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Forgotten classics: Making a monotreme

Posted by , on 17 October 2017

T. Thomson Flynn and J.P. Hill. 1939. The Development of the Monotrema – Part IV. Growth of the Ovarian Ovum, Maturation, Fertilisation and Early Cleavage. Transactions of the Zoological Society of London, 24, 445-623.

T. Thomson Flynn and J.P. Hill. 1947. The Development of the Monotrema – Part VI. The Later Stages of Cleavage and the Formation of the Primary Germ-layers. Transactions of the Zoological Society of London, 26, 1-151.

Recommended by Guojun Sheng, IRCMS, Kumamoto University, Japan. 


 

Mammals alive today are split into three groups: the placentals (like us), the marsupials (like Skippy), and, distantly related to the rest, the monotremes. Monotremes come in two kinds: echidnas, shambling, animated pincushions” whose young are known as ‘puggles’, and platypuses, famous for their chimeric collection of weird anatomical features (their species name, Ornithorhyncus anatinus, means ‘duck-like bird-snout’).

 

Platypuses and echidnas in John Gould’s The Mammals of Australia, which you can read over at Biodiversity Heritage Library

 

In addition to their odd appearance, monotremes stand out compared to other mammals when it comes to reproduction: rather than giving birth to live young, they lay eggs, a trait shared with birds and reptiles, which together form the sister group to mammals (mammals, birds and reptiles together form the amniotes). Given their phylogenetic position and mix of biological traits, monotremes might tell us a lot about mammalian evolution from a reptile-like ancestor, keeping in mind of course that they have not stayed still since they split from the rest of the mammals perhaps a hundred and sixty million years ago. From the perspective of developmental biology, the question is how an ancestral, reptile-like mode of embryogenesis was transformed into a mammal-like one: do monotremes develop more like other mammals, or more like birds and reptiles? (Another proviso here: ‘mammal-like’ rather obscures the diversity seen in early mammalian embryogenesis, as explored by Guojun Sheng, Marilyn RenfreeBerenika Plusa and others, but monotremes might in fact prove a useful example to understand this diversity.)

Answering these questions is not easy. Some animals are more amenable to embryological investigation than others, and monotremes are exceptionally intransigent in this regard: they can be hard to find, do not breed well in colonies (though this might be getting easier), are not really prodigious breeders in any case, and have embryos that are difficult to collect and preserve. ‘Non-model’ doesn’t quite cover it.

Nevertheless, monotreme embryology has a long history. The Scottish zoologist W.H. Caldwell was one of first Western scientists to unequivocally describe monotreme egg-laying (read more in Brian Hall’s paradoxical history of the platypus), in a famously terse telegram sent while on an expedition in Queensland in 1884 :

 

“Monotremes oviparous, ovum meroblastic”

 

‘Meroblastic’ describes the incomplete cleavage of the early embryo, which reptiles and birds do too.

 

Plate from Caldwell’s The Embryology of Monotremata and Marsupialia Part I, available at The Embryo Project

 

Caldwell’s expeditions were torrid affairs –

 

Crossing the Maclntyre River in a flood, the buggy was upset, and its contents washed away. The two following months were lost through the effects of a fever…

 

But not just for him: the Aboriginal Australians employed  by Caldwell to catch the animals were treated horrendously, according to the introduction to his paper describing the expedition (it’s quite a shocking read, but perhaps not an altogether surprising one).

As Caldwell describes, collecting monotreme samples in the wild was a difficult and often brutal business. Since a lot of embryonic development occurs in utero, to get earlier stages you have to kill the mothers. Platypuses posed particular problems, as described in a later account:

 

“…it is extremely difficult, even for residents in Australia, to procure material necessary for an investigation into the development of the egg of Ornithorhynchus….The animal itself, though pretty widely distributed, and probably still far from becoming extinct, is to be found, in any one locality, only in comparatively small numbers.

The eggs, when laid, are deposited in a burrow which it is far from easy to locate, and whose opening up involves a considerable amount of labour, since, apart from its great length, the river-bank in which it is situated is commonly enough permeated by tree-roots. And when at length the actual dwelling-chamber or nest is successfully opened up, no reward at all may be forthcoming, or the material which is obtained may be unsuitable for the immediate purpose in view.

Even when it is the intra-uterine stages of the egg which are required…the difficulties are nearly as great. The animal is extremely shy and difficult [to] approach. They are occasionally, but rarely, captured as an incident in net-fishing in the larger rivers: otherwise they are practically only obtainable with the gun. During the breeding season, however, the pregnant female appears to keep much more closely to the burrow, so that one may then commonly enough shoot five or six males to one female.”

 

This was published in 1908 by J.T Wilson and one J.P. Hill, who with T.T. Flynn wrote the two hefty monographs that are the subject of this Forgotten Classics piece – Volume IV and Volume VI of the Transactions of the Zoological Society of London’s Development of the Monotrema series.

Hill was born in Edinburgh but moved early in his career to Sydney (where he met Flynn who was studying there), before returning to the UK to University College London and rising to chair of embryology and histology. Flynn was an Australian who moved to Tasmania from Sydney to become a professor of biology and an eminent naturalist. In Tasmania, as well as collecting monotreme samples, he fathered Errol Flynn (yes that Errol Flynn, the actor), but after his funding was cut he moved to Queens University in Belfast. There he served as a fire martial and casualty clearing officer in the Second World War, for which he was awarded an MBE.

 

TT Flynn (L, source) and JP Hill (R, source)

 

The two monographs describe observations on a collection of 150 or so monotreme eggs and embryos initiated in 1896 by Hill in Queensland, and later added to by Flynn in Tasmania. The samples were preserved in the field and then sectioned, stained and analysed in the lab, often decades later (one was embedded in wax thirty years before being sectioned with a myotome; there may have been half a century between a sample’s collection and the publication of its description). Volume IV describes the making of the monotreme oocyte, its fertilisation and the early cleavage stages of the embryo. Volume VI goes from cleavage until germ layer formation.

 

A platypus egg, Plate 91 from Flynn and Hill, 1939, with permission of Wiley.

 

The monographs are methodical and descriptions of the collection – each sample is described in the most minute of details, consistent with Hill’s renown for accuracy both in sample preparation and description (“everything he does is done with the most meticulous accuracy…the exact wording of each sentence had to be discussed to make certain that it was precise, unambiguous, and made all possible reservations”, according to the introduction to a dedicated volume of the Journal of Anatomy). It can make for some daunting reading, particularly if you are unfamiliar with some of descriptive terms – one section on the oocyte features eosinophil and basal granules, pseudo-reticular strands, vitello-fatty zones, irregular sinuous folds, linin threads. But in fact much of it is written beautifully and the plates are often quite stunning.

 

 

So how do you make a monotreme? Flynn and Hill observed that many features of monotreme oocyte formation and embryogenesis look quite like their bird and reptile cousins. For instance the eggs are yolky, the germinal disc sits on top of the yolk, and early cleavages are meroblastic; early cleavage creates a cellular blastoderm that is separate from the uncleaved yolk; there is an extra-embryonic structure called a germ-ring not seen in mammalian embryos; the multi-layered blastoderm thins out into a single layered structure, and this process appears to involve migration of cells to within the embryo, which looks like reptile delamination. There are also some features that are more mammal-like, and some which seemed to Flynn and Hill to be unique to monotremes, but the key observations seem to be that these mammals share a lot of features of early embryogenesis with birds and reptiles.

As discussed by Guojun Sheng below, Flynn and Hill’s findings suggest we should do more to understand the early development of birds and reptiles, stages which have historically, and for technical reasons, been underserved. We could then move to a more complete understanding of the variations of amniote development, and hence its evolution.

The work also makes us consider the use of different models in developmental biology. There are many animals for which descriptive embryology and anatomy of the kind practised by Flynn and Hill was the only way in, and for which today perhaps only genome sequences – the platypus genome was sequenced in 2007 – can add to our understanding. When such animals are the only extant outcomes of critical evolutionary junctures, papers like Flynn and Hill’s are crucial. And, of course, we are benefiting from work that was of its time: such a collection with its collateral damage of thousands of dead monotremes simply could not have been assembled today. No one has performed a similar analysis since, so the papers really do stand alone in embryology.

But the story isn’t over, at least for echidnas: the establishment of colonies promises to provide additional opportunities to understand monotreme development, and there are even PhD positions available! For now at least, I’d like to propose a monotreme wing in William Sullivan’s Institute for the Study of Non-Model Organisms.


 

Thoughts from the field

Guojun Sheng, IRCMS, Kumamoto University, Japan

 

These two related, heavy-weight (literally) papers by the same authors (TT Flynn and JP Hill) [for biographical accounts, see http://adb.anu.edu.au/biography/hill-james-peter-6669 and http://adb.anu.edu.au/biography/flynn-theodore-thomson-6202 ] describe pre-gastrulation development of monotreme embryos. Despite the length (each over 150 pages), these two papers are easy and enjoyable to read. The clarity and quality in their writing style and data presentation can only be appreciated by reading the original papers, rather than from summaries in a handful of review papers which cited them.

What makes them essential readings for developmental biologists is their relevance to modern-day stem cell biology, the foundation of which is based on our understanding of mammalian early development. The monotremes are a group of prototherians (early-branched out mammals) which retain many developmental features of their reptilian ancestor. Our knowledge on cellular and molecular regulation of early lineage segregation (trophoblast, epiblast and hypoblast) in eutherians (placental mammals including mice and humans) would be incomplete, to say the least, without an understanding of these events from the perspective of comparative mammalian/amniote embryology. Although experimentation with monotreme embryos is impractical, similarities between monotreme and reptilian (including avian) early development make a strong case for redoubling our efforts in the investigation of pre-gastrulation development using avian/reptilian models.

Readers may be interested in two papers from our lab:

1) Research paper on chicken pre-ovipositional development (published in Development)

http://dev.biologists.org/content/142/7/1279.long

2) Review paper on comparative amniote pre-gastrulation development (published in Developmental Biology)

www.sciencedirect.com/science/article/pii/S0012160614005193


Both papers have been made free to view for three months courtesy of Wiley Publishers.

 


Aidan Maartens

This post is part of a series on forgotten classics of developmental biology. You can read the introduction to the series here and read other posts in this series here. We also would love to hear suggestions for future Forgotten Classics – let us know in the comments box.

 

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SWBioDTP BBSRC PhD studentship open to work on Marchantia plant shape determination.

Posted by , on 17 October 2017

Closing Date: 15 March 2021

Supervisors: Dr Jill Harrison and Dr Martin Homer.

Plant shapes range from tiny string or mat-like forms to massive multilayered upright forms with complex organ systems such as shoots, roots and leaves. Despite these wide differences in shape, many plant gene families are very ancient, predating shape diversification. We can therefore study mechanisms for shape determination in simple plants such as liverworts, and use the knowledge gained to understand plant shape determination in general.

To this end, we previously used a combination of live imaging, statistical model fitting, computational modelling and molecular biology to discover mechanisms regulating shape in the liverwort Marchantia polymorpha (Solly et al. (2017): Current Biology).

We found that Marchantia undergoes a stereotypical sequence of shape transitions during development. The overall shape depends on regional growth rate differences that are specified by the growing apical notches. Computational modelling showed that a diffusible, growth-promoting cue produced in the notches is likely to pattern these regional growth rate differences, and pharmacological experiments suggested that the plant hormone auxin equates to this growth-promoting cue.

New models suggest a role for differential oriented growth (anisotropy) in Marchantia shape determination. Anisotropy emerges as an outcome of underlying tissue polarities, and directional auxin transport may have a role.

Your project will build on the work above to determine how auxin contributes to plant shape determination in Marchantia.

Training:

By combining computational and wet lab approaches, your project work will provide training at the cutting edge of the plant evolution and development fields. You will benefit from further formal teaching and internships included in the SWBioDTP programme. The skills and techniques you learn will be broadly applicable in the academic biology and biotech sectors and widely transferable amongst areas such as science policy, publishing and computing.

Reading:

Harrison (2017). Development and genetics in the evolution of plant body plans. Philosophical Transactions of the Royal Society B 372: 20150490.

Hong and Roeder (2017). Plant development: differential growth rates in distinct zones shape and ancient plant form. Current Biology 27: R19-21.

Solly et al. (2017). Regional growth rate differences specified by apical notch activities regulate liverwort thallus shape. Current Biology 27: 16-26.

Whitewoods and Coen (2017). Growth and development of three-dimensional plant form. Current Biology 27: R910-918.

Further information:

The deadline for applications is 4th December 2017. Please contact Dr Jill Harrison (jill.harrison@bristol.ac.uk) for informal discussions about the project. Further information about project supervisors’ work can be found on Jill Harrison and Martin Homers’ home pages. Further information about the SWBioDTP and application procedures is listed on the SWBioDTP web pages.

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BBSRC EASTBIO-funded PhD: Control of the ParaHox genes in chordate evolution and development

Posted by , on 17 October 2017

Closing Date: 15 March 2021

Supervisors: Dr David Ferrier (University of St Andrews) and Prof Kate Storey (University of Dundee)

 

This project will dissect the regulatory mechanisms of the chordate ParaHox genes (Gsx, Xlox/Pdx1 and Cdx), analysing regulatory elements of these genes in both the invertebrate sea squirt Ciona intestinalis and the vertebrate Gallus gallus (chicken). ParaHox genes are the evolutionary sisters to the Hox genes, and like their sisters are important components of axial patterning, mainly in the central nervous system and gut. They also tend to have a clustered organisation in the genome that is likely linked to how the genes are regulated. Mis-regulation of ParaHox genes can cause diseases such as diabetes and colon cancer, and changes to the Hox/ParaHox genes are important agents in the evolution of animal form.

 

In this project, we will capitalize on the power of the comparative approach to deduce underlying fundamental aspects of body axis patterning by regulation of the ParaHox genes.

 

The student will obtain training in cutting-edge techniques in molecular biology, embryology, bioimaging and bioinformatics and be part of the enthusiastic and vibrant research communities in the Universities of St Andrews and Dundee, benefitting from the complementary strengths, strong links and close proximity of these institutions.

 

Funding Notes

 

Applications for BBSRC EASTBIO studentships are invited from excellent UK students (and EU citizens if they meet UK Research Council residency criteria) with at least a BSc (Hons) 2.1 undergraduate degree.

 

More information.

 

e-mail: dekf@st-andrews.ac.uk

 

https://www.findaphd.com/search/ProjectDetails.aspx?PJID=90025&LID=1443

 

How to apply?

 

https://synergy.st-andrews.ac.uk/research/phd-study/

 

Application deadline: 4th December 2017.

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In Development this week (Vol. 144, Issue 20)

Posted by , on 17 October 2017

Here are the highlights from the current issue of Development:

 

Sequencing sheds light on human spermatogenesis

In order to produce sperm, progenitor germ cells in the testes must undergo mitosis, meiosis, differentiation, and alter their chromatin structure to give rise to functional gametes. Much of our knowledge about how this complex process is controlled in humans is extrapolated from studies performed on mice, despite the fact that spermatogenesis may differ between species. On p. 3659, Sjoerd Repping and colleagues combine laser-capture microdissection and next-generation RNA sequencing techniques to provide the first detailed analysis of the gene expression patterns of spermatogenic cells isolated from human tissue. They profile the transcriptomes of six functionally distinct classes of germ cells from the human testis, which represent successive steps in the process of spermatogenesis. They find that over 4000 genes are dynamically transcribed throughout this process, including a significant number of post-transcriptional regulators such as RNA-binding proteins and long non-coding RNAs. These data suggest that post-transcriptional regulatory mechanisms are important for the transition of germ cells from a precursor state into differentiated sperm. This work provides valuable insight into how the process of sperm production differs between humans and other species at a transcriptional level, and should serve as an important resource for identifying genes implicated in male infertility.

miR-290: the making of placental mammals?

MicroRNAs play a variety of roles during development, primarily by regulating gene expression through repression of target mRNAs. One cluster, the miR-290 cluster, is specific to placental mammals, and has, in the past, been linked to pluripotency maintenance in the early mammalian embryo. On p. 3731, Robert Blelloch and colleagues now uncover a role for the miR-290 cluster in placental development. Using transgenic mouse lines, they find that the miR-290 cluster is highly expressed during early mouse embryogenesis and becomes restricted to the trophoblast from gastrulation up until birth. When the miR-290 cluster is deleted, mRNAs targeted by this cluster become dysregulated. Interestingly, this deletion also causes several placental defects, including a reduction in trophoblast proliferation, reduced giant cell endoreduplication, and disruption of the vasculature of the placental labyrinth. Ultimately, this results in the development of a placenta that is reduced in size, and defective in passive diffusion of nutrients from the mother to the foetus, leading to late embryonic lethality. These results suggest that microRNAs within the miR-290 cluster are responsible for regulating the gene network important for placental growth and development in mice, and may provide insight into the evolution of eutherian mammals.

 

Semaphorin marks the spot in the pancreas

Islets are clusters of endocrine cells in the pancreas that contain specialised cell types responsible for the secretion of hormones such as insulin and glucagon. During the development of the pancreas, progenitors of islet cells delaminate from the embryonic ductal epithelium then migrate before maturation, so that the endocrine cell clusters become scattered throughout the pancreatic tissue. On p. 3744, Seung K. Kim and colleagues now uncover a mechanism controlling the migration of these cells and the subsequent positioning of islets. Using transgenic mouse lines and protein-soaked beads, they identify the semaphorin ligand Sema3a as a long-range guidance signal for migrating foetal islet cells. They show that endocrine cells express high levels of the Sema3a receptor neuropilin 2, allowing them to sense and transduce this chemoattractant. Intriguingly, this mechanism is similar to that which controls neuronal migration in the developing brain, and thus uncovers a conserved mechanism for directing the migration of progenitor cells during organogenesis.

 

Decisions, decisions: cell fate choice in the early mammalian embryo

During the first week of mammalian development, the cells of the early embryo undertake two sequential cell fate decisions and segregate into the three lineages that make up the blastocyst. First, the trophectoderm (the precursor tissue to the placenta) becomes specified, occupying the outside of the embryo and surrounding uncommitted inner cell mass (ICM) cells. These subsequently segregate to Nanog-expressing epiblast (EPI; the embryo proper) and Gata6-expressing primitive endoderm (PE; yolk sac precursors).

In this issue, two research articles, one from the Ema lab and the second a collaboration between the Plusa and Piliszek labs, delve deeper into what governs the crucial EPI/PE cell fate specification event, which is well known to be reliant on FGF/ERK signalling. On p. 3706, Masatsugu Ema and colleagues provide evidence that the transcription factor Klf5 lies upstream of FGF/ERK signalling. They find that Fgf4 is upregulated in Klf5-knockout mouse embryos, which fail to specify EPI and can only generate PE. Conversely, when Klf5 is overexpressed, ICM cells fail to segregate, and continue to co-express both Nanog and Gata6. Furthermore, they find that Klf5 binds to the Fgf4 locus, suggesting that Fgf4 expression can be directly regulated by this transcription factor.

In the second study (p. 3719), Anna Piliszek et al. use a different model system – the rabbit – to investigate lineage specification in early embryos. Unlike the mouse embryo, they detect co-expression of NANOG and GATA6 in late blastocysts, suggesting that mutual co-repression does not function in the initiation of lineage specification in rabbit. Furthermore, they show that inhibition of FGF signalling is not sufficient to expand the population of EPI cells, and although the population of PE cells is reduced, GATA6 expression is unaffected. These results indicate that although the key transcription factors are conserved in early mammalian embryogenesis, the way they function, and the way they interact with signalling pathways, may differ between species.

Taken together, these data add to our understanding of how the earliest cell fate decisions are taken in the mammalian embryo, and how they vary across evolution.

 

Plus…

Mitotic bookmarking in development and stem cells

This Primer provides an overview of mitotic bookmarking processes in development and stem cells, highlighting how bookmarking factors can regulate cell identity and contribute to phenotypic flexibility and plasticity during development.

 

The three-dimensional genome

This Review summarizes the role of 3D chromatin architecture in organizing the regulatory genome and evaluates how its misfolding can lead to gene misexpression and disease.

 

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Postdoctoral positions to perform in vivo neural imaging at Northeastern University

Posted by , on 17 October 2017

Closing Date: 15 March 2021

We are accepting candidates for a postdoctoral research associate in our multidisciplinary research group. The Clark group at Northeastern University detects ions (Na, K, Ca, etc.) and small molecules (glucose, acetylcholine, etc.) as well as proteins, and we are working with the Monaghan group in Biology to detect chemicals in vivo.  In particular, we are seeking to fill two positions on a project to image acetylcholine release in the peripheral nervous system. The successful candidate would be highly motivated and have a strong background in fluorescence imaging, particularly in vivo.

 

For more details, please follow the link:

http://neu.peopleadmin.com/postings/51277

 

 

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Open positions for PhD projects in Translational Psychiatry and the @ImprsTp Residency/PhD program

Posted by , on 16 October 2017

Closing Date: 15 March 2021

The International Max Planck Research School for Translational Psychiatry (IMPRS-TP) is offering PhD positions in molecular, cellular and systemic psychiatric research. Students are exposed to a wide range of scientific questions and methods covering areas of molecular medicine, neuroscience, psychiatry, quantitative epigenetics and imaging, neuroimaging, design-based stereology and clinical studies.

Research in a translational setting 

In addition to the traditional doctorate positions, trainee medical doctors are given the opportunity to be enrolled on an integrated PhD/residence program in psychiatry. Highlighting the translational facet, doctorate students will receive insights into clinical aspects of disease and trainee medical doctors will gain PhD level research expertise, while also developing their clinical skills.

Receive exceptional training for a successful career in research, clinic and academia! 

Structured curriculum: Core Course | Lecture Series | Methods Workshops | Soft Skills

Topics addressed range from molecular and cellular neuroscience, behavioral assessments, electrophysiology and brain imaging to psychological and clinical measures and outcomes, as well as, epidemiology, statistics and bioinformatics.

Work in an environment of scientific excellence and interdisciplinary collaboration 

IMPRS-TP is a joint initiative of leading scientists from the Max Planck Institutes of Psychiatry and of Neurobiology and the Ludwig Maximilians University, Munich. Further collaborations have been established with the Munich Medical Research School (MMRS), the Helmholtz Center Munich, the Graduate School of Systemic Neurosciences (GSN), Martinsried, Germany and King’s College London, UK. IMPRS-TP is co-funded by the Else-Kröner-Fresenius Foundation.

Call for applications 

IMPRS-TP welcomes applications from doctoral candidates coming from any country who hold a 4 year Bachelor or Master of Science (or an equivalent degree) in a relevant field or a Medical Degree. Applications from trainee medical doctors with laboratory experience are particularly encouraged. IMPRS-TP will only accept applications submitted through the IMPRS-TP online application tool. Applications submitted by mail or email will not be considered. Application deadline is January 2nd, 2018.

For more information, visit http://www.imprs-tp.mpg.de/ 

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Adhesion and signaling by Collagen IV intercellular concentrations (CIVICs)

Posted by , on 16 October 2017

The Great Wall of Collagen IV
During the long history of evolution, the key innovation that gave rise to animals with true tissues was the extracellular matrix, very conserved from sponges to humans [1]. Before I started my PhD in the lab of Jose C. Pastor-Pareja at Tsinghua University in Beijing, he had described how the matrix protein Collagen IV is secreted and deposited into the matrix basement membranes (BMs) of the Drosophila fruit fly larva for shaping tissues and organs [2]. This research attracted my attention since I felt I’d like to understand the process and functional significance of extracellular matrices in building tissues. In my mind, extracellular matrices such as the BM were like the Great Wall (Figure 1), shaping, delimiting and defining tissues while keeping them from invasive damage.

 

Figure 1. Lab outing at the Great Wall. People involved in the CIVICs work were myself (戴建莉; 1), Mengqi Ma (马梦绮; 2), Zhi Feng (冯智; 3) and Jose (何赛; 4). The inset shows a typical basement membrane (BM) in the Drosophila wing imaginal disc.

 

Basement membranes are specialized planar matrices underlying epithelial and endothelial tissues, and surrounding nerves, muscles and adipocytes [3,4]. Collagen IV, thought to be an exclusive BM component, is a heterotrimer made of three alpha chains. These trimers can interact with each other to form a higher order scaffold. Despite a lot of research into extracellular matrices and a great deal of biochemical characterization, there are still many mysteries for developmental and cell biologists to solve. For instance, the hierarchy of assembly of BM components in vivo, why basement membranes are continuous planar layers rather than more amorphous structures or how matrices maintain the diverse organization of tissues and impact their physiology. In both flies and humans, adipose cells, called fat body cells in Drosophila,n IV, tissue morphog are cells of mesodermal origin lacking epithelial structure and yet they form true compact tissues. Our recent paper published in Current Biology shows how Collagen IV-containing structures different from BMs hold adipocytes together.

 

How it all started

One of the most wonderful tools we have in flies is protein traps, allowing visualization of endogenous proteins tagged with GFP. With the help of a Collagen IV functional GFP trap, we are able to visualize BMs very easily at great resolution. Collagen IV is widely regarded as an exclusive component of the planar BMs, not present in other more disordered types of matrices. However, images of the fat body, a favorite subject of study in our lab, always showed intercellular accumulations of Collagen IV that did not look as thin or continuous as BMs (Figure 2). We decided to call these novel structures CIVICs, which is short for Collagen IV Intercellular Concentrations. We then confirmed through electron microscopy that CIVICs were discontinuous, irregularly shaped and much thicker than BMs, for instance the one surrounding the fat body itself. Jose is a big fan of electron microscopy and always encourages us to include it in our projects. This is despite the fact that electron microscopy is a challenging and time-consuming technique, especially with fat body cells, which are difficult to handle because they are full of lipid droplets.

 

Figure 2. (A) A 3D confocal reconstruction of the larval fat body showing Collagen IV intercellular concentrations (CIVICs) in green. (B) Transmission electron micrographs of a typical basement membrane and a CIVIC (B’).

 

Adhesion and signaling by CIVICs

Finding these novel Collagen IV structures that looked so different from a BM in wild type flies was very exciting. The important question, though, was whether they were an accident, like fibrotic aggregates our lab had previously found [5], or they had an actual role. Knock down of Collagen IV created gaps between adipocytes in the normally continuous tissue layer, indicating that CIVICs were gluing cells together (Figure 3). At that point, we realized we had something truly interesting in our hands. Soon afterwards, we had the data showing that integrins and syndecan, another extracellular matrix receptor, were involved in the formation of CIVICs and in holding adipocytes together. This we highly anticipated, at least for integrins. However, it was a bit surprising to see that other BM components localized to CIVICs but did not have the same kind of effects as Collagen IV, especially for Laminin, which most people would place first in the hierarchy of assembly of the BM polymer. This is definitely an issue for further research for us.

 

Figure 3. Loss of CIVICs causes defects on inter-adipocyte adhesion. Gaps are observed in the normally continuous tissue layer.

 

So far, we had the evidence showing CIVICs contributed to intercellular adhesion and therefore maintenance of tissue organization. The final question to address clearly was the functional consequences of this organization. Something we had noticed in our experiments knocking down Collagen IV, integrins or Syndecan was that the fat body cells did not become as large as the wild type. They did not seem to be undergoing anoikis or other kind of apoptosis, but they did not look entirely happy to us. Because others in the lab were working on vesicle trafficking in these cells, we had the tools for checking lysosome and autophagosome formation. Indeed, we saw that eliminating CIVICs triggered autophagy in these cells, which is something they normally will do if unhappy, for instance under conditions of starvation. Further experiments led us to connect CIVICs to the known PI3K/Akt anti-autophagy pathway through Src, explaining how CIVICs prevented these cells from undergoing autophagy (Figure 4). In summary, these peculiar Collagen IV intercellular structures were important for both maintenance of adipose tissue structure and physiology.

 

Figure 4. Signaling from CIVICs prevents autophagy through a Src-PI3K-Akt pathway. Autophagy caused by β integrin (mys) knock down is suppressed by Src overexpression.

 

Reviewer concerns:

We appreciated that reviewers gave us many useful suggestions about quantifying our results and conducting appropriate statistical analysis. It was a lot of work, but we have to agree the paper is now more rigorous. Among other referees, concerns, the most difficult item to do was immune staining for electron microscopy, to prove that the structures we were characterizing actually contained Collagen IV. Since fat body cells are full of lipid droplets, they are very easy to break during the multiple fixation, permeabilization, staining and dehydration steps. I failed many times with immuno-gold staining. Others in the lab have been using APEX fusions for EM localization with amazingly good results, but there wasn’t enough time for us to create a Collagen IV-APEX transgenic line. Just at the moment I almost want to give up, I got the images with clear staining using HRP-coupled secondary antibodies and DAB reaction (Figure 5).

 

Figure 5. (A) Electron micrograph of fat body showing HRP staining against Collagen IV in BM and CIVICs. (B) Higher magnification images of CIVICs.

 

Final thoughts

We think our work opens new doors in the extracellular matrix and BM field, showing that the Collagen IV=BM equivalence may not be as strict as previously thought. It actually adds to work by others showing that Collagen IV-containing structures may not be all flat and homogeneously thin, blurring distinctions between BMs and more amorphous matrices [6,7]. We would definitely love to know whether structures similar to CIVICs can be seen in other Drosophila tissues or in mammals. Another distinction that is blurred by our work is that between adhesion proteins and matrix, as one could argue that Collagen IV at CIVICs is working as an intercellular adhesion molecule [8].

Finally, it is worth pointing out that the Great Wall and other defensive walls in history were, unlike The Wall in Game of Thrones, discontinuous systems of smaller walls. Actually, and despite their intended purpose, they were quite porous and ended up facilitating contacts between the peoples on both sides, enhancing commerce and cultural exchanges across them. In that sense, the Great Wall metaphor for how a system of CIVICs maintains adipocytes connected may still work.

 

This post is a comment on the paper: Dai, J., Ma, Mengqi., Feng, Zhi, and Pastor-Pareja, José (2017). Inter-adipocyte Adhesion and Signaling by Collagen IV Intercellular Concentrations in Drosophila. Current Biology. 18, 2729-2740.

 

References

  1.  Hynes, R.O., and Naba, A. (2012). Overview of the matrisome-an inventory of extracellular matrix constituents and functions. Cold Spring Harb. Perspect. Biol. 4, a004903.
  2.  Pastor-Pareja, J.C., and Xu, T. (2011). Shaping cells and organs in Drosophila by opposing roles of fat body-secreted Collagen IV and Perlecan. Dev. Cell 21, 245–256.
  3.  Yurchenco, P.D. (2011). Basement membranes: cell scaffoldings and signaling platforms. Cold Spring Harb. Perspect. Biol. 3, a004911.
  4.  Jayadev, R, and Sherwood, D.R. (2017) Morphogenesis: Shaping Tissues through Extracellular Force GradientsCurr. Biol. 17, 850-852.
  5.  Zang, Y., Wan, M., Liu, M., Ke, H., Ma, S., Liu, L.P., Ni, J.Q., Pastor-Pareja, J.C. (2015). Plasma membrane overgrowth causes fibrotic collagen accumulation and immune activation in Drosophila adipocytes. eLife 10.7554/eLife.07187.
  6.  Medioni, C., and Noselli, S. (2005). Dynamics of the basement membrane in invasive epithelial clusters in Drosophila. Development 132, 3069-3077
  7.  Isabella, A.J., and Horne-Badovinac, S. (2016). Rab10-Mediated Secretion Synergizes with Tissue Movement to Build a Polarized Basement Membrane Architecture for Organ Morphogenesis. Dev. Cell 38, 47-60.
  8.  Zajac, A.L., Horne-Badovinac, S. (2017). Tissue Structure: A CIVICs Lesson for Adipocytes. Curr Biol. 27(18)1013-1015.
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Categories: Lab Life, Research

Doctoral Positions available at the Graduate School Life Science Munich

Posted by , on 16 October 2017

Closing Date: 15 March 2021

The Graduate School Life Science Munich (LSM) offers an international doctoral programme to motivated and academically qualified next generation researchers at one of Europe’s top Universities. With over 40 research groups from the Faculty of Biology and the Faculty of Chemistry and Pharmacy of Ludwig Maximilian University (LMU) München, the LSM in its prominent location within the HighTechCampus in Martinsried south of Munich, contributes to the enormous possibilities for support, interdisciplinarity and constant scientific input from the surrounding laboratories. LSM members are internationally recognized for their innovative research approaches and technologies, they are aiming to answer essential questions relevant to basic and applied biological and biochemical research. Within their own research group or in collaboration with a specialized research group on campus, LSM doctorates are given many opportunities to learn and command a variety of techniques. Furthermore, the graduate programme holds various workshops and seminars that strengthen and prepare doctorates for a successful career as scientists, as well as for non-academic routes. All courses, lectures and seminars at the LSM are held in English. Thus, selected candidates have to be fluent in both written and spoken English.
Successful students of the graduate school will be awarded a doctoral degree (Dr. rer. nat.) by the LMU after 3 to 4 years. Candidates need to prove a strong qualitative background as well as interest and ability to conduct independent research.

The doctoral programme is open for students who hold either a master´s or diploma degree, as well as to exceptional candidates with a four years bachelor degree (with written thesis).

LSM calls for doctoral candidates! Available research projects cover areas from Biochemistry, Cell and Developmental Biology, Climate Change, Ecology, Evolutionary Biology, Genetics, Microbiology, Pharmacology, and Plant Sciences. Applicants are selected in a multi-step process through our online portal, currently open until November 29th, 2017, thus ensuring openness and fairness throughout the application procedure. Every complete submission is processed and evaluated by the LSM coordinator. These are then independently reviewed by several faculty members of the LSM Graduate School. Based on academic qualification, research experience, motivation, scientific background and the letters of recommendation, candidates will be selected to participate in the LSM Interview week. After thorough evaluation through the LSM committee members, successful candidates will be invited to join the LSM Graduate School.

Further information and details about the online application process and the available research projects can be found here: http://www.lsm.bio.lmu.de/application/index.html

View link for poster: 2170612_LSM_Plakat_A3_2017_lay5

Contact information:

Graduate School Life Science Munich

Francisca Rosa Mende

Ludwig-Maximilians-University Munich

Faculty of Biology

Grosshadernerstr.

82152 Planegg-Martinsried

Germany

Tel: +49 (0) 89 / 2180-74765

E-Mail: info.lsm@bio.lmu.de

Website: http://www.lsm.bio.lmu.de

 

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Categories: Jobs

Switch the career after PhD

Posted by , on 16 October 2017

Dear Colleagues,

I am PhD graduate in Biotechnology focusing on Insect Molecular Biology and Plant Virology. After completion of my PhD in Agriculture sector, I would like to switch my career to medical sciences or advance biotech tools like studies in stem cells, or CRISPR.

Should I repeat PhD in medical sciences or is there a possibility to get job or postdoc in the health sector with the same qualification?

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Categories: Careers, Discussion, Education, Lab Life, Research

Postdoctoral Fellow Positions in Don Fox’s lab at Duke

Posted by , on 13 October 2017

Closing Date: 15 March 2021

postdoc ad

 

We use cell biology, genetics, and genomics to study how changes in chromosome number or codon usage impact organ development, repair, and disease.

more at: www.foxlabduke.com

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Categories: Jobs