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On women

Posted by , on 16 July 2015

I first wrote this for an anonymous blog. After a nudge, I have decided to publish it here. Parts of it have been embellished to make the point in the name of journalistic integrity. Please forgive me if I cause any offence. None is intended.

 

This is the first entry of this blog, and it will be I hope the first of many. Perhaps it will be the most important. As the name suggests, I have started this blog because I find myself more and more losing my temper with my vocation. With good reason. The first subject I shall address is one very close to my heart: women.

I am a young lecturer (as determined by the only people who apparently decide such things – funders) and have recently sat through a compulsory ‘PhD supervisor training course’ at my small but aspiring Russell Group university. This gave me reason to tell you a story about a former colleague of mine. I hope someone somewhere who cares will do something about it.

Megan (I have changed the name) is a postdoctoral scientist at a leading research institute at a big Russell Group university. I truly truly hope I am utterly wrong, but I confidently, and sadly, predict that she will leave science. She does not want to, but will be forced out.

I have a soft spot for Megan. We started as postdocs at roughly the same time. I got my PhD from Oxford from an inspirational lab, she from Cambridge from (she assures me) an inspirational lab. Obviously, it cannot be as good as my one (I know everyone else finds it impossibly infantile, but I still yell at the TV during the boat race). That aside, we worked in our postdoctoral appointments on not-to-dissimilar projects that investigated aspects of how brains develop. We both used state of the art facilities to generate novel insights blah blah blah. One of the downsides of science is that you get bored of your own propaganda. Anyone who tells you any different is either very inexperienced, very arrogant, or lying (possibly at least two of the three).

As I said, my work ended up in a decent journal and along with some smaller contributions in some smaller journals, and allowed me to land a faculty position, though I think that my potential teaching willingness in no small part contributed to this. Anyway, Megan. I mention myself because I want to make explicit the direct comparison between us that has always been implicit, at least in my mind. I just about shade Megan in teaching experience. But that is it.

Megan is a brilliant scientist. She has almost single-handedly become the driving force behind the success of a large and famous lab that has catapulted the apparently brilliant Professor at its head to fame and fortune*. His university have allowed him to drastically cut his teaching responsibilities to focus on his groundbreaking research on account of the huge amount of research income he has generated. This success has been in large part because of Megan’s efforts. And she has been rewarded too. Megan published an excellent paper in 2013 (a year before my biggest paper) in a very high profile journal (higher profile than mine). On the back of this success, she applied for and won a competitive travel fellowship that enabled her to work for three months in a super-high tech American lab to quite literally move a protein around a cell using a laser. It is as cool as it sounds**. If there is any justice in the world, she will publish this groundbreaking work (apologies for sounding like a funding organisation/government department/university dean/idiot) in a great journal and massively enhance her job prospects.

But I don’t think she will get a ‘proper job’ ie. job that isn’t a temp job like her current post. She might not even get that – it is much more cost effective to hire less qualified people and pay them less. But she has very little chance of a permanent post: she is a woman. It is as simple as that.

As I said, I recently attended a ‘how to be a PhD supervisor’ course at my university (a different one now from where Megan and I used to work). As part of this, I sat through a ‘diversity awareness’ session that made my blood boil. There was, by design, no time for questions. In this session a large, upper middle class, privately educated white man, who is a professor and reluctantly ‘leading’ on diversity, showed us a graph of male vs female biase in the scientific workforce. Apparently, there is a huge drop off in female success at the junior faculty (getting your first lectureship) and senior faculty (getting to professor) levels. Although he emphasised the latter (he is a professor after all, and so what could be more important than getting to prof?), the drop off at the former stage was larger by an order of magnitude, and we have ‘‘no idea why.’’ Blood boiling? Check.

Megan in my opinion has the potential to be a genius, actually, if I am being honest. Certainly to be a lot better than me. She generates more hypotheses than me (and most other scientists I have met), does better experiments, and performs them more rigorously, and analyses them in more intelligent ways. She publishes in better journals than I do. Most importantly, she has better ideas – the only thing that really counts in my opinion. As I said, we both have gone through the scientific career together. But I have a louder voice, and a penis (they often go together). This year, I became a father and Megan became a mother. She has no chance.

 

 

*to be fair, he is quite bright.

**apologies if you are not a molecular biologist. Just trust me. That is very, very cool.

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Resources for Developmental Biologists

Posted by , on 16 July 2015

At last week’s SDB Meeting in Utah, I attended the ‘Imaging Workshop’, which was designed to give attendees an overview of some of the imaging-based resources available to the community, and then to facilitate a free discussion among participants about the challenges – and their potential solutions – in the developmental biology imaging field. Several interesting topics were discussed and you should be hearing more about these in upcoming posts. But one thing that was clear was that many members of the community are unaware of some of the valuable online resources available to them, and it was noted that it would be useful to have a one-stop-shop where all these sites are listed.

So here’s where we can help! You may or may not have noticed that the new Node website has a Resources tab in the menu bar. At the moment, this provides you with a list of databases (mainly focussed around genetics resources for specific model organisms), as well as a separate list of developmental biology and other relevant societies. As a community site, the Node is the perfect place to host a comprehensive list of databases and resources, but I know we’re hardly scratching the surface at the moment – certainly most of the resources discussed at the Workshop aren’t currently on our list! We would therefore like to start adding to this list but we need your input on what should be included. What are your go-to sites when you’ve got a new gene and you want to start figuring out what it might do? Where do you look when you need to find out about new techniques or ways of analysing your data? What are the useful software packages you’ve found for statistics or image analysis?

Get in touch via the comments box below, via our feedback form or on social media with your suggestions for adding to our Resources list: if you can give us a brief description of the resource in question, this will help us to curate the list and to build this into something that will be a truly valuable community asset – the place to go when you don’t know where to go to find out what you want!

 

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Between Genetics and Physics

Posted by , on 15 July 2015

The predominant approach to studying development is based on genetics. In fact, some have gone so far as to argue that many researchers approach the whole problem of development as “the interplay of cell-cell signaling and transcriptional regulation” (Gerhart 2015). However, in recent years there has been increasing recognition of approaches to understanding development that are drawn from physical science. For example, Savin and colleagues (2011) highlighted a “renewed appreciation of the fact that to understand morphogenesis in three dimensions, it is necessary to combine molecular insights (genes and morphogens) with knowledge of physical processes (transport, deformation and flow) generated by growing tissues.”

This past spring, as part of a three-year initiative at the University of Minnesota entitled “Integrating Generic and Genetic Explanatory Approaches to Biological Phenomena,” a workshop was held to explore the prospects for integrating these different approaches to achieve a deeper comprehension of development. Four invited experts—Lance Davidson, Michael Levin, Claudio Stern, and Eric Wieschaus—joined several local participants and a core team composed of four biologists (Doug Erwin, Karl Niklas, Stuart Newman, Günter Wagner), four philosophers (Robert Batterman, James Griesemer, Alan Love, William Wimsatt), and a project postdoctoral researcher (Tom Stewart) for several days of focused discussion on the prospects for integrating these approaches to study and explain development. Topics of discussion ranged from experimental challenges and opportunities in particular model organisms to the place and value of computational modeling.

These discussions were guided by an organized set of readings, which is now available online. These papers might be of interest to many readers of The Node because they survey the state of research in different areas of developmental biology, describe relevant technological advances and useful experimental systems, and could provide the inspiration or scaffold for a graduate level course on the subject.

A more detailed meeting report is forthcoming, as well as a review article that details the status of current models available for combining genetic and physical approaches to different developmental questions (differentiation, morphogenesis, pattern formation) and future prospects for developmental biologists to integrate these approaches in novel ways. Judging by the lively interactions at the workshop, this will continue to be an area of developmental biology to watch over the next few years.

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2015 Gordon Conference – Developmental Biology

Posted by , on 14 July 2015

The Developmental Biology Gordon Conference is held every two years and this year it was held in the picturesque Mount Holyoke, MA, USA. This conference’s mission is to bring together people from research institutions all across the globe who are studying developmental biology which lies at the cross roads of all the Life Science, integrating investigations at molecular, cellular and tissue and organismic levels. The 2015 Gordon Conference on Developmental Biology presented the most recent, cutting-edge research in the field.

It was a great conference with a fantastic line up of speakers which kept us engaged through all days of the conference. It was a superb learning experience with wonderful interactions and discussions. The highlight of the conference were two talks by Dr. Victor Ambros and Dr. Gary Ruvkun both co-recipient of 2015 breakthrough prize for discovery of microRNAs using worm C. elegans as the model system. A predominant number of speakers (>50%) at the conference were using C. elegans as their model system and a large subsection of the research presented dealt with genomic level events many of which directly or indirectly involved microRNAs. It goes to show how much the field of microRNAs has evolved in the past couple decades and many researchers are working to understand the role of microRNAs.

All and all it was a wonderful conference. Given that it was a Developmental Biology conference, I went home still yearning for a broader exposure of different model organisms (in addition to C.elegans) and studies that span the breadth of developmental biology at the cellular, tissue and organismic levels in addition to genomic level.

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An interview with Brigid Hogan

Posted by , on 11 July 2015

This interview was first published in Development.

 

Brigid Hogan is a developmental biologist who has worked extensively on the early stages of mouse development and is now unravelling the mysteries of lung organogenesis. She is the George Barth Geller Professor and Chair of the Department of Cell Biology at Duke University Medical Center. Brigid is also the winner of the 2015 Society for Developmental Biology (SDB) Lifetime Achievement Award.

 

Brigid HoganHow did you develop an interest in biology and was there someone who inspired you?

The first person who inspired me was my grandmother. She liked gardening, and I distinctly remember her showing me how to plant seeds in a little bed that she said was my garden. I was fascinated by how these seeds would turn into flowers. When I grew older I became interested in bird watching and collecting flowers.

When I was in school I didn’t do very well in subjects like history and Latin, but I always did really well in biology. I attended an all- girls high school, but the year I reached 16 the women teachers who had taught chemistry and biology retired. The school couldn’t find any women replacements, so they hired Mr Jones. He was very interested in DNA, chromosomes and molecular biology in general, so he swept aside all the stuff we had been doing before and said we were going to do experiments, such as dog testis squashes of chromosomes. This was very exciting for me, and a great inspiration. I also joined other activities outside school. On the other side of the hill was the boys high school and Mike Ashburner, the Drosophila geneticist, attended that school. We both belonged to the Middle-Thames Natural History Society, and the society’s weekend meetings took place in areas such as Burnham Beeches woods, where Mike photographed flowers while I was interested in birds and, indeed, any natural history.

 

Both your parents were artists and you have said before that you “view embryos as a thing of beauty”. Does your artistic sensitivity influence the way that you view scientific problems?

My father died when I was really young, so it was really my mother who was the biggest influence. She had been an artist, and we had lots of books about art that we used to look at. Developmental biology didn’t quite exist while I was at university, but the papers and topics that interested me always had a visual element. I remember hearing about Drosophila genes associated with segmentation from David Ish-Horowicz when I was in Mill Hill. I would listen to his talks but didn’t really get it. It wasn’t until I went to a seminar given by Mike Akam, in which he presented some of the first in situ hybridisation patterns for Ubx, and saw his pictures of the stripes of mRNA distributions that I finally understood what it was all about. The visual input was always tremendously important for me and it still gives me enormous pleasure to look down a microscope at embryos and tissues and wonder how they develop.

 

You did your degree at the University of Cambridge, where you experienced negative attitudes from male faculty. How have attitudes towards women in science changed during your career?

Fortunately, attitudes have changed, and there is a lot of external pressure for them to change. In fact, yesterday I was talking to some Cambridge students and recounting some of the bad experiences I had as an undergraduate, and they were quite shocked. If this kind of sexual harassment happened now it would be immediately reported. In those days it was all swept under the rug; you just put up with it. I am amazed that I survived and stayed interested. It would have been terribly easy to give up, and it must have been the sheer passion for what I wanted to do that kept me going. It is a real pity because I think I might’ve been much happier if the attitudes of teachers to women students would have been different back then.

The harassment has largely gone, but there is still a long way to go. I have just been to the Wellcome Trust meeting on The Biology of Regenerative Medicines and around 85% of the oral poster presenters were young women. I don’t know what happens to them, but the number of senior women speakers was by no means the same proportion. The real problem is how to combine a career with having a family. Confidence is also an issue, to overcome all the stresses and strains during your career progression. These stresses affect both men and women, but I think women often feel more insecure and take criticism much more personally. In addition, although people are much more aware of women’s issues, there are other problems to solve. If we think it is difficult for women in science, it is even more difficult if you are an African American or Hispanic, at least in the USA where I work. There is a huge diversity problem.

 

You established yourself as a developmental biologist with work on early mouse development and organogenesis. However, this was not how you started your career. You worked on sea urchins during your postdoc and mouse teratocarcinoma cells in the early days of your lab. How did your interest in mouse embryology develop?

I have always been very interested in embryos, even as an undergraduate, and I would read a lot about developmental biology. However, in those days there weren’t any classes in cell biology or developmental biology, so I chose to do my PhD in a topic that was very exciting in Cambridge then – protein synthesis and RNA. However, when I finished my PhD I said to my advisor: “I really want to work on embryos, do you know anybody with whom I can do a postdoc?”. My advisor suggested that I worked with Paul Gross, who was studying sea urchin embryos at MIT. In the end, I didn’t find sea urchins so exciting, especially because the availability of the material was a little sporadic (during the winter you had to wait for shipments to come from California), but it was a wonderful experience being at MIT. It was so completely different to Cambridge in the UK – I remember being overawed by the size of the biology department!

Mostly for personal reasons I eventually decided to come back to the UK. I got a job as a lecturer at Sussex University but was dissatisfied there, and ended up moving to work with John Cairns at the Imperial Cancer Research Fund (as it was then) Mill Hill laboratory in London. John was hugely influential in my career because he gave me the freedom to look around and find a research topic. Initially, I started working with F9 embryonal carcinoma cells and gene expression changes as they differentiated into extraembryonic endoderm in response to retinoic acid. By this time I had two terrific postdocs, Denise Barlow and Markku Kurkinen, who brought molecular biology skills to the lab. F9 cells start making lots of extracellular matrix proteins when they differentiate, so this led us to beat big groups in Germany and the USA in the first cloning of the genes for laminin and type IV collagen. This work was very exciting, but in the end it wasn’t really developmental biology. I still hankered after the embryo, and so I started trying to isolate pre-implantation embryos. I found this really challenging on my own, so I contacted Anne McLaren at the MRC Unit for Mammalian Embryology at University College, London. Besides John Cairns, Anne was the most influential person in my career and the best possible person I could have found to help me. She was such a brilliant scientist, so encouraging and supportive. She and her colleagues, and people like Janet Rossant, Liz Robertson, Ginny Papaioannou and Allan Bradley – all of whom had grown up knowing how to manipulate embryos – were incredibly kind, supportive and generous with me. So was Gail Martin, who was working on embryonal carcinoma cells in London then. So if there is one take-home message from my career it is that it can take a long time to get to where you want to be!

 

You have been very involved in the development and teaching of techniques in mouse embryology and transgenesis. Did your interest in this develop during those early days?

In those days I would visit Anne’s lab, and people such as Mike Snow and others would answer my questions: “what medium do you use for this?; how do you do this experiment?; show me precisely how you do the dissections”. They would pull out a drawer and fumble around for a bit of paper and say “Oh, I think this may be the formula”, and I would snatch these pieces of paper and take them back with me. I gradually realised that what beginners like me needed was a handbook like Joe Sambrook’s famous cloning manual. I also thought we needed a course where experts could teach us how to collect embryos and manipulate the early post- implantation stages. I kept on mentioning this to people and everybody said it would just be too difficult, that no one would support or pay for the course. Then, when I was at Cold Spring Harbor, I was at lunch and Jim Watson sat down opposite me and just said: “What’s new?”. I realised that I needed my two-minute elevator speech to say something that would catch his attention. I told him that there were some really exciting developments in mammalian embryology and molecular biology, and that I really wanted to run a course but was being told I couldn’t do it. He just stood up and walked off and I thought “Oh, I’ve annoyed yet another person”. I finished my lunch, left the dining hall and started walking away when he ran down from his office with a piece of paper in his hands saying: “It’s all arranged, it’s all arranged! You’ll do a sabbatical here and we’ll run a course with Frank Costantini and Liz Lacy”. He had been trying to recruit them to Cold Spring Harbor because they had made the first transgenic mice in Oxford and had just started their own labs in New York. So I helped run the course, and wrote the manual, which was eventually published by Cold Spring Harbor. Frank and Liz were co-authors, and of course it included their technologies for making transgenic mice, which is what people were really excited about. Every now and again I would push a little bit of post-implantation embryo at someone and say “Don’t you think this is interesting”, and they would say “Oh yes, but I want to inject my DNA”. It took a while for the course to gradually evolve into what it is now. It moved from transgenic mice to ES cells, making chimeras and now making iPS cells and organdies.

 

Your lab is currently interested in understanding lung development. Why did you decide to focus on this organ in the last few years?

There was a short period of time when you could become interested in almost any organ system, because you would make a knockout homozygous mutant mouse and you didn’t really know what sort of phenotype you were going to get. My lab went through a stage when we were interested in many different organs and their development, because of the role of the BMPs and Fox genes that we had cloned and for which we had reporters.

But the lung has fascinated me since my early days in London. At Mill Hill we had access to about twenty different strains of mice and you could just ask for mated, timed embryos of these different strains. I looked at all of them and was fascinated by the fact that the lung branching pattern was the same. When we were working with BMP4 and FGF10 we noticed that these proteins are expressed in the developing lung, in the epithelium and mesenchyme of the growing buds. I had a brilliant student, Molly Weaver, who loved doing manipulations, cutting up buds and showing that they grew towards beads soaked in signalling factors. This work was incredibly exciting to me, and it seemed that it was opening up an important area of developmental biology: epithelial/mesenchymal interactions and organogenesis. I also ultimately focused on the lung owing to funding. I had grants from the National Institute of Child Health and Development, but they always cut their grants by 25% after you’ve got one, so it was very difficult to keep going. So I applied to the National Heart, Lung, and Blood Institute and got a grant to look at lung development. They didn’t cut the grant by 25%, so I wrote another… There were lots of interesting questions, but you can’t really focus and ask important questions about many tissues simultaneously. It is difficult to be competitive in many fields.

 

You have been involved in the past in high-level discussions of the ethics and regulations of embryology. You were the co-chair of the 1994 NIH Human Embryo Research Panel, and a member of the 2001/2 National Academies Panel on Scientific and Medical Aspects of Human Cloning. What do you think are the next big ethical challenges in the field, and what role should scientists play in these discussions?

In the ethics discussions I was involved in at the NIH my role was very much just to tell the committee the basic facts of early embryonic development. I remember explaining that if you separated an embryo into four blastomeres and put them back, you weren’t necessarily going to get four babies. I suppose I was quite good at explaining, perhaps from having taught in courses. It was a hugely interesting experience and I was deeply inspired by Anne McLaren, who had been the pioneer in being involved as a scientist in such ethical discussions.

At the moment the hot topic is undoubtedly the genetic manipulation of the human embryo by CRISPR/Cas9 technology. It is a very powerful technique, but it is far too soon to apply it to humans. A lot more basic research has to be done on possible side effects. If one of the parents carries a mutation, you don’t know which embryos are carrying the mutation. So which ones do you choose to repair? Is this necessarily better than just pre- implantation genetic diagnosis, where you keep the embryos that don’t have the mutation? You could also apply this technique to stem cell populations that could be replaced without having to change the genome of the whole human. However, this strategy has the problem of how you get these cells back into the damaged tissue. The real danger is that the promise is all blown out of proportion based upon preliminary results. The big challenge is going to be to make sure that people don’t move too fast, getting everybody’s consensus and agreeing on a course of action together.

 

Later this year you will receive the SDB Lifetime Achievement Award. Does this prize have a special significance for you?

I’m very grateful. The SDB is a great organisation and I’ve got many friends there. It gives me enormous pleasure and is a boost to keep going. It is very gratifying to feel that, in spite of all the early struggles one had, I have been very lucky in the colleagues, friends and people who helped me. This is another example of people recognising me and being nice to me.

 

What is your advice for young scientists?

You have to be passionate. That is what kept me going during the dark days of my undergraduate, PhD and early postdoc. It took quite a long time before I found the mouse embryo, Anne McLaren and the community of mammalian developmental biologists. I kept going because I just felt I wanted to work on embryos and probably because I picked up a tenacious attitude along the line. Maybe that has not necessarily always been good, since I have the reputation of being a little abrasive at times, unlike someone like Anne who was enormously diplomatic. You mustn’t be too aggressive in what you want, but you still have to be very tenacious. It is also important to find a community, a life partner and/or a group of friends who will support you and encourage you.

 

 

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Postdoctoral Position Available: Gene Regulation and Druggability of Normal and Tumor Stem Cells

Posted by , on 10 July 2015

Closing Date: 15 March 2021

Description
Postdoctoral positions are available in the Markstein Laboratory at the University of Massachusetts at Amherst. We study how stem cells respond to natural and synthetic chemicals in the environment over the course of normal development and tumor progression. We recently showed that stem cells proliferate into small tumors in response to a subset of FDA approved chemotherapeutics, highlighting the clinical importance of understanding how stem cells respond to their chemical environment. We employ Drosophila genetics, chemical screening, tumor modeling, transgenics, genomics, and confocal microscopy. To learn more about our laboratory visit: http://marksteinlab.org.

 

Qualifications

The ideal candidate will have recently completed their Ph.D. in molecular biology or a related field. Experience with Drosophila genetics and/or cell biology is highly desirable.

 

How to Apply

To apply, send a cover letter explaining your past and future research interests, plus your C.V. with contact information for three references. Email your application to Dr. Michele Markstein at mmarkstein [[at]] bio.umass.edu.

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A Day in the Life of an MBL Embryology Student – #embryo2015

Posted by , on 10 July 2015

For the second instalment of our blog from the 2015 Woods Hole Embryology course, we decided to do something a little bit different this time around, and write a “Day in the Life” style blog, to complement the excellent Day in the Life of a Model Organism series which The Node has recently been running.  Our experience here at the Embryology course is hard to put into words, but perhaps this will give you a feel for what goes on here on a day-to-day basis.

 

A typical day in the life of an MBL Embryology student:

0730: The embryology students begin to stir, as the collective gargle of 24 alarm clocks echoes through the halls of the Brick Dorm where we’re all staying. As the mass brawl to get in the shower begins, at least 4 people will be locked out of their bathroom.

0800: The embryologists slowly begin to trickle out of the Brick Dorm and take the 30 second walk over to Swope for breakfast. There will be a relatively small group of early risers present who were victorious in the battle to get in the shower. We fight the hoards of other students to get one of the big tables, as we always try and sit together – including coursemates, teaching assistants and faculty. The conversation frequently falls to either science or observations about the quality of the food. Some mornings the conversations revolve around reconstructing the events of the previous night and figuring out who stayed up the latest (or who went to bed at all). Before we head out for lecture, we all make sure to fill up our coffee cups – we’re going to need it.

0900: Another 30 second walk and we’ve arrived at the Speck Auditorium for the morning lecture. Richard and Alejandro alternate introducing the speakers. When Richard introduces someone, they are often subjected to an interview that includes asking the names and occupations of their parents, a la James Lipton. The speaker uses a repurposed fishing rod as a pointer. The first talk is usually a general background to an organism, a concept, or a methodological approach.

0910: At least one oversleeper rushes in.

0930: The latecomer can be witnessed engaging in the “head-drop behavior” so famed among MBL students by the fourth week of the course.

1000: More coffee is required immediately. A core group of caffeinistas heads off to Pie in the Sky, the best coffee place in town. Inevitably, we get stuck on the wrong side of the drawbridge and arrive for the second lecture 10 minutes late. Everyone else congregates outside Rowe to soak up a bit of sunshine.

1015: The second lecture, a research talk, begins.

1100: After the lectures, we walk back to the Loeb Laboratory and the infamous “Sweat Box”. The course students now have about 60-90 minutes to roast the speaker with questions, or to stimulate further discussion about the material they just learned. Certain Sweat Box sessions from years gone by are still infamous among the course alumni.

1230: Lunch at Swope. Some days, a few of us grab sandwiches and head to the beach for a quick swim. Everyone refills their coffee cups.

1330: Head to the lab to finish up last week’s experiments, only to discover that transferring immunostained mouse embryos from BABB back to PBS leaves you with mouse-shaped salt crystals. A new discovery?!?

1400: A new module begins. We are introduced to a new animal system via a short lecture and technical demonstrations on a variety of complex manipulations, dissections and experimental approaches. With little more than a list of available reagents and a vague idea of a hypothesis, most of us jump right in.

1500: I can do this.

1510: I can’t do this.

1530: Realize that the person who invented the procedure you’re attempting is standing behind you and that they can probably give you some pretty good advice.

1600: I can do thi… no wait, I squashed it. It’s dead. Ah well, twelfth time’s the charm!

1700: Excitement as someone shouts “Hey, come see this! It’s really cool!”

1800: Shane, our trusty CA and softball coach, announces a last minute softball practice before dinner. If you’re not in the middle of an experiment (or even if you are), grab a mitt and head to the field.

1900: Head to dinner at Swope. Alternatively, decide you can’t take one more meal at Swope and walk to Jimmy’s for a buffalo chicken tender sub and cheese fries. Make definite plans to go for a run the next morning. You can’t accept it yet, but these plans are beyond doomed.

2000: Back to Lowe for a chalk talk by the module TAs.

2100: Can you believe it’s 9 PM already?!

2130: Realize that you’re falling asleep. Maybe coffee and/or popcorn and/or some luminous American snacks from the breakroom will help. While in the breakroom, end up making an elaborate experimental plan with a few other students. Maybe it’s a crazy plan – we can’t tell anymore – but if we work together we can give it a shot!

2230: Start dissecting and fixing embryos.

2330: Realize that you never signed up for a confocal to image your immunostained arthropods. Thankfully Nipam Patel is on it – he’s booked the next 4 hours. Head over to Lillie with Nipam and the rest of your group. Bring coffee, you might be here a while.

0015: Start running a confocal stack. Realize it will take about 30 minutes to run, so you may as well run to the Kidd before last call for a pitcher of beer with the other students, TAs and faculty who are surely already there hanging out on the deck.

0100: Back to the confocal. The immunostaining worked and we have a beautiful image! (Or more accurately, the immuno failed, but the nuclei stained with DAPI look amazing!)

0130: Sign off of the confocal and head back to the lab to put your samples on the fridge. It’s only 1:30AM, you’re going to get a good night sleep tonight!

0132: On your way from the lab to the dorm, walk by the breakroom. I guess you could just pop in for a moment to say hello…

0200: Eat some cheese puffs out of a wine glass (it’s the only bowl you can find). Engage in an intense debate about the design of this year’s course t-shirt.

0300: After a long, productive day, it’s finally time to hit the hay. You’ve got just enough energy left to brush your teeth and crawl into the top bunk. Your brain is full, you’re completely exhausted, but every moment was worth it. Even the BABB thing…

0857: Wake up, realize what time it is, sprint to lecture and get ready to do it all again.

As the days/weeks progress, we’re getting increasingly tired (and slightly crazier). It feels like our first course dinner was more than a year ago… even watching the fireworks on the 4th of July feels like it was at least a month ago! At the same time, we cannot believe the course is almost over. We’ve all become so close over the past few weeks, we can’t even begin to process the thought of saying good-bye to each other. Where else are we going to find a bunch of people excited to be running 5 experiments at the same time? How are we going to function back home when there’s no one else around that thinks starting a new experiment at 2am is a good idea?
One more week to go. Exhausted, but not even close to getting tired of being here.

Shun Sogabe, Elena Boer, Joe Hanly

Follow our progress at #embryo2015

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Postdoctoral Position in Carnegie Institution, Department of Embryology (USA)

Posted by , on 7 July 2015

Closing Date: 15 March 2021

Job description: A NIH-funded postdoctoral position for a highly self-motivated scientist is available in the ZZ lab at Carnegie Institution for Science, Department of Embryology. Research in our lab focuses on the impact of transposons during animal development, disease, and aging processes. We build tools to quantify the transposon activities and uncover the mechanisms that control transposons. The candidate will join a young and highly energetic family. Current research directions in our lab include:

  1. Studying piRNA biogenesis and transposon silencing in animal (mouse and fly) germline.
  2. Building transposition reporter system to probe transposition events.
  3. Uncovering transposon control mechanisms in somatic cells.
  4. Establishing genome-wide sequencing method to quantify DNA breaks.

Job requirements: Applicants should be creative individuals who are willing to ask big questions and challenge established dogmas.

Please email your C.V. and contact information of at least three references to Zhao Zhang (zhang[at]ciwemb.edu). For more information, please visit: https://emb.carnegiescience.edu/labs/zhao-zhang

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Histopathology Technician

Posted by , on 6 July 2015

Closing Date: 15 March 2021

Department/Location: Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, UK

Salary: £27,057-£32,277

Reference: PS06462

Closing date: 30 July 2015

Fixed-term: The funds for this post are available for 12 months in the first instance.

The Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute draws together outstanding researchers from 25 stem cell laboratories in Cambridge to form a world-leading centre for stem cell biology and medicine. Scientists in the Institute collaborate to generate new knowledge and understanding of the biology of stem cells and provide the foundation for new medical treatments.

Applications are invited from enthusiastic, self-motivated, adaptable histopathology technician, to provide a high quality histopathology research resource, which processes and evaluates human and mouse tissues including embryos for the Institute’s research staff, researchers within the University and organisations outside the University.

You will have worked in a histopathology/immunohistochemistry research laboratory in an academic or industry setting and be a medical laboratory scientist with a degree or equivalent in biological or medical science. You must have a proven background with sound practical knowledge and experience in histopathological techniques and immunohistochemistry and experience with in situ hybridisation would be desirable. Experience of tissue microarrays would be an asset.

The successful candidate will be responsible for the day-to-day organisation of the service; as lead histologist you will allocate work to the junior histology staff, monitoring the quality of the work produced. You should have demonstrable experience of producing sections from frozen and paraffin wax materials. Many research projects involve experimental tumour models that require histological and/or cytological processing, including immuno-histochemistry, in situ hybridisation, enzyme histochemistry and special stains.

You will advise service users on all aspects of histological techniques, develop and improve existing protocols to suit the service users’ requirements, and assist with the preliminary interpretation of results. You will be responsible for training users, and technical staff in histological techniques. You will be responsible for ensuring that the Institute complies with the Human Tissue Act requirements.

You should have excellent interpersonal and communication skills, a professional attitude, be able to work as part of a team and have a pleasant and helpful manner, an eye for detail and able to be patient, both with users and with the work undertaken.

You must be able to work independently and efficiently within a team and be able to prioritise the workload. Technical and/or line managerial experience would be desirable.

Be familiar with the standard Microsoft office package and have experience of image handling/output software and experience with database entry portals.

To apply online for this vacancy and to view further information about the role, please visit: http://www.jobs.cam.ac.uk/job/7417. This will take you to the role on the University’s Job Opportunities pages. There you will need to click on the ‘Apply online’ button and register an account with the University’s Web Recruitment System (if you have not already) and log in before completing the online application form.

The closing date for all applications is Thursday 30 July 2015.

Informal enquiries about the post are also welcome via email on cscrjobs@cscr.cam.ac.uk.

Interviews will be held towards the middle of August 2015. If you have not been invited for interview by 10 August 2015, you have not been successful on this occasion.

Please quote reference PS06462 on your application and in any correspondence about this vacancy.

The University values diversity and is committed to equality of opportunity.

The University has a responsibility to ensure that all employees are eligible to live and work in the UK.

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Research Assistant (Chalut Lab) – Part-Time

Posted by , on 6 July 2015

Closing Date: 15 March 2021

Department/Location: Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, UK

Salary: £24,775-£28,695 pro rata

Reference: PS06457

Closing date: 16 July 2015

Fixed-term: The funds for this post are available until 31 August 2016 in the first instance.

The Wellcome Trust – Medical Research Council Stem Cell Institute draws together outstanding researchers from 25 stem cell laboratories in Cambridge to form a world-leading centre for stem cell biology and medicine. Scientists in the Institute collaborate to generate new knowledge and understanding of the biology of stem cells and provide the foundation for new medical treatments.

This post will be based at the Stem Cell Institute in the City Centre of Cambridge. Applications are invited for the position of a half-time research assistant in the laboratory of Dr. Kevin Chalut’s to study embryonic stem cell biophysics using hydrogel technology. This project is aimed towards potential commercialisation.

The main duties will encompass a wide range of techniques and will include: preparation of novel cell culture substrates using a custom-made design; embryonic stem cell culture work; and preparation of new cell lines. Molecular biology techniques such as Western blotting, cloning and qPCR will also be used. Practical experience working with mammalian cell culture and qPCR is essential. Experience with chemistry and/or bioengineering would be advantageous. Duties could also include laboratory management tasks.

The ideal candidate should have considerable laboratory experience, and be interested in research at the interface of Physics and Stem Cell Biology. Good communication, organisational skills are essential, as well as the ability to work independently and as part of a team. The post will require a flexible approach to working hours.

You should ideally have been awarded a MSc degree or equivalent and have at least one year of basic laboratory experience, but exceptional candidates with a BSc degree may be considered.

The position will be under the direct supervision of Dr. Chibeza Agley.

To apply online for this vacancy and to view further information about the role, please visit: http://www.jobs.cam.ac.uk/job/7412. This will take you to the role on the University’s Job Opportunities pages. There you will need to click on the ‘Apply online’ button and register an account with the University’s Web Recruitment System (if you have not already) and log in before completing the online application form.

The closing date for all applications is Thursday 16 July 2015.

Please upload your Curriculum Vitae (CV) and a covering letter in the Upload section of the online application to supplement your application. If you upload any additional documents which have not been requested, we will not be able to consider these as part of your application.

Informal enquiries about the post are also welcome via email on cscrjobs@cscr.cam.ac.uk.

Interviews will be held at the end of July or the beginning of August 2015. If you have not been invited for interview by 24 July 2015, you have not been successful on this occasion.

Please quote reference PS06457 on your application and in any correspondence about this vacancy.

The University values diversity and is committed to equality of opportunity.

The University has a responsibility to ensure that all employees are eligible to live and work in the UK.

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Categories: Jobs