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In Development this Week (Vol. 144, Issue 15)

Posted by , on 1 August 2017

Here are the highlights from the current issue of Development:

 

X-citing insights into dosage compensation

The non-coding RNA Xist plays a key role in the process of X chromosome inactivation (XCI) and is thus essential for dosage compensation of X-linked genes in females. The 5′ region of Xist RNA contains a conserved element termed the A-repeat that is required for the silencing function of Xist in embryonic stem cells, but how this region functions during development is unclear. Now, Takashi Sado and co-workers explore this by introducing into mice a mutated Xist allele that produces Xist RNA lacking the A-repeat region (p. 2784). They first report that imprinted XCI is compromised upon paternal transmission of this allele. The authors further show that the mutant form of Xist is able to coat the X chromosome but fails to silence it in embryonic and extraembryonic tissues. Surprisingly, however, mutant Xist RNA is still able to silence a subset of genes in the trophoblast. Finally, the authors reveal that the failure of imprinted XCI has a more significant impact on genome-wide gene expression than expected; changes in the expression of both X-linked and autosomal genes are observed. Together these findings provide new insights into Xist-mediated gene silencing but also raise the intriguing possibility that dosage compensation regulates X-linked genes as well as gene expression more globally.

 

Non-neural roles for acetylcholinesterase

Acetylcholinesterase (AChE) is a highly conserved protein that is known for its essential role in degrading the neurotransmitter acetylcholine at neural synapses. However, it is expressed more broadly, outside the nervous system, suggesting that it may carry out additional functions. Now, on p. 2764, Nanette Nascone-Yoder and colleagues reveal that AChE plays an essential non-classical role in Xenopus gut morphogenesis. By exposing tailbud stage Xenopus embryos to AChE inhibitors, or by injecting embryos with morpholinos to knock down AChE in the intestinal endoderm, they show that AChE is required for proper intestinal morphogenesis; in the absence of AChE function, intestines are short/malrotated and exhibit a disorganised epithelium. This function of AChE , they report, is independent of its cholinesterase activity. Further analyses demonstrate that AChE is required for endoderm cell rearrangement and polarisation – events that drive gut lengthening and morphogenesis – as well as endoderm cell differentiation. Finally, the researchers demonstrate that AChE regulates cell-substrate but not cell-cell adhesion. Overall, these results provide direct in vivo evidence for a morphogenetic function for AChE in non-neuronal tissues and suggest that AChE may function in other aspects of development and physiology, a find that has important implications given the widespread use of cholinesterase inhibitors in the treatment of human diseases.

 

A chemical reset for pluripotency

Pluripotency in mammalian stem cells is thought to pass through two phases – an initial naïve phase and a later primed phase, mimicked in vitro by mouse embryonic stem cells and human pluripotent stem cells (hPSCs), respectively. Much effort has gone into converting hPSCs to a more naïve state, but current methods are not always reliable or broadly applicable across cell lines. On p. 2748, Ge Guo, Austin Smith and colleagues provide a simple and efficient method for resetting human pluripotency based on transient inhibition of histone deacetylases (HDACs) with chemical inhibitors. HDAC inhibition leads to increased expression of naïve markers in a variety of different hPSC lines, and cells can be expanded in naïve culture conditions without requiring feeders. Chemically reset cells show a marked transcriptional difference to primed hPSCs and a similarity to epiblast cells of the preimplantation inner cell mass. Reset cells undergo global reduction in DNA methylation, have two active X chromosomes, and can differentiate into multiple lineages. This work provides a protocol for efficient resetting of hPSC pluripotency, and a transcription and methylation resource for further interrogation of the human naïve state.

 

Morphogen signalling: Dpp gets Irked

Mutations in genes encoding ion channels cause severe defects in development across species but the underlying mechanisms, particularly in tissues other than neurons and muscle, have remained unclear. On p. 2771, Emily Anne Bates and colleagues describe a role for Irk2, an inwardly rectifying potassium channel in Drosophilaorthologous to Kir2.1 in vertebrates, in regulating the release of the BMP family morphogen Dpp during development of the wing epithelium. Building on their previous finding that a dominant-negative Irk2 reduces Dpp signalling and causes wing defects, they now show that human KIR2.1 can substitute for inhibited DrosophilaIrk2, and that Irk2’s role is restricted to the cells that produce, rather than just transduce, the Dpp signal. Surprisingly, inhibiting Irk2 broadens the distribution of Dpp in the wing, but also alters the dynamics of Dpp release from cells, suggesting that Irk2 controls the timing of Dpp secretion. Irk2 inhibition reduces the amplitude of calcium spikes in wing cells, and depolarising the membrane with extracellular potassium leads to an overall increased release of Dpp, implicating Irk2’s regulation of membrane potential in Dpp release. Together, these results suggest that ion channels influence tissue morphogenesis by regulating the release of morphogens from the membrane.

 

PLUS…

Editorial changes

Development announces changes to the editorial team and invites community input in choosing a new Editor in Chief and in suggesting future areas for the journal to explore

 

An interview with Jim Smith

Jim Smith, recently knighted for services to medical research and science education, talks about his research career and his hopes for the future of biomedical science.

 

The Zahn drawings

New, freely available illustrations of developing Xenopus laevis, drawn by Natalya Zahn, provide a resource for teaching and research, especially in the field of craniofacial biology.

 

Programming and reprogramming the brain: a meeting of minds in neural fate

This Meeting Review discusses recent progress in our understanding of neuronal programming, highlighting some of the common features of cell fate determination during development and directed reprogramming.

 

KRAB zinc finger proteins

This Primer summarises our current understanding of the intriguing family of KRAB-ZFP transcriptional regulators and its contribution to the control, evolution and co-option of transposable elements.

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Postdoc in gene delivery at King’s College

Posted by , on 1 August 2017

Closing Date: 15 March 2021

We are seeking a highly motivated and talented postdoctoral researcher initially for 1 year, starting 1 October 2017, to develop nanomaterial-based gene delivery strategies for the topical treatment of genetic skin conditions. We are looking for someone with experience in gene transfer and cell biology. Further experience with optical microscopy and drug delivery would be advantageous.

 

Listing closes on Aug 13.

The official ad is here. http://bit.ly/2uQARwS

 

If you’re interested get in touch with ciro.chiappini@kcl.ac.uk

 

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January 2018: Summer! Beach! New friends and Top Developmental Biologists in course in Chile

Posted by , on 31 July 2017

New fellowships from SDB for students from USA and Canada to attend the International Course on Developmental Biology on January 9-21, 2018 in Quintay Chile. Fellowship for Latin American students will be available as well.

Nipam Patel, Alejandro Sanchez-Alvarado, Ray Keller, Claudio Stern, Corinne Huart, Maria Leptin, Andrea Streit, among other will teach, hands-on, the paradigms, problems and technologies of modern Developmental Biology.
More Information here:

DEADLINE 31st August 2017
For the student opinion’s about previous version of the course:
2014
2012

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Post Doctoral / Research Associate Position in Developmental Genomics

Posted by , on 28 July 2017

Closing Date: 15 March 2021

Post doctoral and/or Research Associate position available to study the genetic and epigenetic control of stem cell attributes and pluripotency, focusing on the neural crest gene regulatory network (NC-GRN). Neural crest cells are stem cell-like progenitors that migrate extensively and whose genesis was central to the evolution of vertebrates. Misregulation of components of the NC-GRN underlies numerous human diseases and congenital disorders.

Candidates should have a background in bioinformatics and/or computational biology, strong analytical skills, and significant experience in the analysis of NGS data (ChIP-seq, RNA-seq, ATACseq etc) and proficiency in programming languages (R, Python, PERL  etc). Projects may also involve quantitative image analysis. Candidates should be highly motivated, detail oriented, possess excellent communication skills and the ability to work collaboratively as part of an interdisciplinary team. The LaBonne lab is located on Northwestern University’s beautiful lakeside campus close to the amazing city of Chicago.

Please send a CV, brief description of research interests, and the names of three references to:

Carole LaBonne, PhD (clabonne@northwestern.edu)
Department of Molecular Biosciences
Northwestern University, Evanston, IL 602028

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Stem cell-a-palooza 2017

Posted by , on 27 July 2017

*My interview with George Daley has now been published in Development*


 

Last month I went to Boston for the Annual Meeting of the International Society for Stem Cell Research (ISSCR), which was celebrating its 15th birthday. Sally Temple handed over the Presidential reins to Hans Clevers with a reminder of what a remarkable 15 years it had been for the field – induced pluripotent cells (iPSCs), an explosion of differentiation protocols, the arrival of organoids, CRISPR and single cell sequencing, new windows onto human development, clinical trials and drug screening. She encouraged the audience to think “This is our century” – that is, the century of harnessing the power of stem cells in tackling disease. She also reiterated the ISSCR’s commitment to keep basic science at the core of what it does (you can hear more of her thoughts on the ISSCR in Caroline Hendry’s video interview for Development). In fact the whole meeting (or at least what I got out of it) was a healthy mix of basic and applied, from model organisms to drug trials, and developmental biology was repeatedly heralded as a vital foundation for any future clinical advance; my worries about wandering into a wall-to-wall differentiation protocol fest turned out to be unfounded.

So here’s my belated diary of highlights and impressions from the meeting. There were a thousand talks and posters so of course I missed a lot: if you went and want to write something about the meeting, just register and you’re free to post. Also check out the highlights from Agnes SoosCátia Bandeiras and RegenMedNet.

 

 

Tuesday, 13th June

Over the Atlantic the in-flight pasta meal tasted like it was cooked in popcorn butter. In Boston it was sweltering until out of nowhere a storm cooled the air down, and in the evening I went to a basement bar where Twitter had assembled a dozen strangers going to the meeting to meet in real life (a ‘Tweet Up’). For someone who knew hardly anyone at the meeting, it was a great way to meet new people and something I’ll try to do again (thanks to Samantha Yammine for instigating this!). After some local IPAs packed with enough hops to blow your head off, I stopped in at a Wallgreen’s on my way back to the hotel and had one of the more depressing late night dinners of my life: Salsitas followed by a flapjack.

 

Wednesday, 14th June

In the morning I went to a focus session on the ethics of organoids, which was chaired by Megan Munsie (more on Megan’s work below) and paired scientists with ethicists to discuss the impact and meaning of this new technology on wider society.

On the scientific side of things, Hans Clevers gave us the latest update on how organoids derived from adult (often patient) stem cells were helping to understand various pathologies and inform treatments. In an almost throwaway comment he told us that he could make lung organoids from patients’ sputum, and kidney organoids from their urine; you just need to spin the cells down and start the protocol. It struck me as one of those ‘living in the future’ moments. Melissa Little reminded us how critical an understanding normal development is for organoid derivation – you need a guide for which factors to add and in which order, something echoed for iPSC differentiation later in the meeting by George Daley. Indeed most iPSC-derived organoids are models for embryonic rather than mature tissues, which can complicate interpretations. Where the technology is particularly helping Little’s lab is to validate variants of unknown function in genetic kidney diseases – derive iPSCs from patients, ‘fix’ the sequence with gene editing, and see if organoids can form normally; this is such a cool clinical use of organoids that I hadn’t appreciated before.

On the ethics side, Annelien Bredenoord emphasised the inevitable collision of organoid technology and ethics – we have to decide what the moral and legal status of organoids are. Do we treat organoids like any other patient-derived tissue? Are they most akin to cell lines, or something else? What types of consent do we expect patients to give? How do patients see their own oragnoids? And what about if private companies seek to use organoids?

How we answer these questions might really depend on definitions: for Melissa Little, organoids are really just an extension of iPSC differentiation protocols, and if so we need not radically rethink the guidelines that exist for iPSCs (for instance, those written up by the ISSCR). There is also a lot of difference between different kinds of organoids, depending on how complex an organ they are modelling. Plus, according to Jeurgen Knoeblich, the ethical concerns around those most provocative of organoids, cortical ones – “when will they think?” – are based on a perceived rather than a real risk to societal ethics, given that we are light years away from making something capable of a thought or a feeling. Later in the meeting Knoeblich told us about his lab’s efforts to make more complex and representative brain organoids. You can dorsalise one organoid, and ventralise another, culture them together until they fuse, and then observe neural migration from ventral to dorsal, a feature that previous cortical organoids lacked.

Bredenoord’s work involves asking patients what they think about organoids derived from their cells, and revealed ambivalence in one particular cystic fibrosis patient community. Melissa Little had a different experience with kidney patients: they want the opportunity to donate tissue or cells to any initiative that might help them, and organoids are no different; I heard similar things from Jayaraj Rajagopal. Bredenoord also described a reluctance to donate tissue if it was to be commercialised by a private company, and this was echoed by others and presumably a feeling not unique to organoids. Hans Clevers described a fix for this, which was to establish not-for-profits to run the biobanks and profit from commercial customers. The question of consent in biobanking has recently been explored by Tim Caulfield and Blake Murdoch in PLoS Biology.

Insoo Hyun, who sits on the ISSCR’s ethics committee, made the distinction between two types of research ethics: philosophical and practical. Philosophical ethics cover the questions of “should we be doing this?” and “is it wise?”, while practical ethics emphasises the regulatory guidelines in place once we’ve said yes to the philosophical questions. I guess we’ve pretty much gone into the practical side of things – no one in the session questioned the use or potential of organoids, though some thought the hype might catch up with us soon – but he reminded us of the need to really educate the public and justify what we are doing to cover the philosophical part. To paraphrase Hyun, “don’t just forget the public and leave it to committee”.

It was quite a compelling session, though I didn’t exactly come out of it with a clear feeling for where organoids stand from an ethical perspective; I guess that was the point of the session, perhaps the field is too young. For a more coherent discussion of the various ethical issues in hand I’ll send you to a couple of reviews by the speakers, one in Development and one in Science.

The rest of the day was spent in the aircraft-hangar-sized hall where the plenaries were held. It was funny seeing the great and the good walk up to the podium to the snippets of EDM bangers or Coldplay, though I was disappointed that none of them danced their way up. A series of research talks was followed by Sanford Greenberg, who, as a roommate of Art Garfunkel in college (we can thank Greenberg for financing Art’s initial union with Paul Simon), went blind and has since dedicated much of his life to ending blindness, “this wretched curse”. You can check out the website detailing his 3 million dollar prize for blindness research at endblindnessby2020.com.

 

 

That evening I actually managed to have dinner, at the Barking Crab – a raucous place on the water, with snow crab and another great IPA (Boston’s a wonderful place for a beer drinker).

 

 

Thursday 15th June

In the afternoon I had the mindhurt of trying to choose from one of seven (!) concurrent sessions. The ‘Single Cell Heterogeneity’ session featured so much single cell sequencing of organs and organoids that one almost came out of it feeling blasé about the whole enterprise – just to think of telling a developmental biologist from the eighties that she could sequence the genome of every cell in a developing organ! It wasn’t all sequencing though: David Scadden explored the role of the stem cell niche in blood development, starting with some history (read more here). In the seventies, Raymond Schofield had proposed the niche hypothesis but apparently was at loggerheads with Ernest McCulloch about it – he ended up leaving science and becoming a sheep farmer in Wales, where Scadden met him for a pint in the village pub to discuss his ideas. Scadden’s approach was to test the role of the niche by taking stem cells from one animal and place them into another. Under these new conditions, they behaved pretty much the same.  HSCs are very heterogeneous, but this is intrinsic rather than defined by the niche, and Scadden used a game-ey metaphor: rather than highly adaptive ‘transformers’, HSCs are like a collection of chess pieces with distinct functional attributes.

 

 

 

In the evening, dinner at an oyster restaurant with the Twitterati, and my first taste of these opinion-splitting molluscs (verdict: yup, with some hot sauce and lemon juice).

 

Friday 16th June

The highlight of the day was interviewing George Daley and Jayaraj Rajagopal for Development. Both are residents of Boston who come from clinical backgrounds but are in love with research, and are truly optimistic and excited about the wave of clinical translation of research into treatments. Both are also wonderful people who were generous in conversation with me; watch out for the final interviews in the coming months.

In a stimulating ‘Tissue Regeneration and Homeostasis’ session, Ben Simons began by apologising for being a physicist (though later he proudly showed us some of the first wet data from his lab). Simons uses mathematical approaches to understand developmental problems, and his talk focussed on the statistics of proliferation versus termination in mammary epithelial stem cells during pubertal morphogenesis. I’ve previously talked to Bill Harris about how Simons’ approach helped him understand the retina, and like the idea that sometimes we can be too burdened by knowledge, so a clear eye from a different field is needed to look at a problem. Given the number of collaborations Simons is involved in, his eye is in high demand.

 

In the evening I took the metro up to Cambridge though it was too rainy really to see much of it, and ate at a Tex Mex place with an old friend from old Cambridge (accompanied this time by Margaritas).

 

 

Saturday 17th June

I’d never been so moved at a scientific meeting – in the ‘Road to the Clinic’ session, Michele De Luca, well known for his promotion of responsible stem cell treatments and efforts to shut down charlatans, told us about epidermolysis bullosa, a terrible disease caused by a defective link between the dermis and the epidermis that can lead to skin blistering at even the slightest touch. De Luca described a patient with a severe genetic form of the disease, a child refugee from Syria who on his arrival to Germany had lost much of his epidermis to an infection and was in effect skinless, and placed in an induced coma for the pain it caused. De Luca’s solution was to grow skin from gene-corrected epidermal stem cells, and then graft this skin onto the child’s body (these were really huge grafts). And a couple of years on it seems to have worked – essentially the entire body is covered by transgenic skin that is now functioning like normal skin (faring better, indeed, than skin grafts used to treat burns, as the disease does not affect the underlying dermis like burns do). He ended his talk with a picture of the boy – standing slightly awkwardly in an ill-fitting suit in a hospital corridor, the most heart-wrenching contrast to the pre-treatment images De Luca had shown before. A kid in a coma to a kid standing and smiling.

An uplifting, miraculous story such as this shows us the potential of stem cells and gene therapy for treatment. As Megan Munsie then described, shadowing these remarkable advances is the growth of unregulated stem cell treatments. I remember a few years ago hearing that Texas Governor and GOP presidential candidate Rick Perry had had stem cells injected for back pain, and since we’ve seen an explosion in the number of clinics in the US and beyond offering stem cell treatments for just about anything (these are often covered by Paul Knoepfler’s excellent blog, the Niche). Not only might such treatments be expensive, and useless, they could of course also be dangerous. Munsie interviewed a number of patients who had sought such treatment – even if they understood the risk, for some it was really about the hope that it gave them, however small. Many of the patients (all based in Australia) felt let down by their own health care practitioners, which suggests we could do more to engage with patients who see no other way out than unregulated treatments.

A brief trip to see the tall ships that had gathered in the harbour, and that was that – back on the night flight to Heathrow, with the image of de Luca’s patient, smiling awkwardly, still in my head.

 

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PhD position in the mechanics of neuronal development in zebrafish – Paris

Posted by , on 25 July 2017

Closing Date: 15 March 2021

A 3-year funded PhD position is available at the Institut de Biologie Paris Seine to investigate the role of mechanical forces in the construction of a neuronal circuit in vivo.

During neuronal circuit formation, neurons move towards their final location while growing axons towards their target. While the biochemical guidance cues involved in neuronal migration and axon elongation are extensively studied, the contribution of mechanical forces in these processes remains largely unexplored in vivo.

In the lab we address this question using the zebrafish olfactory circuit as a model system. Its location underneath the skin of the embryo makes it amenable to live imaging and mechanical perturbation. We already obtained imaging and functional data suggesting an important function for mechanical cues in the formation of the circuit: olfactory axons extend through the effect of extrinsic mechanical forces that drive the passive displacement of neuronal cell bodies away from their axon tips (Breau et al., Nat Comm, in press).

The purpose of the PhD project is to further identify the origin and contribution of mechanical forces in the construction of the circuit, and the molecular mechanisms involved in force propagation and sensing. To achieve this goal, the student will use a pluridisciplinary strategy combining multiscale live imaging, genetic/optogenetic tools and physical approaches to measure and perturb forces in vivo.

 We are looking for a highly motivated student willing to join an interdisciplinary environment involving strong interactions between biologists and physicists.

 

Requirements:

– Master degree in cell/developmental biology or in biophysics

– Strong interest towards interdisciplinary work

 

Additional beneficial skills:

– Experience with zebrafish

– Skills in confocal, biphoton or light sheet microscopy

– Experience in image analysis (Image J, Matlab)

 

Starting date: between October 2017 and January 2018. To apply, please send your CV and references to Marie Breau, Institut de Biologie Paris Seine:

marie.breau@upmc.fr

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Postdoctoral position – Yale University

Posted by , on 24 July 2017

Closing Date: 15 March 2021

Postdoctoral Research Associate position is available in the Hoffman Lab at Yale University (www.hoffmanlab.net). We use zebrafish as a translational tool to investigate the function of genes that are strongly associated with autism spectrum disorders (Hoffman et al. 2016 Neuron). Specifically, we use CRISPR-generated zebrafish mutants to study how disruption of autism risk genes affects the developing brain and the neural circuitry underlying simple behaviors. Our goal is to utilize this system to identify basic mechanisms underlying autism and potential new pharmacotherapies.

Candidates must have a Ph.D., M.D., or M.D./Ph.D. in Neuroscience, Genetics, or Cell and Developmental Biology. The ideal candidate will have demonstrated expertise in standard and advanced molecular biology techniques, developmental neurobiology, and microscopy. Special consideration will be given to applicants with experience using animal models of human genetic disorders.

Candidates should be highly motivated, enthusiastic, learn quickly, have a strong work ethic, and a high degree of independence.

Please send your CV, a cover letter stating your research interests and professional goals, and the contact information for three (3) references to:

Ellen J. Hoffman, M.D., Ph.D.

Assistant Professor

Yale Child Study Center and Department of Neuroscience

Yale University School of Medicine
230 South Frontage Road
New Haven, CT 06520
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Research Associate 1 – Yale University

Posted by , on 24 July 2017

Closing Date: 15 March 2021

General Purpose:  Function as a Lab Manager overseeing a Molecular Biology Lab using a zebrafish model system. Research in the Hoffman Lab at Yale focuses on using zebrafish as a model system for the functional analysis of autism risk genes (www.hoffmanlab.net). Work on an independent research project, master generation of zebrafish mutants using CRISPR/Cas9 technique, maintain wild-type and mutant fish lines, characterize new mutant fish lines by genotypic and phenotypic analysis, supervise undergraduates and post-graduate associates in the laboratory and fish facility.

 

Required Education and Experience:  Master’s Degree in a scientific discipline and one year experience or an equivalent combination of education and experience.

 

Qualifications:

  • Demonstrated knowledge and ability with zebrafish husbandry and maintenance.
  • Demonstrated proficiency in molecular biology, including cloning, PCR, in vitro transcription, in situ hybridization, western blotting, and immunohistochemistry.
  • Demonstrated ability in zebrafish analysis and mRNA injection.
  • Demonstrated excellent interpersonal skills.
  • Demonstrated strong work ethic.
  • Preferred Education, Experience and Skills: Master’s Degree in the Biological Sciences, Neuroscience, Genetics or a related discipline, and one year experience or an equivalent combination of education and experience. 5 or more years of experience. Ability to lead and provide oversight in a lab setting.

 

Application: For more information and immediate consideration, please apply online at http://bit.ly/2txRpIY. Please be sure to reference this website when applying for this position.

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Editorial changes

Posted by , on 24 July 2017

This Development Editorial appeared as an advanced online article on 21 July.
Olivier Pourquié, Katherine Brown

 

Here at Development we are very sad to be saying goodbye to two of our editors: Ottoline Leyser and Geraldine Seydoux. Both Ottoline and Geraldine have been valued members of the editorial team since 2011, and we are hugely grateful for the time and effort they have put in to handling research papers, helping to shape the journal’s future plans and, in Ottoline’s case, coordinating our 2016 Special Issue on Plant Development. They will both be greatly missed, but will maintain connections with and continue to provide input on the journal as members of our Editorial Advisory Board.

Taking their places, we are delighted to announce two new editors: Yka Helariutta and Susan Strome. Yka is taking on Ottoline’s role as Development’s plant editor. After a PhD in plant genetics at the University of Helsinki, Finland, Yka undertook postdoctoral research at New York University and New York Botanical Garden with Philip Benfey before moving back to Helsinki in 1998 to establish his own lab. From 2003 to 2014 he was also affiliated with the Umeå Plant Science Centre in Sweden, and was elected as an EMBO Member in 2008. In 2014, Yka became Professor of Plant Developmental Biology at the University of Cambridge, UK, and moved to the Sainsbury Laboratory, although he still runs an active group in Finland. Yka’s work focusses on vascular development in plants, from patterning to cell differentiation. He primarily uses Arabidopsis as a research model, but is also interested in how the basic molecular mechanisms operate in species with an extensive vascular domain, such as trees.

Susan Strome began her career as a biochemist working on bacteriophages at the University of Washington, before moving to the University of Colorado for a postdoc with William Wood. There, she started working on the C. elegans germline – an interest that has continued throughout her career. Susan gained an independent position at Indiana University in 1984, staying there until 2007, when she moved to the Department of Molecular, Cell and Developmental Biology at the University of California, Santa Cruz, where she currently holds the position of Distinguished Professor. A Member of the American Academy of Arts and Sciences, Susan’s current research focusses on how cells are instructed to develop as germ or soma, and particularly on how chromatin regulators act to promote and maintain germline fate.

One other significant piece of news is that I [Olivier] will be stepping down as Development’s Editor in Chief in September 2018, after 8 years in the role. During this time, I have tried to adapt the journal to the new challenges faced by developmental biology. Notably, I have tried to engage the journal more actively with the stem cell field and, more recently, with human developmental biology. I have also sought to promote emerging fields such as evo-devo and quantitative biology. We have added new sections to the journal: the ʻTechniques and Resources’ and ʻStem Cells and Regeneration’ sections, which have proved to be very popular. We have also tried to listen to the community and implement a number of changes to the submission and review processes. My time as Editor in Chief has been a fantastic experience and I am pleased I had such a great opportunity to serve our community. However, I think turnover is important to maintain journal dynamism and I have chosen to end my tenure at the 2018 Development/The Company of Biologists meeting ʻFrom Stem Cells to Human Development’, which I am co-organising (for details, please see http://www. biologists.com/meetings/from-stem-cells-to-human-developmentseptember-2018/).

Both the journal, which has undergone significant changes during the past 8 years, and the field as a whole are, right now, in an exciting place. We are of course aware of the challenges that researchers face in today’s funding and publishing environment, but we continue to believe that developmental biology has a bright future. Not only can we now use stem cells, genomic and other techniques to analyse human development as never before, but traditional and new model systems are also being exploited in evermore innovative ways to understand the molecular, cellular and physical bases of development across evolution in unprecedented spatiotemporal detail.

We (The Company of Biologists and Development) are enthusiastic about the prospects for developmental biology, and part of our mission is to support you, the research community. We are seeking a new Editor in Chief with a strong vision for Development at the heart of the field. This search will be led by members of The Company of Biologists’ Board of Directors: Sarah Bray, James Briscoe and Kate Storey. As a key part of the process, we want to consult a broad cross-section of the developmental biology community about the strengths of Development, where we can improve, into which (new or existing) areas the journal should expand and what more we can do to support our field. We therefore encourage you to get in touch with any feedback that you may have, particularly where you think it might be helpful in directing our search for a new Editor in Chief. Please contact Sarah, James and Kate – along with Development’s Executive Editor Katherine Brown and the Company’s Publisher Claire Moulton – via dev.feedback@biologists.com, or get in touch with any of us individually. With over a year to go before Olivier steps down, we are happy to have the time to gather and digest community input to help us make the right choice for the next Editor in Chief and ensure that Development continues to hold an important place in the community long into the future.

 

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Meet Evan Brooks – The 2017 Choose Development! Fellow selected to spend one week with the Embryology Course

Posted by , on 21 July 2017

Evan Brooks at MBL

Evan Brooks is a rising senior at North Carolina State University. For the past two years, he has worked in the lab of Nanette Nascone-Yoder studying the developmental mechanisms of cardiac left-right asymmetry using Xenopus as his model system. Evan was awarded a Choose Development! Fellowship from the Society of Developmental Biology to conduct two summers of mentored research in developmental biology. He was selected to spend one week with us at the Embryology Course this year. I had the pleasure of working next to Evan for the zebrafish and Xenopus module. I thought I would take this opportunity to check in with Evan and ask him a few questions!

 

Were you told any stories of Woods Hole or did you know anything about the course before you arrived?

Before getting my invitation to join the course, I had only heard of Woods Hole and the Embryology course in passing in the lab. I had never heard of anyone’s stories or experiences with Woods Hole or the Embryology course.

When I got my invitation in May from SDB to join the course for a week, Nanette talked to me about her experience in the course when she was a graduate student. She not only told me how much she enjoyed the course, but also how it allowed her to think more about the evolutionary similarity between model organisms. She also told me how much fun she had in Woods Hole when she wasn’t in the lab, whether it was looking at bioluminescence in Eel Pond or staying up late with her classmates at Captain Kidd. With the knowledge about her experience and its impact on her, I was super excited to join the course for a week.

Did your time in the Embryology course match what you had anticipated?

I will say that I was expecting to be immersed in science while I was there. I looked at the schedule before arriving and was excited to see so many prominent developmental biologists, like Richard Harland and Ray Keller, participating in the course in some way. I was totally expecting to be thinking about possible new experiments all the time.

However, I was not expecting to dive headfirst into the course on my first day in the lab and stay up super late conducting experiments. I was up past 1am every night and woke up every morning around 7am to get back into the lab and check my experiments. On the day I left Woods Hole to return home, I got up at 5am to finish an in situ hybridization before catching a 7:20am bus ride to Boston Logan airport. I was committed to performing so many experiments and seeing them all pan out during my one week and I do not regret it.

What was the most memorable part of your week?

I’d probably say the camaraderie within the program and how integrated I felt in the course is what I will remember most from my week. Everyone was so welcoming and I was frequently included in microscope demos down in the basement of Loeb Laboratory, on coffee runs before lectures, and during meals in Swope Hall. Also, people would encourage me to stay up into the wee hours of the morning with them to try a new experiment. Everyone that I talked to was interested in my research at NC State and what I was doing in the lab during the course. As the week progressed, I was told by more and more people to talk to the course directors, Rich Schneider and Dave Sherwood, to see if there was any way to extend my stay. I really wish that I could’ve extended my stay as I was just getting comfortable with working in the lab and getting to know everyone when it was time for me to leave. I’m still connected to everyone in the course through WhatsApp and I know that I’ve made at least twenty-four new friends.

What did your learn during the week?

Scientifically, I learned so many new things in the course. I learned so much about the current research going on in Xenopus and zebrafish labs around the world, like work on liver regeneration and development in Elke Ober’s lab and the roles of planar cell polarity in development in John Wallingford’s lab. The one lecture that I was most intrigued by was Andrew Gillis’ lecture about gill arch development in skates and its comparative development to limb buds. The ideas, techniques, and approaches presented in the lectures that week showed me how broad the field of developmental biology really is.

From the course, I’ve also learned to take more risks not only in the lab, but in life in general. Taking a week off from my research at NC State to come to Woods Hole was somewhat of a risk as I had to get more data and prepare for my presentation at the SDB Annual Meeting a few weeks after my return. The risk ended up being well worth it in the end as I learned a lot more about myself and developmental biology in that one week.

How did this course change how you approach your current research at NCSU? Did it impact your future plans?

Evan working in lab in Loeb

In terms of working with my hands in the lab, I can say that I have a greater confidence with microinjecting Xenopus embryos. Before the course, all of my embryos would die after microinjections. I can’t really say what caused my embryos to die, but I moved away from microinjection experiments for a bit in the lab. During my week in the course, John Young, one of the Xenopus TAs, showed me how he calibrated his needles and  microinjected his embryos. After employing his method, I had quite a few successful morpholino microinjection experiments that I used as the basis for my show-n-tell at the end of the week. I even had the chance to microinject zebrafish embryos and those survived injections too! With my new confidence in microinjecting, I’m looking to incorporate that technique back into my lab repertoire.

Additionally, one thing that I realized that I did not take advantage of during my time in the Embryology course was the cutting-edge microscopy. Before the course, I had only used light microscopes in my lab. During the show-n-tell at the end of my stay, there were so many amazing time-lapse movies and images of cells, tissues, and embryos that I was in awe! I can say that this alone has changed the next steps of my project as I’ve talked to Nanette about designing experiments that will allow me to use other types of microscopes available. I know that there is an expansive microscopy core at NC State, so I may ask for a guided tour in there soon. In terms of my next steps in the Nascone-Yoder lab, I’m planning on performing some antibody stains and confocal microscopy for a few proteins to understand their left-right distributions during developing heart tube stages. I hope to get some pretty images that may be used in a future publication from the Nascone-Yoder lab!

This opportunity is given yearly by SDB, is there any advice you would give to next year’s Choose Development! Fellow who will come to the Embryology Course?

Do not be afraid to jump right in by planning experiments and making friends! The course directors, the instructors and TAs, and fellow course participants are all there to help and get you acclimated to the course and Woods Hole. I remember staying up until 2am with Ray Keller one night because I wanted to learn how to create a two-headed Xenopus embryo. Even though I failed miserably (probably due to exhaustion), he was super patient with me and made sure that I gave it my best effort.

Do you have anything else you would like to include?

I thought I was super excited about embryology and developmental biology before the course. My level of excitement for the discipline has grown so much to where I feel that putting my excitement into words will not accurately describe it. I’m glad that I had the opportunity to experience one week of the course. I am totally looking forward getting into a Ph.D. program and reaching candidacy so that I can be eligible to return to Woods Hole to experience the full six-week course!

 

Lastly, I honestly cannot thank SDB, Dave Sherwood, and Rich Schneider enough for allowing me to experience one week of the Embryology course this year and for past course directors, Richard Behringer and Alejandro Sánchez Alvarado, for spearheading the idea of inviting Choose Development! Fellows to the course for a week. Past Fellows that I’ve met that have participated in the course absolutely love the experience and I am glad we can partake in this course. The course has helped me affirm my desire to pursue a career in developmental biology!

 

To check out all the cool things we did during the course follow us on Twitter #embryo2017 or instagram #embryology2017

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