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A day in the life of a returning Spider Lab

Posted by , on 14 July 2020

Alistair McGregor’s group at Oxford Brookes University uses Drosophila and the common house spider Parasteatoda tepidariorum to understand how different shapes and sizes of animals evolve. Back in 2016, two PhD students in Alistair’s lab shared a day in the life of a spider lab.

Four years and one pandemic later, we caught up with Alistair to find out how his lab has responded to the ongoing Covid-19 crisis.

‘Normal’ spider care

The lab’s spider culture was originally founded from spiders collected from a basement in Göttingen, Germany. The spiders are fed twice a week, Mondays and Fridays, and mated females get an extra feed on a Wednesday. Females get crickets while males and juveniles are given flies.

In normal circumstances, lab members collect cocoons from females, which are produced every four days. There are usually hundreds of embryos per cocoon. Developing embryos can be kept in halocarbon oil so that the team can identify the exact stage of embryogenesis. This is key for the different approaches the lab uses to study development. It takes about 10 days for the embryos to develop into translucent, hairless, immotile hatchling spiders. Once the juveniles have progressed through several moults and eaten some flies, and siblings, they are separated into individual vials. It takes several weeks after hatching for the spiders to reach reproductive maturity.

The return of the Spider Lab

Over Zoom, we spoke with Alistair to find out about his lab’s lockdown and the return to the bench.

We have made a safe plan.

“People are going in on Mondays to Fridays in shifts. There are three shifts a day and we have divided the lab up into different zones. In the first phase, there will be one person in each zone. As we move forwards I hope we can put more people in the labs while maintaining social distancing. The teaching labs are available over the summer, so that has given us a bit more space to use!”

We had reached the stage where people were keen to return.

“The rest of the UK is opening up to some extent, but we want people to feel comfortable and safe. Therefore the university has permitted researchers to voluntarily return to the research labs to carry out work that cannot be done at home. To avoid using public transport we have allowed people to drive in and use the car park even if they do not have a permit.

The university allowed essential maintenance during lockdown, so some people could go in and cook fly food or flip the stocks. There were three major Drosophila flips during lockdown, so that kept us going. As for the spiders, they are not dangerous or genetically modified, and so one of my postdocs took them home! They are happily back in the lab, but she was feeding them at home for a few weeks.”

We had two new PhD students do their rotations during lockdown.

“They were expecting lab work but they got bioinformatics projects instead! They were both successful though and have resulted in two submitted papers. We have an annual monitoring process for PhD students where they have to submit a report every summer, so my students also worked on that.”

We are trying to prioritise access for final year PhD students.

“There might be a second lockdown, of course we have no idea. That is why we have started to go back with a conservative plan. We are trying to prioritise access for final year PhD students so that they can finish vital experiments.”

Morale has stayed high!

“The lab is a positive bunch. We still had meetings and journal clubs, and a virtual pub quiz every week. At the start I think we were wondering what we could do at home, but then it became overwhelming because there was so much that could be done!”

We’d love to hear how any of our ‘A day in the life’ labs are doing and how you’re returning to the bench, so please do get in touch if you have a story to share!

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Back to bench is resetting my mental clock

Posted by , on 13 July 2020

My university has reopened and being reunited with the lab bench after months have reminded me again how much I love what I do for a living. Of course I enjoy the entire process of research from bench to publication, troubleshooting experiments and brainstorming ideas to presenting research stories. However, hands-on working is something I relish the most. It has a tangible and stimulatory effect on my experimental thought process and in general how I perceive and approach scientific questions.

Staying home for more than three months has been the largest break in my life since kindergarten and has affected my mental wellbeing. I had moved to Boston as a postdoc to study how forces shape tissue patterning and morphogenesis in zebrafish, after finishing PhD in single-molecule plant development in Tübingen, Germany. However, within two months of my arrival in Boston, Harvard stopped all the non-essential research due to soaring coronavirus pandemic.

Living pretty much alone in house arrest in a new city away from my partner and family has been extremely stressful and emotionally difficult. The new lab has been very supportive and connected throughout but the isolation – paired with the rejection from the postdoctoral fellowship I applied for – has given me an imposter syndrome. I felt the sadness growing, my moods shifting, confidence losing, and fear building in me.  For example, during scientific zoom meetings with the lab and the department, I was not able to communicate my thoughts and ideas properly because being out of the lab and staying in isolation was toying with my state of mind. Of course, afterwards I then dealt with the guilt of it. The murder of George Floyd further added frustration and anger about the world we live in and how we treat each other. I could feel and acknowledge my worsening mental health. Therefore, I constantly talked about my feelings with my partner and my best friend who have been incredibly supportive irrespective of our separation by the continents. Although communication helps, I felt I still need tangible positivity to pull me out of the mental black hole. So, I have been taking time to reflect on positive things. For example, I have been excitedly rethinking about the scientific problems I am interested in and ways to approach them differently. And besides science, reading literary and historical fiction and baking cakes and pastries. I am sure I am not alone in experiencing such mental instability in this time. Each one of us is experiencing stress and anxiety in our own ways. What is most important is to acknowledge the symptoms and seek the help and support we need.

When I heard the university was reopening and we could go back to the lab, I was thrilled. This is exactly the positivity I think I have been longing for. The flipside to this positivity is that I was nervous about going back. I joined a zebrafish developmental and systems biology lab and had learned how to do crossings and microinjections in zebrafish right before the shutdown. Obviously, I have been anxious that I had forgotten the newly learned methods and whether I would be able to find reagents and consumables in the lab.

Now that I am in the lab again, of course, it is all the same as I knew it, physically. Except that the labs, corridors, hallways, bathrooms, meeting points, and common areas are labelled with safety distance reminders and are awfully silent and empty. There are no social hours or physical meetings. It feels like working late over Christmas. Even fish in the lab probably miss the hustle-bustle of colleagues. I, on the other hand, am delighted to be back in the lab and to see a few familiar masked faces around. Foremost, it is getting me back into the workday routine and breaking the monotony of alone and ‘relaxed’ working from home. More importantly, I am thrilled to be working on the bench again. I think there is an eternal joy that we wet-lab scientists find in bench work. To get back into the familiar working spirit, I resumed by molecular cloning experiments, which I am most comfortable with. Seeing bacterial colonies on the agar plate the day after bacterial transformation have already started to diminish my feelings of being an imposter. Turns out, I can still cross zebrafish and pull needles for microinjections. I am starting to find purpose again, after all work is the reason I moved to the US.

 

Happy to be back at the bench although atmosphere in the lab and institute is not the same as pre-CoViD era.

 

Although we are working in spatially and temporally coordinated lab shifts, the motivation to be in the lab and conduct experiments is more than enough for me to be feeling mentally healthy again. I understand it is not the ideal situation for any of us. But neither is the uncertainty of normality. I think by embracing little steps towards normality, we can overcome the mental hurdles posed by the pandemic. I realise my mental clock has started to shift towards normal: being back at the bench is definitely the sweeter side of our bitter-sweet labcoming experience.

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Categories: Careers, Lab Life, Research

We are seeking a Sequencing Specialist to join DanStem and CPR at the University of Copenhagen

Posted by , on 13 July 2020

Closing Date: 15 March 2021

Background

DanStem addresses fundamental research questions in stem cell and developmental biology and has activities focused on the translation of promising basic research results into new therapeutic strategies for cancer and chronic diseases. DanStem is a vibrant, internationally diverse and ambitious research center with state-of-the-art facilities. The setting is ideally suited for seamless collaboration and exchange with other centers and departments of the Faculty and Copenhagen science community.

Learn more about DanStem at https://danstem.ku.dk.

CPR promotes basic and applied research on human proteins of medical relevance. CPR spans broad areas of protein research, ranging from structural and mechanistic understanding of proteins and their cellular functions in chromatin biology and genome maintenance, to development of clinical applications of proteomics and systems biology. The vision of CPR is to combine the power of integrative protein technologies and their application to accelerate understanding of the biological processes underlying health and disease.

For more information about CPR, please visit http://www.cpr.ku.dk.

The genomics platform was established in 2017 by DanStem and CPR and currently employs a sequencing specialist and a bioinformatics specialist. We are seeking a highly motivated and ambitious candidate to join the platform and replace our current sequencing specialist.

Job description
The role of the next generation sequencing (NGS) specialist is to ensure daily management of the Genomics Platform. The tasks include: training and assistance on library preparation, running the sequencer, training the users on platform instruments (e.g. Fragment Analyzer, liquid handling robot), providing advice on genomics tools and troubleshooting. It also includes ordering, stocking and supplying consumables. In addition, the applicant will be expected to push forward new genomics applications in collaboration with users.

Your profile

  • A degree in biotechnology, molecular biology, or appropriate biological or biomedical science with either PhD or MsC.
  • Theoretical and practical knowledge of NGS sample preparation workflows and applications.
  • Broad experience with functional genomics technologies (RNA-seq, ATAC-seq, ChIP-seq, HiC, scRNA-seq, etc.).
  • Previous experience with NGS bioinformatics is a plus.
  • Good English communication skills, both oral and written, are required.

We offer

  • stimulating, challenging and multifaceted research environment
  • possibility for continued education and training
  • attractive employment conditions
  • central located workplace.

Employment conditions
The employment is a permanent position and is scheduled to start in September 2020 or upon agreement with the chosen candidate. The place of work is at DanStem, University of Copenhagen, Blegdamsvej 3B, Copenhagen. Salary, pension and terms of employment are in accordance with the provisions of the collective agreement between the Danish Government and AC (the Danish Confederation of Professional Associations).

In addition to the basic salary, a monthly contribution to a pension fund is added (17.1% of the salary).

The employment will be as Research consultant (Specialkonsulent) depending on the selected candidate’s experiences and qualifications and the working time are 37 hours per week on average

Application
Your application must be submitted in English by clicking “Apply now” below and must include:

  1. Motivation letter
  2. Curriculum vitae incl. education, experience, previous employments, language skills and other relevant skills
  3. Copy of diplomas/degree certificate(s).

Only applications received in time and consisting of the above listed documents will be considered. Applications and/or any material received after the deadline will not be taken into consideration.

Deadline for applications: Sunday 9 August 2020, 23:59 p.m. CET.

Questions
For further information about the position, please contact Professor Joshua Brickman by e-mail: joshua.brickman@sund.ku.dk.

The Faculty of Health and Medical Sciences comprises approximately 7,850 students, 1,700 PhD students and 4,800 employees. The Faculty advances the field of health sciences through its core activities: research, teaching, knowledge sharing and communication. With basic research fields ranging from molecular studies to studies of society, the Faculty contributes to a healthy future through its graduates, research findings and inventions benefitting patients and the community. The University of Copenhagen wishes to reflect the surrounding community and invites all regardless of personal background to apply for the position.

APPLY NOW

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Phase separation mediated Par complex cluster formation in cell polarity

Posted by , on 13 July 2020

Ziheng Liu and Ying Yang

The asymmetry in cell morphology and the asymmetric distribution of intracellular organelles, proteins, nucleic acids and other components are the hallmarks of cellular polarity, possessed by most, if not all, cells. Polarity plays important roles in cell differentiation and function, and its dysregulation is intimately related to developmental defects, tumor formation and cancer metastasis. The commonality of cell polarization events is that some polarity-regulating proteins (such as the Par3/Par6/aPKC complex, or the Frizzled/Dishevelled/Diego complex) are specifically recruited to the designated subcellular area and form local aggregates, attaching to the inner surface of the plasma membrane. These protein aggregates are dynamic and assemble and disassemble quickly in response to cellular signals [1-3]. How these protein complexes can achieve polarized concentration on the premise of open contact with the cytoplasm while maintaining a high degree of dynamics has been an open question.

In recent years, the “liquid-liquid phase separation” (LLPS) of biomacromolecules has emerged as an important mechanism underlying the formation of a variety of membraneless structures within cells [4,5]. The aggregates of polarity proteins share some similar characteristics with these membraneless structures, such as high condensation and dynamic equilibrium with proteins in cytoplasm.

We showed previously that during the asymmetric divisions of Drosophila larval neural stem cells (or neuroblasts), cell fate determinants including Numb and Pon undergo LLPS. Multivalent interactions lead to the polarized enrichment of the Numb/Pon complex on the basal cortex of dividing neuroblasts, which regulates the differentiation of the ganglion mother cell (GMC), the differentiating daughter of the neuroblast, upon cell cycle exit [6].

On May 8, 2020, we published a research work titled “Par complex cluster formation mediated by phase separation” online in Nature Communications [7]. The paper provides evidence showing that the apical Par protein complex is also assembled via a LLPS mechanism, thereby regulating the establishment of the neuroblast apical-basal polarity and consequently the distinct cell fate of neuroblast daughters.

One of the best-studied polarity complexes, the highly conserved Par complex is composed of Par3 (Bazooka in Drosophila), Par6 and aPKC, which can interact with each other to form a polarity core and further recruit other polarity proteins. During the interphase of neuroblasts, these polarity proteins are distributed throughout the cytoplasm. Upon mitotic entry, Par3, Par6 and aPKC gradually accumulate underneath the apical cortex and form a multiprotein-containing apical complex, which directs the basal enrichment of those cell fate determinants including the Mira/Pros/Brat/pros mRNA complex and the Pon/Numb complex, via aPKC-mediated phosphorylation events. Upon the completion of mitotic cycle, the Par3/Par6/aPKC complex remains in the neuroblast daughter and the complex is dissembled, whilst those cell fate determinants are preferentially segregated into the GMC daughter to promote its differentiation. In this latest work, we showed upon mitotic entry Par3 (or Baz) forms apically-localized liquid droplets, which is mediated by its N-terminal domain (NTD) harboring oligomerization activity. These liquid droplets subsequently fuse and assemble into a highly concentrated cluster around the apical pole, forming the condensates underneath the apical cortex. Par6 is recruited to the Par3 condensate through the specific binding of its C-terminal motif to PDZ3 domain of Par3. Interestingly, the incorporation of Par6 into Par3 condensates greatly promotes the LLPS of Par3 via multivalent interactions.

As the only known kinase in the complex, aPKC can also be recruited and enriched in the Par3/Par6 condensates, but aPKC in the droplets is surprisingly in an inactive state. Interestingly, activated aPKC can phosphorylate Par3 and promote dissolve of the Par3/Par6 aggregates. Based on these observations, we speculate that the formation of the Par condensed droplets may provide an effective platform to recruit and concentrate the limited aPKC from the cytoplasm to the apical sub-membrane area, where aPKC can be activated by cell cycle regulatory factors (such as Cdc42) upon mitotic entry, and subsequently phosphorylate Par3, which eventually leads to the dissembly of the Par protein aggregates. Meanwhile, the activated aPKC also mediates the basal segregation of the fate determinants through its kinase activity. Interfering with the formation of Par3/Par6 LLPS will disrupt the establishment of the apical-basal polarity during the asymmetric divisions of Drosophila neuroblasts, leading to the defects in the development of neuronal lineages (Figure 1). This study, together with our previous work, shows that the LLPS, mediated by the multivalent interactions among these polarity proteins, plays important roles during the establishment of Drosophila neuroblast polarity.

Although LLPS provides a new perspective for the formation of a large number of membraneless structures in cells and the selective enrichment and separation of cellular components in various physiological processes, whether it regulates these biological processes under physiological conditions has always been the focus of debate. One main reason is that LLPS is largely dependent on the protein concentration, and the concentration of the target protein used in cell overexpression systems and in vitro experiments is often higher than that under the physiological conditions.

To test this, we established GFP knock-in Drosophila strains expressing GFP-tagged Baz under its endogenous regulatory elements, and explored the role of LLPS (of Baz) in the establishment of neuroblast polarity at an endogenous setting. In sharp contrast to the overexpression assay results showing that Baz ΔNTD (deleting the N-terminal domain, thus compromising LLPS ability) lost its apical condensation in both WT and baz mutant backgrounds, the knock-in mutant Baz ΔNTD surprisingly exhibited obvious apical condensation (crescent formation). However, it also exhibited significant cytoplasmic diffusion, which likely explains the observed smaller brain phenotype. More importantly, replacing the Baz NTD domain with a low complexity domain (LCD)-containing fragment of FUS, which has no secondary structure but can phase separate, also significantly rescued brain development abnormalities caused by NTD deletion (Figure 1). These results provide strong support for the hypothesis that the polarized distribution and establishment of the Par complex is mediated by LLPS, and also points out the importance of protein concentration when assessing the LLPS for protein of interest. It further suggests that the results obtained form in vitro or over-expression study need to be interpreted with caution.

In summary, our study reveals that the LLPS mediated by the multivalent interactions among the polarity proteins Par3, Par6 and aPKC promotes their condensation beneath the apical membrane, and the rapid response of the phase-separated condensates to cellular signals also ensures a high dynamics in the assembly and disassembly of cellular polarity. Since most polarity complexes contain multidomain proteins able to form condensed puncta, and these puncta are in dynamic equilibrium with proteins in cytoplasm, the LLPS proposed in this study may be a general mechanism for the establishment of cellular polarity.

Figure 1. Phase separation of Par complex regulates the polarity establishment of neuroblast. Figure 9 in Liu, et al. Nature Communications 2020.

 

Fudan University doctoral student Liu Ziheng, master student Gu Aihong, and National University of Singapore Dr. Yang Ying are co-first authors. Fudan University PI Wen Wenyu and Singapore National University Professor Cai Yu are co-corresponding authors.

1. Rodriguez-Boulan, E. & Macara, I.G. Organization and execution of the epithelial polarity programme. Nat Rev Mol Cell Biol 15, 225-42 (2014).
2. Knoblich, J.A. Asymmetric cell division: recent developments and their implications for tumour biology. Nat Rev Mol Cell Biol 11, 849-60 (2010).
3. Yang, Y. & Mlodzik, M. Wnt-Frizzled/planar cell polarity signaling: cellular orientation by facing the wind (Wnt). Annu Rev Cell Dev Biol 31, 623-46 (2015).
4. Shin, Y. & Brangwynne, C.P. Liquid phase condensation in cell physiology and disease. Science 357(2017).
5. Banani, S.F., Lee, H.O., Hyman, A.A. & Rosen, M.K. Biomolecular condensates: organizers of cellular biochemistry. Nat Rev Mol Cell Biol 18, 285-298 (2017).
6. Shan, Z. et al. Basal condensation of Numb and Pon complex via phase transition during Drosophila neuroblast asymmetric division. Nature Communications 9, 737 (2018).
7. Liu, Z. et al. Par complex cluster formation mediated by phase separation. Nature Communications, 11(1) (2020).

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Inclusion and diversity in publishing – a joint commitment for action

Posted by , on 9 July 2020

In early June, as Black Lives Matter protests were gathering momentum across the globe, a group of publishers were brought together (virtually of course) by the Royal Society of Chemistry (RSC) to discuss equality, diversity and inclusion (EDI) in academic publishing activities. While the timing of this workshop was completely coincidental, the experiences shared by Black researchers through, for example, #BlackintheIvory on Twitter lent a sense of urgency to our meeting. Many publishers, The Company of Biologists included, had already begun to think about disparities and biases in publishing, particularly in terms of gender imbalance (as discussed in our recent editorial), but we all recognise that there is much more we need to do.

What came out of that workshop was a Joint Statement committing to action – to better understand our research communities, better reflect that diversity, and to set and share policies to improve EDI practices across multiple publishers. In the video below, I spoke to our Science Communications Officer, Annabel, about the joint statement and the Company’s plans for the future.

We are very much at the beginning of our EDI journey, but we’re looking forward to working with other publishers to come up with concrete actions we can take. And we’re excited about the opportunities that the Node Network has to help diversify our conferences, departmental seminars and other activities – particularly in the virtual world, geography is no boundary to invitations to speak! If you haven’t already signed up for, or looked at, the Node Network, we encourage you to do so.

And, as always, we’re keen to hear from the community about what we should be doing from an EDI perspective, so please do get in touch!

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Research Assistant Professor – Microscopy Core Manager

Posted by , on 7 July 2020

Closing Date: 15 March 2021

The Department of Biology at the University of Mississippi is seeking a qualified individual to run a new optical microscopy core with several imaging systems including a new Leica LSCM.

The successful candidate will be expected to 1) manage the use of the core imaging systems, 2) train new users on the use of the microscopes and in image analysis, 3), assist new users obtain the best possible images and analyze these images, 4) develop new imaging protocols, 5) consult with users on sample preparation, and 6) help maintain the microscopes and imaging systems.

Applicants are expected to have expertise with confocal microscopy and advanced optical microscopy techniques. Applicants should also be familiar with techniques for image analysis, and experience with imaging glycans is a plus. This position includes opportunities for continued professional development. Women and individuals from underrepresented groups are strongly encouraged to apply.

To apply, please visit our Online Employment Service at https://careers.olemiss.edu/.  Applications should include: (1) cover letter outlining interest in and suitability for the position, (2) a curriculum vitae, (3) names and contact information for at least three references.

 

About the employer

Founded in 1848, the University of Mississippi (UM), affectionately known to alumni, students and friends as Ole Miss, is Mississippi’s flagship university. Included in the elite group of R-1: Doctoral Universities – Highest Research Activity by the Carnegie Classification, it has a long history of producing leaders in public service, academics and business. The University of Mississippi, consistently named by The Chronicle of Higher Education as a “Great College to Work For,” is located in Oxford, MS, which is ranked one of the “Top 10 Best College Towns.” With more than 24,000 students, UM is the state’s largest university and is ranked among the nation’s fastest-growing institutions. The University of Mississippi, which has aggressively implemented many health and wellness initiatives for its more than 2,900 employees, has consistently been named one of Mississippi’s Healthiest Workplaces.

Touted as the “Cultural Mecca of the South”, creativity abounds in Oxford as musicians, artists and writers alike find inspiration in Oxford’s rich history, small town charm and creative community. Oxford is a one-hour drive south of Memphis, TN and is known as the home of Nobel Prize winning author William Faulkner. Over the years Oxford has also been known for offering exceptional culinary experiences and as the home of the University of Mississippi and the Ole Miss Rebels, there is always something here to immerse yourself in. Oxford has also been featured as a literary and arts destination in such publications as The New York Times, Southern Living, Condé Nast Traveler, and GQ. Among other cultural activities, annual events include the Oxford Film Festival, a thriving local music scene, and the Ford Center Performing Arts Series. Oxford is a vibrant university town, filled with unique shops and galleries, eclectic restaurants and clubs, historic landmarks, and comfortable inns.

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Categories: Jobs, Uncategorized

An ode to the Node: 10 years in the life of a community blog

Posted by , on 7 July 2020

This Editorial by Aidan Maartens, Katherine Brown and James Briscoe was published yesterday in Development. Don’t forget that we’re celebrating 10 years with a free online networking event on July 29 – more details here.


In 2009, we asked our authors and readers for feedback on how the journal was doing and for suggestions of new ways we could serve and support the community. Many responses concerned our rather limited online presence. Our website, for instance, was deemed outdated, and so in January 2010 we relaunched it with a new design and improved navigation. But there were also calls to think about doing something different: could we create an online space for the global developmental biology community to interact, exchange ideas, advertise positions and events, and so on? Nothing like it existed at the time, and the idea seemed timely. As a community journal, Development was also well-placed to host such a site, and so we decided to go ahead with the project, with new Editor in Chief Olivier Pourquié at the helm. Funding from our publisher, The Company of Biologists, allowed us to develop and market the site, and to hire a dedicated website Community Manager, Eva Amsen, to run it. And so, in June 2010, the Node (thenode.biologists.com) went live. Named both after a connection point in a network and an eminent embryonic organiser, the Node would be a ‘community-based, one-stop shop for developmental biologists’ (Amsen et al., 2010).

In the decade since launch, although the Node has undergone a couple of redesigns and added some new features, the format and functionality has stayed the same: a blog (with newest posts appearing at the top of the homepage), a jobs board and an events calendar. It’s perhaps still under-appreciated that anyone can contribute to the Node: all you have to do is register for an account and start posting. Any moderation by the Community Manager is ‘post-publication’, although of course we’re happy to provide feedback on drafts. Readers can also comment on and rate posts. The Node is intended to be your site – a place where anyone in the community can post on any topic of relevance.

Blog posts (of which there have been 2488 so far) have covered everything from meeting reports to research highlights, image competitions to topical discussions, career stories to society calls. They have been written by authors from across the world, from undergraduates to professors, singly or in groups. Posts can be as simple as a call for information, or as extensive as a five and a half thousand word historical portrait (by Máté Varga, thenode.biologists.com/doctor-delayed-publications-remarkable-life-george-streisinger/careers). We have also run regular series of posts: ‘Forgotten Classics’, on unjustly neglected papers in developmental biology; ‘A day in the life of an X lab’, showcasing the diversity of developmental model organisms (Xenopus inaugurated the series; onychophorans are the most recent addition); ‘The people behind the papers’, our interview series that puts faces to the names on the author list (and that, in 2018, migrated to print in Development); and an alternative careers series, on all the other things scientists can do with their PhDs. Our jobs board (1172 jobs posted so far) is consistently well-read, and we often hear from people who got their ideal job, or their ideal student or postdoc, thanks to it. Our events calendar (1654 events posted so far) provides a promotional platform for organisers of meetings big and small. Finally, in 2015 we added a dedicated resources page, which contains useful links covering advocacy and outreach, education, audiovisuals and research methods. The page was greatly improved in 2017 thanks to an intern, Sarah Morson, who worked with the British Society for Developmental Biology’s Communication Officer, Andreas Prokop.

Although Community Managers have changed – Eva was followed by Catarina Vicente in 2013, and Catarina by Aidan Maartens in 2016 – the role continues to be vital, as we have discussed previously (Vicente et al., 2017). As well as maintaining the site and commissioning new content, the Community Manager can act as a new blogger’s first reader or editor – we know it can be daunting to put writing online. Our experience of running the Node has also helped guide the design and implementation of The Company of Biologists’ two newer community sites, preLights (preprint highlighting by early career researchers, prelights.biologists.com) and FocalPlane (Journal of Cell Science’s site devoted to imaging, focalplane.biologists.com). Like the Node, these sites embody The Company of Biologists’ motto of ‘supporting biologists, inspiring biology’.

Another way the Node serves the developmental biology community is via social media: our Twitter account (twitter.com/the_Node) is fast approaching 15,000 followers and has become a hub for developmental biology in a much more dynamic and responsive way than the blog format provides. We hope the feed serves as a resource in itself – follow us and you’ll find the latest research, discussions, beautiful images and movies, historical perspectives and job offers, and the odd groan-inducing pun.

More recently, in January 2020 we launched the Node Network (thenode.biologists.com/network/), a global database of developmental and stem cell biologists. The Network aims to make it easier for you to find people for professional purposes (reviewers, panellists or speakers, for example), and importantly can also be used with diversity in mind (members can voluntarily add information about gender, ethnicity and disability status). We strongly believe in the benefits of diversity and inclusion in science (Briscoe and Brown, 2020), and hope that the Network will help diversify conferences, reviewer pools and panels. The Network currently has 717 members from 40 countries, with new PIs being the most represented career stage. Please consider using the Network if you are struggling to find the right scientist, and do consider becoming a member if you want to increase your visibility.

Ten years in, and the numbers are good. The Node has been viewed over two million times, and we now regularly receive more than 30,000 page views per month. We are helped by a continual stream of new content: a blog post, job or event is typically uploaded every day. But as well as reflecting on the journey so far, we want to use this anniversary to think about where we’re going, and how we can continue to serve and stay relevant to the community in a changing scientific and communication environment. In April we conducted a community survey (11 years after the one that spurred the Node into being), and noises were generally positive from the respondents – most of our features were considered useful, and most of our content enjoyable to read. We also asked what kind of things readers would like to see more of and were given some great ideas to work on, like more interactive content (‘ask me anything’ posts or webinars), ‘how to’ and technical posts, historical features and pieces on the scientific career ecosystem. We are currently developing these ideas and, as ever, will need authors: if you are interested in trying out scientific writing in an informal context about any of the above (or indeed anything relevant to the community), just get in touch or register for an account.

Ten years ago, the Node was an experiment, and it really was not clear whether it would still be around a decade later. Today, the Node is a vibrant hub for researchers worldwide, with an ever-increasing readership and a host of new ideas for the future. Who knows where we’ll be in 2030?

 

References

Amsen, E., Alfred, J. and Pourquié, O. (2010). The Node: a place to discuss, debate and deliberate developmental biologyDevelopment 137, 2251. 

Briscoe, J. and Brown, K. (2020). Inclusion and diversity in developmental biology: introducing the Node NetworkDevelopment 147, dev187591

Vicente, C., Maartens, A. and Brown, K. (2017). The Node and beyond – using social media in cell and developmental biologySemin. Cell Dev. Biol. 70, 90-97.

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Engineer position in molecular and cellular biology – Lenne Lab, IBDM, Marseille, France

Posted by , on 2 July 2020

Closing Date: 15 March 2021

An engineer position in molecular and cellular biology is available starting in September 2020 in the group of Pierre-François Lenne and in collaboration at the Developmental Biology Institute of Marseille (IBDM), France. The initial appointment will be made for 1 year, with a possible extension to up to 3 years.

We are seeking a highly-motivated candidate, who will support an interdisciplinary project on cell dynamics and tissue morphogenesis.

The main tasks of the engineer will be the preparation of cell aggregates from mouse embryonic stem cells (“embryonic organoids”), and the development of cell lines expressing fluorescent reporter proteins to monitor gene expression dynamics through imaging. Specifically, the job requires expert knowledge in cell biology (cell cultures, immuno-staining), imaging (e.g. confocal microscopy) and molecular biology (cloning of large DNA fragments, routine and advanced PCR technology). Expertise in stem- cell biology is desirable.

The working language in the laboratory is English. Candidates are expected to be fluent in English.

A letter of motivation, a CV and the names of two referees should be sent to Pierre-François Lenne

Annoucement in pdf

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FocalPlane: a new microscopy community site from The Company of Biologists

Posted by , on 2 July 2020

FocalPlane is a new microscopy community site hosted by Journal of Cell Science (JCS), Development’s sister journal, and like the Node funded by our not-for-profit publisher, The Company of Biologists. Launched yesterday, it encompasses all fields in the biological sciences where they meet microscopy.

Here the FocalPlane team introduce the site:

From conversations the JCS editorial team had with the microscopy community, it was clear there was the need for a trusted, curated and centralised online meeting place to connect people, products, resources and information relating to microscopy. The idea for FocalPlane was born.

The ability to tackle ever-more-refined biological questions is improving as microscopy and image analysis become increasingly more complex and sophisticated. However, this has made it more and more difficult for non-experts to access user-friendly resources or tools tailored to their questions. Thus, there is a need for a platform for both microscope/software developers and researchers to exchange ideas and information to help the field develop and progress.

To encourage these interactions, the website includes primers on new techniques and interviews with the people developing them, technique validation and short video tutorials. We are also featuring case studies in which experts in microscopy and image analysis describe a problem that they have had, and how they went about solving it.

This is your site, so please use it! Read, post, comment, connect and feed back to us about what you like, what you don’t like, what’s missing, or what you’d like to see more of. We want to hear from you.

 

FocalPlane is supported by a distinguished Scientific Advisory Board, and will be run by Community Manager Dr Christos Kyprianou – you can read his welcome message here. Also check out Sharon Ahmad’s FocalPlane origin story. Like the Node, FocalPlane is a community site, so we encourage you to get involved – considering how fundamental microscopy is to developmental biology, we’re sure you’ll find it a useful resource.

 

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Genetics Unzipped podcast: The eyes have it – from genetics to gene therapy

Posted by , on 2 July 2020

A human eyeIn this episode, supported by the Medical Research Council, we discover how researchers are letting the light shine in, literally, by bringing discoveries about the underlying genetic faults that cause eye diseases all the way through to game-changing clinical trials of gene therapy designed to save sight.

Our stay-at-home roving reporter Georgia Mills has been speaking with sight loss charity campaigner and fundraiser Ken Reid about his experiences of living with the genetic eye condition Retinitis Pigmentosa (RP).

She also chats to researchers Chloe Stanton and Roly Megaw from the MRC Human Genetics Unit in the Institute of Genetics and Molecular Medicine at the University of Edinburgh, who are researching the genes and mechanisms underpinning the disease, and Robin Ali at King’s College London who is running clinical trials of gene therapy for inherited eye disorders.

Genetics Unzipped is the podcast from The Genetics Society. Full transcript, links and references available online at GeneticsUnzipped.com

Subscribe from Apple podcasts, Spotify, or wherever you get your podcasts.

And head over to GeneticsUnzipped.com to catch up on our extensive back catalogue.

If you enjoy the show, please do rate and review on Apple podcasts and help to spread the word on social media. And you can always send feedback and suggestions for future episodes and guests to podcast@geneticsunzipped.com Follow us on Twitter – @geneticsunzip

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Categories: Outreach, Podcast, Resources, Societies