuzzi, Guilia Quattracolo, Maximiliano Negro, Nusrath Yusef, Alireza Khodadadi-Jamayran, Bernardo Rudy, Gordon Fishell

 

 

| Stem cells, regeneration & disease modelling

The Drosophila midgut, from Gulteki & Steller’s preprint

 

Axin proteolysis by Iduna is required for the regulation of stem cell proliferation and intestinal homeostasis in Drosophila
Yetis Gultekin, Hermann Steller

 

In vivo Chemical Reprogramming of Astrocytes into Functional Neurons
Yantao Ma, Handan Xie, Xiaomin Du, Lipeng Wang, Xueqin Jin, Shicheng Sun, Yanchuang Han, Yawen Han, Jun Xu, Zhuo Huang, Zhen Chai, Hongkui Deng

 

Invesatigating adult neurogenesis in Youssef, et al.’s preprint

 

Ablation of proliferating neural stem cells during early life is sufficient to reduce adult hippocampal neurogenesis
Mary Youssef, Varsha S Krish, Greer S. Kirshenbaum, Piray Atsak, Tamara J Lass, Sophie R Lieberman, E. David Leonardo, Alex Dranovsky

 

Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions
Daniel Strebinger, Elias T Friman, Cedric Deluz, Subashika Govindan, Andrea B Alber, David M Suter

 

Implantation-Competent Blastocyst-Like Structures from Mouse Pluripotent Stem Cells
Cody Kime, Hiroshi Kiyonari, Satoshi Ohtsuka, Eiko Kohbayashi, Michio Asahi, Shinya Yamanaka, Masayo Takahashi, Kiichiro Tomoda

 

Single-cell analysis identifies EpCAM+/CDH6+/TROP-2- cells as human liver progenitors.
Joe M Segal, Daniel J Wesche, Maria Paola Serra, Bénédicte Oulés, Deniz Kent, Soon Seng Ng, Gozde Kar, Guy Emerton, Samuel Blackford, Spyros Darmanis, Rosa Miquel, Tu Vinh, Ryo Yamamoto, Andrew Bonham, Alessandra Vigilante, Sarah Teichmann, Stephen R Quake, Hiromitsu Nakauchi, S Tamir Rashid

 

Onset of differentiation is posttranscriptionally controlled in adult neural stem cells
Avni Baser, Yonglong Dang, Maxim Skabkin, Guelce Guelcueler Balta, Georgios Kalamakis, Susanne Kleber, Manuel Goepferich, Roman Schefzik, Alejandro Santos Lopez, Enric Llorens Bobadilla, Carsten Schultz, Bernd Fischer, Ana Martin-Villalba

 

Human stem cell resources are an inroad to Neandertal DNA functions
Michael Dannemann, Benjamin Vernot, Svante Paabo, Janet Kelso, J. Gray Camp

 

Targeted Reactivation of FMR1 Transcription in Fragile X Syndrome Embryonic Stem Cells
Jill Haenfler, Geena Skariah, Caitlin M Rodriguez, Andre Monteiro Da Rocha, Jack Parent, Gary D Smith, Peter K Todd

 

Telomere length set point regulation in human pluripotent stem cells critically depends on the shelterin protein TPP1
John Michael Boyle, Kelsey M Hennick, Samuel G Regalado, Jacob Vogan, Xiaozhu Zhang, Kathleen Collins, Dirk Hockemeyer

 

Induction of muscle stem cell quiescence by the secreted niche factor Oncostatin M
Srinath C Sampath, Srihari C Sampath, Andrew TV Ho, Stephane Y Corbel, Joshua D Millstone, John Lamb, John Walker, Bernd Kinzel, Christian Schmedt, Helen M Blau

 

Conversion of iPS derived hepatic progenitors into scalable, functional and developmentally relevant human organoids using an inverted colloidal crystal poly (ethylene glycol) scaffold engineered from collagen-coated pores of defined size
Soon Seng Ng, Kourosh Saeb-Parsy, Joe M Segal, Maria Paola Serra, Samuel J I Blackford, Marta Horcas Lopez, Da Yoon No, Curtis W Frank, Nam Joon Cho, Hiromitsu Nakauchi, Jeffrey S Glenn, S Tamir Rashid

 

Controlled cycling and quiescence enables homology directed repair in engraftment-enriched adult hematopoietic stem and progenitor cells
Jiyung Shin, Stacia K Wyman, Mark A DeWitt, Nicholas L Bray, Jonathan Vu, Jacob Corn

 

Circular RNA expression in human hematopoietic cells is widespread and cell-type specific
Benoit P Nicolet, Sander Engels, Francesca Aglialoro, Emile van den Akker, Marieke M von Lindern, Monika C Wolkers

 

Validation of a library of cGMP-compliant human pluripotent stem cell lines for use in liver therapy
Samuel J I Blackford, Soon Seng Ng, Joe M Segal, Aileen J F King, Jennifer Moore, Michael Sheldon, Dusko Ilic, Anil Dhawan, Ragai Mitry, S Tamir Rashid

 

Diverse progenitor cells preserve salivary gland ductal architecture after radiation induced damage
Alison May, Noel Cruz Pacheco, Elaine Emmerson, Kerstin Siedel, Sara Nathan, Marcus O Muench, Ophir D Klein, Sarah M Knox

 

Cycles of gene expression and genome response during mammalian tissue regeneration
Leonor Rib, Dominic Villeneuve, Viviane Praz, Nouria Hernandez, Nicolas Guex, Winship Herr, CycliX Consortium

 

Hepatocyte Nuclear Factor 4 alpha (HNF4α) Activation is Essential for Termination of Liver Regeneration
Ian Huck, Sumedha Gunewardena, Regina Espanol-Suner, Holger Willenbring, Udayan Apte

 

The Amyloid Precursor-like Protein APL-1 Regulates Axon Regeneration
Lewie Zeng, Rachid El Bejjani, Marc Hammarlund

 

Enhanced Neurite Outgrowth and Regeneration in ALS Resistant Motor Neurons from SOD1 Mutant Mouse Models
Zachary B Osking, Jacob I Ayers, Ryan Hildebrandt, Kristen Skruber, Amanda R Eukovich, Hilda Brown, Danny Ryu, Todd E Golde, David R Borchelt, Tracy-Ann Read, Eric Vitriol

 

Functional repair after ischemic injury through high efficiency in situ astrocyte-to-neuron conversion
Yuchen Chen, Ningxin Ma, Zifei Pei, Zheng Wu, Fabricio H Do-Monte, Pengqian Huang, Emma Yellin, Miranda Chen, Jiuchao Yin, Grace Lee, Angelica Minier, Yi Hu, Yuting Bai, Kathryn Lee, Gregory Quirk, Gong Chen

 

Hair regeneration by small molecules that activate autophagy
Min Chai, Meisheng Jiang, Laurent Vergnes, Xudong Fu, Stephanie C de Barros, Jing Jiao, Harvey R Herschman, Gay M Crooks, Karen Reue, Jing Huang

 

Growth plates of the tibia from Hubmacher, et al.’s preprint

 

Limb- and tendon-specific Adamtsl2 deletion identifies a soft tissue mechanism modulating bone length

Dirk Hubmacher, Stetson Thacker, Sheila M Adams, David Birk, Ronen Schweitzer, Suneel Apte

 

Evo-devo & evo

Whole mount spider embryos from Paese, et al.’s preprint

 

A SoxB gene acts as an anterior gap gene and regulates posterior segment addition in the spider Parasteatoda tepidariorum
Christian L. B. Paese, Anna Schoenauer, Daniel J. Leite, Steven Russell, Alistair P. McGregor

 

Probing the origin of matching functional jaws: roles of Dlx5/6 in cranial neural crest cells.
Miki Shimizu, Nicolas Narboux-Nême, Yorick Gitton, Camille de Lombares, Anastasia Fontaine, Gladys Alfama, Taro Kitazawa, Yumiko Kawamura, Eglantine Heude, Lindsey Marshall, Hiroki Higashiyama, Youichiro Wada, Yukiko Kurihara, Hiroki Kurihara, Giovanni Levi

 

Hes-B expression in the developing lamprey, from, Lara-Ramierez, et al.’s preprint

 

A Notch-regulated proliferative stem cell zone in the developing spinal cord is an ancestral vertebrate trait
Ricardo Lara-Ramirez, Carlos Perez-Gonzalez, Chiara Anselmi, Cedric Patthey, Sebastian M Shimeld

 

Neuropeptide expression in the amphioxus nervous system, from Gutierrez, et al.’s preprint

 

Patterning of a telencephalon-like region in the adult brain of amphioxus
Elia Benito Gutierrez, Manuel Stemmer, Silvia D Rohr, Laura N Schumacher, Jocelyn Tang, Aleksandra Marconi, Gaspar Jekely, Detlev Arendt

 

A revised understanding of Tribolium morphogenesis further reconciles short and long germ development
Matthew Alan Benton

 

Insect wings and body wall evolved from ancient leg segments
Heather S Bruce, Nipam H Patel

 

Evidence for multifactorial processes underlying phenotypic variation in bat visual opsins
Alexa Sadier, Kalina Davies, Laurel Yohe, Kun Yun, Paul Donat, Brandon P Hedrick, Elizabeth Dumont, Liliana Davalos, Stephen Rossiter, Karen E Sears

 

Horizontally transferred genes in the ctenophore Mnemiopsis leidyi

Alexandra M Hernandez, Joseph F Ryan

 

The genetic architecture of shoot and root trait divergence between upland and lowland ecotypes of a perennial grass.
Albina Khasanova, John T. Lovell, Jason E. Bonnette, Jerry Jenkins, Yuko Yoshinaga, Jeremy Schmutz, Thomas E. Juenger

 

Recombination rate variation shapes barriers to introgression across butterfly genomes
Simon H. Martin, John Davey, Camilo Salazar, Chris Jiggins

 

Gene regulatory mechanisms underlying the evolutionary loss of a polygenic trait
Mark Lammers, Ken Kraaijeveld, Janine Mariën, Jacintha Ellers

 

Cell biology

The Drosophila midgut in Chen, et al.’s preprint

 

An alternative mode of epithelial polarity in the Drosophila midgut
Jia Chen, Aram-Christopher Sayadian, Nick Lowe, Holly Lovegrove, Daniel St Johnston

 

CXXC1 is redundant for normal DNA double-strand break formation and meiotic recombination in mouse
Hui Tian, Timothy Billings, Petko M Petkov

 

Avidity-driven polarity establishment via multivalent lipid-GTPase module interactions
Julien Meca, Aurelie Massoni-Laporte, Elodie Sartorel, Denis Martinez, Antoine Loquet, Birgit Habestein, Derek McCusker

 

Actin filaments regulate microtubule growth at the centrosome.
Manuel Thery, Daisuke Inoue, Dorian Obino, Francesca Farina, Jérémie Gaillard, Christophe Guérin, Laurent Blanchoin, Ana-Maria Lennon-Duménil

 

Myosin filaments reversibly generate large forces in cells
James Lohner, Jean-Francois Rupprecht, Junquiang Hu, Nicola Mandriota, Mayur Saxena, James Hone, Diego Pitta de Araujo, Ozgur Sahin, Jacques Prost, Michael Sheetz

 

Centrioles under electron cryo-tomography from Greenan, et al.’s preprint

 

Insights into centriole biogenesis and evolution revealed by cryoTomography of doublet and triplet centrioles.
Garrett A Greenan, Bettina Keszthelyi, Ronald D Vale, David A Agard

 

Prophase chromosome mechanics in C. elegans, from Mittasch, et al.’s preprint

 

Active gelation breaks time-reversal-symmetry of mitotic chromosome mechanics
Matthäus Mittasch, Anatol W Fritsch, Michael Nestler, Juan M Iglesias-Artola, Kaushikaram Subramanian, Heike Petzold, Mrityunjoy Kar, Axel Voigt, Moritz Kreysing

 

Live-cell imaging of marked chromosome regions reveals dynamics of mitotic chromosome resolution and compaction
John K Eykelenboom, Marek Gierlinski, Zuojun Yue, Nadia Hegarat, Hillary Pollard, Tatsuo Fukagawa, Helfrid Hochegger, Tomoyuki U Tanaka

 

Stress relaxation in epithelial monolayers is controlled by actomyosin
Nargess Khalilgharibi, Jonathan Fouchard, Nina Asadipour, Amina Yonis, Andrew Harris, Payman Mosaffa, Yasuyuki Fujita, Alexandre Kabla, Buzz Baum, Jose J Munoz, Mark Miodownik, Guillaume Charras

 

Collective cell behaviour in mechanosensing of substrate thickness
Camelia G Tusan, Yu Hin Man, Hoda Zarkoob, David A Johnson, Orestis G Andriotis, Philipp J Thurner, Shoufeng Yang, Edward A Sander, Eileen Gentleman, Bram Sengers, Nicholas Evans

 

Kif18A promotes Hec1 dephosphorylation to coordinate chromosome alignment with kinetochore microtubule attachment
Haein Kim, Jason K Stumpff

 

The RZZ complex integrates spindle checkpoint maintenance with dynamic expansion of unattached kinetochores
Jose-Antonio Rodriguez-Rodriguez, Kara L McKinley, Vitali Sikirzhytski, Jennifer Corona, John Maciejowski, Alexey Khodjakov, Iain M Cheeseman, Prasad Jallepalli

 

Checkpoint signaling abrogation after cell cycle reentry reveals that differentiated neurons are mitotic cells
Chaska Carlos Walton, Wei Zhang, Iris Patiño-Parrado, Estíbaliz Barrio-Alonso, Juan-José Garrido, José María Frade

 

A cell separation checkpoint that enforces the proper order of late cytokinetic events
Jennifer L Brace, Matthew D Doerfler, Eric L Weiss

 

Precise detection of S phase onset reveals decoupled G1/S transition events
Gavin D Grant, Katarzyna M Kedziora, Juanita C Limas, Jeremy E Purvis, Jeanette Gowen Cook

 

C. elegans collagen in various conditions from Vozdek, et al.’s preprint

 

HIR-1 Mediates Response to Hypoxia-Induced Extracellular Matrix Remodeling
Roman Vozdek, Yong Long, Dengke K. Ma

 

WDFY2 restrains matrix metalloprotease secretion and cell invasion by retention of VAMP3 in endosomal tubules
Marte Sneeggen, Nina M Pedersen, Coen Campsteijn, Ellen M Haugsten, Harald Stenmark, Kay Oliver Schink

 

Regulator of calcineurin-2 is a centriolar protein with a role in cilia length control
Nicola Stevenson, Dylan Bergen, Amadeus Xu, Emily Wyatt, Freya Henry, Janine McCaughey, Laura Vuolo, Chrissy Hammond, David Stephens

 

KCH kinesin drives nuclear transport and cytoskeletal coalescence for tip cell growth
Moe Yamada, Gohta Goshima

 

Visualizing Wnt secretion from endoplasmic reticulum to filopodia
Naushad Moti, Jia Yu, Gaelle Boncompain, Franck Perez, David M Virshup

 

Modelling

Incompressible limit of a continuum model of tissue growth with segregation for two cell populations

Alina Chertock, Pierre Degond, Sophie Hecht, Jean-Paul Vincent

 

Hematopoietic Stem Cell Dynamics are Regulated by Progenitor Demand: Lessons from a Quantitative Modeling Approach
Markus Klose, Maria Carolina Florian, Hartmut Geiger, Ingmar Glauche

 

Modelling cell-cell interfaces in Revell, et al.’s preprint

 

Force-based three-dimensional model predicts mechanical drivers of cell sorting
Christopher Revell, Raphael Blumenfeld, Kevin Chalut

 

Physics of lumen growth
Sabyasachi Dasgupta, Kapish Gupta, Yue Zhang, Virgile Viasnoff, Jacques Prost

 

Sensitivity to initial conditions in an extended activator-inhibitor model for the formation of patterns

R. Piasecki, W. Olchawa, K. Smaga

 

Elongation and shape changes in organisms with cell walls: a dialogue between experiments and models

Jean-Daniel Julien, Arezki Boudaoud

 

Threshold Response to Stochasticity in Morphogenesis

George Courcoubetis, Sammi Ali, Sergey V Nuzhdin, Paul Marjoram, Stephan Haas

 

A Monte Carlo method for in silico modeling and visualization of Waddington’s epigenetic landscape with intermediate details
Xiaomeng Zhang, Ket Hing Chong, Jie Zheng

 

Tools & resources

| Imaging etc.

Automated Segmentation of Epithelial Tissue Using Cycle-Consistent Generative Adversarial Networks
Matthias Haering, Joerg Grosshans, Fred Wolf, Stephan Eule

 

Signal-to-Noise ratio made easy: A tool to assess your confocal performance
Alexia Ferrand, Kai D Schleicher, Nikolaus Ehrenfeuchter, Wolf Heusermann, Oliver Biehlmaier

 

Sub-voxel light-sheet microscopy for high-resolution, high-throughput volumetric imaging of large biomedical specimens
Peng Fei, Jun Nie, Juhyun Lee, Yichen Ding, Shuoran Li, Hao Zhang, Masaya Hagiwara, Tingting Yu, Tatiana Segura, Chih-Ming Ho, Dan Zhu, Tzung K. Hsiai

 

Label-free assessment of pre-implantation embryo quality by the Fluorescence Lifetime Imaging Microscopy (FLIM)-phasor approach
Ning Ma, Nabora Reyes de Mochel, Paula Pham, Tae Yoo, Ken Cho, Michelle Digman

 

3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results
Alexandr A. Kalinin, Ari Allyn-Feuer, Alex Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Jeffrey R. de Wet, Gerald A. Higgins, Gen Zheng, Amy Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov

 

Deep learning achieves super-resolution in fluorescence microscopy
Hongda Wang, Yair Rivenson, Yiyin Jin, Zhensong Wei, Ronald Gao, Harun Gunaydin, Laurent Bentolila, Aydogan Ozcan

 

Degrading GFP-tagged zebrafish proteins in Daniel, et al.’s preprint

 

Conditional control of fluorescent protein degradation by an auxin-dependent nanobody
Katrin Daniel, Jaroslav Icha, Cindy Horenburg, Doris Muller, Caren Norden, Jorg Mansfeld

 

Real Time de novo Deposition of Centromeric Histone-associated Proteins Using the Auxin Inducible Degradation System
Sebastian Hoffmann, Daniele Fachinetti

 

Measurement of myofilament calcium in living cardiomyocytes using a targeted genetically encoded indicator
Paul Robinson, Alexander J Sparrow, Connor N Broyles, Kolja Sievert, Yu-Fen Chang, Frances A Brook, Xiaoyu Zhang, Hugh Watkins, Yama A Abassi, Michael A Geeves, Charles Redwood, Matthew J Daniels

 

Complementary studies of lipid membrane dynamics using iSCAT and super-resolved Fluorescence Correlation Spectroscopy
Francesco Reina, Silvia Galiani, Dilip Shrestha, Erdinc Sezgin, Gabrielle de Wit, Daniel Cole, B. Christoffer Lagerholm, Philipp Kukura, Christian Eggeling

 

Flat-field illumination for quantitative fluorescence imaging
Ian Khaw, Benjamin Croop, Jialei Tang, Anna Moehl, Ulrike Fuchs, Kyu Young Han

 

Neuronal morphology and projection analysis by multispectral tracing in densely labeled mouse brain
Douglas H Roossien, John M Webb, Benjamin V Sadis, Yan Yan, Lia Y Min, Aslan S Dizaji, Luke J Bogart, Cristina Mazuski, Robert S Huth, Johanna S Stecher, Sriakhila Akula, Jeff W Lichtman, Takao K Hensch, Erik D Herzog, Dawen Cai

 

Riboglow: a multicolor riboswitch-based platform for live cell imaging of mRNA and small non-coding RNA in mammalian cells
Esther Braselmann, Aleksandra J Wierzba, Jacob T Polaski, Mikolaj Chrominski, Zachariah Holmes, Sheng-Ting Hung, Dilara Batan, Joshua Wheeler, Roy Parker, Ralph Jimenez, Dorota Gryko, Robert T. T Batey,Amy E Palmer

 

Visualizing multiple inter-organelle contact sites using the organelle-targeted split-GFP system
Yuriko Kakimoto, Shinya Tashiro, Rieko Kojima, Yuuki Morozumi, Toshiya Endo, Yasushi Tamura

 

Piezo1 calcium flickers localize to hotspots of cellular traction forces
Kyle Ellefsen, Alice Chang, Jamison L. Nourse, Jesse R Holt, Janahan Arulmoli, Armen Mekhdjian, Lisa A Flanagan, Alexander R Dunn, Ian Parker, Medha M Pathak

 

Quantifying protein oligomerization in living cells: A systematic comparison of fluorescent proteins
Valentin Dunsing, Madlen Luckner, Boris Zühlke, Roberto Petazzi, Andreas Herrmann, Salvatore Chiantia

 

PinMol: Python application for designing molecular beacons for live cell imaging of endogenous mRNAs
Livia V. Bayer, Omar S. Omar, Diana P. Bratu, Irina E. Catrina

 

A Community-Developed Open-Source Computational Ecosystem for Big Neuro Data

Randal Burns, Eric Perlman, Alex Baden, William Gray Roncal, Ben Falk, Vikram Chandrashekhar, Forrest Collman, Sharmishtaa Seshamani, Jesse Patsolic, Kunal Lillaney, Michael Kazhdan, Robert Hider Jr., Derek Pryor, Jordan Matelsky, Timothy Gion, Priya Manavalan, Brock Wester, Mark Chevillet, Eric T. Trautman, Khaled Khairy, Eric Bridgeford, Dean M. Kleissas, Daniel J. Tward, Ailey K. Crow, Matthew A. Wright, Michael I. Miller, Stephen J Smith, R. Jacob Vogelstein, Karl Deisseroth, Joshua T. Vogelstein

 

| Genome tools

An optimized toolkit for precision base editing
Maria Paz Zafra, Emma M Schatoff, Alyna Katti, Miguel Foronda, Marco Breinig, Anabel Y Schweitzer, Amber Simon, Teng Han, Sukanya Goswami, Emma Montgomery, Jordana Thibado, Francisco J Sanchez-Rivera, Junwei Shi, Christopher R Vakoc, Scott W Lowe, Darjus F Tschaharganeh, Lukas E Dow

 

Identifying Gene Expression Programs of Cell-type Identity and Cellular Activity with Single-Cell RNA-Seq
Dylan Kotliar, Adrian Veres, M. Aurel Nagy, Shervin Tabrizi, Eran Hodis, Douglas A Melton, Pardis C Sabeti

 

t-SNE plots from Chen, et al.’s preprint

 

A rapid and robust method for single cell chromatin accessibility profiling
Xi Chen, Kedar Nath Natarajan, Sarah A Teichmann

 

Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data
Aaron Lun, Samantha Riesenfeld, Tallulah Andrews, The Phuong Dao, Tomas Gomes, participants in the 1st Human Cell Atlas Jamboree, John Marioni

 

Estimating the frequency of multiplets in single-cell RNA sequencing from cell-mixing experiments
Jesse D Bloom

 

SoupX removes ambient RNA contamination from droplet based single cell RNA sequencing data
Matthew D Young, Sam Behjati

 

High-throughput chromatin accessibility profiling at single-cell resolution
Anja Mezger, Sandy Klemm, Ishminder Mann, Kara Brower, Alain Mir, Magnolia Bostick, Andrew Farmer, Polly Fordyce, Sten Linnarsson, William Greenleaf

 

Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity
Xingqi Chen, Ulrike Litzenburger, Yuning Wei, Alicia N. Schep, Edward L. LaGory, Hani Choudhry, Amato J. Giaccia, William J. Greenleaf, Howard Chang

 

Site-specific transgenesis of the D. melanogaster Y-chromosome using CRISPR/Cas9
Anna Buchman, Omar Akbari

 

Robust single-cell DNA methylome profiling with snmC-seq2
Chongyuan Luo, Angeline Rivkin, Jingtian Zhou, Justin P Sandoval, Laurie Kurihara, Jacinta Lucero, Rosa Castanon, Joseph R Nery, Antonio Pinto-Duarte, Brian Bui, Conor Fitzpatrick, Carolyn O’Connor, Seth Ruga, Marc E Van Eden, David A Davis, Deborah C Mash, M. Margarita Behrens, Joseph R Ecker

 

JACKS: joint analysis of CRISPR/Cas9 knock-out screens
Felicity Allen, Fiona Behan, Francesco Iorio, Kosuke Yusa, Mathew Garnett, Leopold Parts

 

CRISPRCloud2: A cloud-based platform for deconvoluting CRISPR screen data
Hyun-Hwan Jeong, Seon Young Kim, Maxime W.C. Rousseaux, Huda Y. Zoghbi, Zhandong Liu

 

ovoD co-selection: a method for enriching CRISPR/Cas9-edited alleles in Drosophila
Ben Ewen-Campen, Norbert Perrimon

 

BROCKMAN: Deciphering variance in epigenomic regulators by k-mer factorization
Carl de Boer, Aviv Regev

 

Snapshot: clustering and visualizing epigenetic history during cell differentiation
Guanjue Xiang, Belinda Giardine, Lin An, Chen Sun, Cheryl Keller, Elisabeth Heuston, David Bodine, Ross Hardison, Yu Zhang

 

Machine learning based classification of cells into chronological stages using single-cell transcriptomics.
Sumeet Pal Singh, Sharan Janjuha, Samata Chaudhuri, Susanne Reinhardt, Sevina Dietz, Anne Eugster, Halil Bilgin, Selçuk Korkmaz, John E Reid, Gökmen Zararsiz, Nikolay Ninov

 

Research practice & education

Community-driven data analysis training for biology
Bérénice Batut, Saskia Hiltemann, Andrea Bagnacani, Dannon Baker, Vivek Bhardwaj, Clemens Blank, Anthony Bretaudeau, Loraine Guéguen, Martin Čech, John Chilton, Dave Clements, Olivia Doppelt-Azeroual, Anika Erxleben, Mallory Freeberg, Simon Gladman, Youri Hoogstrate, Hans-Rudolf Hotz, Torsten Houwaart, Pratik Jagtap, Delphine Lariviere, Gildas Le Corguillé, Thomas Manke, Fabien Mareuil, Fidel Ramírez, Devon Ryan, Florian Sigloch, Nicola Soranzo, Joachim Wolff, Pavankumar Videm, Markus Wolfien, Aisanjiang Wubuli, Dilmurat Yusuf, Rolf Backofen, James Taylor, Anton Nekrutenko, Björn Grüning

 

Visualization of Biomedical Data

Seán I O’Donoghue, Benedetta F Baldi2, Susan J Clark, Aaron E Darling, James M Hogan, Sandeep Kaur, Lena Maier-Hein, Davis J McCarthy, William J Moore, Esther Stenau, Jason R Swedlow, Jenny Vuong, James B Procter​

 

Scientific literature text mining and the case for Open Access

Gopal P Sarma

 

Abandon statistical inference

Valentin Amrhein​, David Trafimow, Sander Greenland

 

High impact journals in ecology cover proportionally more statistically significant findings
Silvia Ceausu, Luis Borda-de-Agua, Thomas Merckx, Esther Sossai, Manuel Sapage, Murilo Miranda, Henrique M. Pereira

 

Manipulating the alpha level cannot cure significance testing

David Trafimow, Valentin Amrhein, Corson N. Areshenkoff, Carlos Barrera-Causil, Eric J. Beh, Yusuf Bilgiç, Roser Bono, Michael T. Bradley, William M. Briggs, Héctor A. Cepeda-Freyre, Sergio E. Chaigneau, Daniel R. Ciocca, Juan Carlos Correa, Denis Cousineau, Michiel R. de Boer, Subhra Sankar Dhar, Igor Dolgov, Juana Gómez-Benito, Marian Grendar, James Grice, Martin E. Guerrero-Gimenez, Andrés Gutiérrez, Tania B. Huedo-Medina, Klaus Jaffe, Armina Janyan, Ali Karimnezhad, Fränzi Korner-Nievergelt, Koji Kosugi, Martin Lachmair, Rubén Ledesma, Roberto Limongi, Marco Tullio Liuzza, Rosaria Lombardo, Michael Marks, Gunther Meinlschmidt, Ladislas Nalborczyk, Hung T. Nguyen, Raydonal Ospina, Jose D. Perezgonzalez, Roland Pfister, Juan José Rahona, David A. Rodríguez-Medina, Xavier Romão, Susana Ruiz-Fernández, Isabel Suarez, Marion Tegethoff, Mauricio Tejo, Rens van de Schoot, Ivan Vankov, Santiago Velasco-Forero, Tonghui Wang, Yuki Yamada, Felipe C. Zoppino, Fernando Marmolejo-Ramos

 

Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal?

Christos D Arvanitidis, Richard M Warwick, Paul J Somerfield, Christina Pavloudi, Evangelos Pafilis, Anastassis Oulas, Giorgos Chatzigeorgiou, Vasilis Gerovasileiou, Theodoros Patkos, Nicolas Bailly, Francisco Hernandez, Bart Vanhoorne, Leen Vandepitte, Ward Appeltans, Robert Adlard, Peter Adriaens, Ahn Kee-Jeong, Ahyong Shane, Akkari Nesrine, Gary Anderson, Angel Martin, Claudia Arango, Tom Artois, Stephen Atkinson, Ruud Bank, Anthony D Barber, Joao P Barbosa, Ilse Bartsch, Denise Bellan-Santini, Jimmy Bernot, Annalisa Berta, Rüdiger Bieler, Magda Błażewicz, Phil Bock, Ruth Böttger-Schnack, Philippe Bouchet, Nicole Boury-Esnault, Geoff Boxshall, Christopher B Boyko, Simone Nunes Brandão, Rod Bray, Niel L Bruce, Stephen Cairns, Tania N Campinas Bezerra, Paco Cárdenas, Benny KK Chan, Tin-Yam Chan, Lanna Cheng, Morgan Churchill, Laure Corbari, Ralf Cordeiro, Astrid Cornils, Keith A Crandall, Thomas Cribb, Jean-Loup D’hondt, Meg Daly, Mikhail Daneliya, Jean-Claude Dauvin, Peter Davie, Claude De Broyer, Valentin De Mazancourt, Nicole De Voogd, Peter Decker, Danielle Defaye, Henk Dijkstra, Martin Dohrmann, Daryl Domning, Rachel Downey, Inna Drapun, Ursula Eisendle-Flöckner, Christine Ewers-Saucedo, Marien Faber, Diego Figueroa, Julian Finn, Gustavo Fonseca, Ewan Fordyce, William Foster, Hidetaka Furuya, Horia Galea, Oscar Garcia-Alvarez, Rade Garic, Rebeca Gasca, Santiago Gaviria-Melo, Sarah Gerken, David Gibson, João Gil, Arjan Gittenberger, Chris Glasby, Serge Gofas, Samuel E Gómez-Noguera, David González-Solís, Dennis Gordon, Michal Grabowski, Cinzia Gravili, José M Guerra-García, Roberto Guidetti, Katja Guilini, Kerry A Hadfield, Ed Hendrycks, Bachiller Herrera, Ju-Shey Ho, Jens Høeg, Oleksandr Holovachov, Matthew D Hooge, John Hooper, Tammy Horton, Lauren Hughes, Matús Hyžný, Luiz IF Moretti, Tohru Iseto, Viatcheslav N Ivanenko, Gerhard Jarms, Damià Jaume, Krzysztof Jazdzewski, Ivana Karanovic, Young-Hyo Kim, Rachael King, Michelle Klautau, Jürgen Kolb, Alexey Kotov, Traudl Krapp-Schickel, Antonina Kremenetskaia, Reinhardt Kristensen, Andreas Kroh, Sven Kullander, Rafael La Perna, Sara LeCroy, Daniel Leduc, Rafael Lemaitre, Anne-Nina Lörz, Jim Lowry, Enrique Macpherson, Larry Madin, Tomasz Mamos, Renata Manconi, Bruce Marshall, David J Marshall, Patrick Martin, Sandra McInnes, Jan Mees, Tõnu Meidla, Kelly Merrin, Dmitry Miljutin, Claudia Mills, Vadim Mokievsky, Tina Molodtsova, Rich Mooi, André C Morandini, Rosana Moreira Da Rocha, Fabio Moretzsohn, Jonas Mortelmans, Jeanne Mortimer, Luigi Musco, Thomas A Neubauer, Eike Neubert, Peter NG Neuhaus, Anh D Nguyen, Claus Nielsen, Jon Norenburg, Tim O’Hara, Hisayo Okahashi, Dennis Opresko, Masayuki Osawa, Yuzo Ota, Gustav Paulay, Vincent Perrier, William Perrin, Iorgu Petrescu, Bernard Picton, John F Pilger, Andrzej Pisera, Dan Polhemus, Gary Poore, James D Reimer, Hans Reip, Michael Reuscher, Pilar Rios Lopez, Marc Rius, Klaus Rützler, Alexander Rzhavsky, José Saiz-Salinas, André F Sartori, Heinrich Schatz, Bernd Schierwater, Andreas Schmidt-Rhaesa, Simon Schneider, Christine Schönberg, André R Senna, Cristiana Serejo, Shabuddin Shaik, Shokoofeh Shamsi, Jyotsna Sharma, Noa Shenkar, Andrew Shinn, Jacek Sicinski, Volker Siegel, Petra Sierwald, Elizabeth Simmons, Frederic Sinniger, Duncan Sivell, Boris Sket, Harry Smit, Nicole Smol, Jesser F Souza-Filho, Jörg Spelda, Sérgio N Stampar, Eric Stienen, Pavel Stoev, Sabine Stöhr, Malin Strand, Eduardo Suárez-Morales, Mindi Summers, Billie J Swalla, Stefano Taiti, Masaatsu Tanaka, Anne H Tandberg, Danny Tang, Mark Tasker, Harry ten Hove, Jan J ter Poorten, Jim Thomas, Erik V Thuesen, Ben Thuy, Juan T Timi, Antonio Todaro, Xavier Turon, Peter Uetz, Sergiy Utevsky, Jean Vacelet, Risto Väinölä, Sancia ET van der Meij, Ton van Haaren, Virág Venekey, Chris Vos, Genefor Walker-Smith, Chad T Walter, Les Watling, Matthew Wayland, Christopher Whipps, Gary Williams, Robin Wilson, Moriaki Yasuhara, Joana Zanol, Wolfgang Zeidler

 

Science podcasts: analysis of global production and output from 2004 to 2018
Lewis E MacKenzie

 

Changes in Acceptance of Evolution and Associated Factors during a Year of Introductory Biology: The Shifting Impacts of Biology Knowledge, Politics, Religion, Demographics, and Understandings of the Nature of Science
Ryan D.P. Dunk, Jason R. Wiles

 

Why not…

Astroplastic: A start-to-finish process for polyhydroxybutyrate production from solid human waste using genetically engineered bacteria to address the challenges for future manned Mars missions
Xingyu Chen, Syeda Ibrahim, Alina Kunitskaya, Kaitlin Schaaf, Zi Fei Wang, Preetha Gopalakrishan, Maliyat Noor, Harry Wilton-Clark, Jacob Grainger, Alex Ivanova, Patricia Lim, Michaela Olsakova, Lalit Bharadwaj, Bilal Sher, David Feehan, Rachelle Varga, Mayi Arcellana-Panlilio

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