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Research Associate (Chalut and Franklin Labs)

Posted by , on 6 July 2015

Closing Date: 15 March 2021

Department/Location: Wellcome Trust – Medical Research Council Cambridge Stem Cell Institute, University of Cambridge, UK

Salary: £28,695-£37,394

Reference: PS05553

Closing date: 16 July 2015

Fixed-term: The funds for this post are available for 3 years in the first instance.

The Wellcome Trust-Medical Research Council Cambridge Stem Cell Institute (SCI) comprises 200 researchers spanning fundamental science through to clinical applications (http://www.stemcells.cam.ac.uk/). Our goal is to advance disease modelling, drug discovery and regenerative medicine through understanding the mechanisms that control stem cell fate.

We are seeking an enthusiastic and highly motivated person to join the SCI to be co-supervised by Dr. Kevin Chalut and Prof. Robin Franklin. This project, which is also a collaboration with Dr. Ulrich Keyser in the Department of Physics, will investigate the role of the mechanical and material properties of the cell nucleus in regulating cell fate decisions. This BBSRC-funded project, continues our recently published work (Pagliara, et al., Nature Materials, 2014), which outlined the role of force-induced changes in nuclear shape and volume during stem cell differentiation.

We are seeking motivated researcher with a proven track record of successful research. The candidate must have a PhD in Physics or Biology or at the interface. It is essential that the candidate is driven to use principles of physics to better biological questions. The successful applicant should have experience in molecular biology techniques, cell culture and advanced microscopy. It would be beneficial for the candidate to have experience in biophysical techniques such as microfabrication and/or atomic force microscopy. In this collaborative project the candidate will need to show their ability to work within a highly interdisciplinary team.

To apply online for this vacancy and to view further information about the role, please visit: http://www.jobs.cam.ac.uk/job/6405. This will take you to the role on the University’s Job Opportunities pages. There you will need to click on the ‘Apply online’ button and register an account with the University’s Web Recruitment System (if you have not already) and log in before completing the online application form.

The closing date for all applications is Thursday 16 July 2015.

Please upload your Curriculum Vitae (CV) and a covering letter in the Upload section of the online application to supplement your application. If you upload any additional documents which have not been requested, we will not be able to consider these as part of your application.

Informal enquiries about the post are also welcome via email on cscrjobs@cscr.cam.ac.uk.

Interviews will be held towards the end of July or beginning of August 2015. If you have not been invited for interview by 24 July 2015, you have not been successful on this occasion.

Please quote reference PS05553 on your application and in any correspondence about this vacancy.

The University values diversity and is committed to equality of opportunity.

The University has a responsibility to ensure that all employees are eligible to live and work in the UK.

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Celebrate the Node’s birthday at the SDB meeting!

Posted by , on 6 July 2015

This week will see the Society for Developmental Biology (SDB) meeting take place in Snowbird, in Utah, and we will be there! Come by booth nr 12 (Rendezvous room) if you would like to say hello and chat about the Node!

We also need your help:

  • We would love to feature a meeting report about this conference , so if you would like to blog for the Node about it get in touch.
  • We will be doing some filming at the conference, and would like to record a few of you telling us what you think about the Node. Do get in touch or visit us at the stand if you would like to get involved!

Finally, and as you have probably already gathered, this year we are celebrating our 5th anniversary and we want to mark the occasion. So come by booth 12 on Saturday (11th July) at 8 p.m. for cake and drinks. We look forward to celebrating the Node’s birthday with you!

If you are not attending then follow us on twitter. If the internet connection is good we will be tweeting from the meeting using the hashtag #2015SDB.

 

Node birthday poster2

 

 

 

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Categories: News

The people who make the Node happen

Posted by , on 3 July 2015

This year we are celebrating the Node’s 5th anniversary, and this wouldn’t have been possible without the help of many people. Our biggest thank you goes to you, our community! The Node is only a lively, dynamic website because you read, post, comment and share the word with your colleagues.

Another big thanks goes to The Company of Biologists, the not-for-profit publisher behind the Node, as well as the editors and staff at Development for their contributions. We’re also hugely grateful to Jane Alfred, who was the Executive Editor at Development when the project was launched, and Eva Amsen, the first Node community manager. It’s thanks to their efforts and vision that the Node exists!

Many hundred people have contributed to the Node in the last 5 years, but a few authors stand out for their long engagement with the Node, and the number of posts they’ve contributed. As a special thanks, here are the Node’s top contributors (other than the internal staff) in the last 5 years!

 

Natascha Bushati

Natascha smaller

 

“Being a blogger on the Node has given me a great opportunity to develop my science writing skills and gain experience in communicating science while still doing research as a postdoc in the lab. I’m convinced that this experience also set me apart from other applicants when I applied for my first editorial jobs.”

 

Natascha first contributed to the Node in 2010, when she was doing a postdoc with James Briscoe at the NIMR. She reported from meetings, interviewed scientists, wrote about papers and considered alternative careers. She has now moved on to a career in publishing, and is currently an Associate Editor at Nature Cell Biology.

 

 

Thomas Butts

Thomas photo

 

“A great place to write (and occasionally rant) for its own sake, but which has useful and totally unpredictable outcomes too (like book offers). A blog version of what science should be.”

 

Thomas has contributed to the Node since 2011, when he was a postdoc with Richard Wingate at King’s College London. Over the years Thomas has shared his thoughts on a variety of topics, from specific research papers to the state of science funding. He now has his own lab at Queen Mary University of London.

 

 

Kim Cooper

KCooper

 

“I always get excited to see posts on the Node from students and postdocs, especially the summer blog from the Woods Hole Embryology Course. As an alumnus of that course, it’s fun to see the lineage continue and to hear first hand how the amazing experience impacts each class of participants.”

 

Kim started posting on the Node in 2010, when she was a postdoc with Cliff Tabin at Harvard Medical School. At that time she was establishing jerboas as a model to study limb development. Since then she has started her own lab at UC San Diego.

 

 

Gary MacDowell

Gary

 

“I first dipped my toe into the pool of blogging with the Node, and it has helped me to both improve my writing and communicate about frogs, developmental biology and science in general!”

 

Gary has written about a variety of topics over the years, from posts about Xenopus research, to discussions on the different issues with the current scientific system and, more recently, advertising the Young Embryologists Network USA meetings which he organises. In his early days as a Node blogger he was a PhD student at the University of Cambridge with Anna Philpott, but he is now a postdoc with Michael Levin at Tufts University.’

 

 

Megan Wilson

M Wilson

 

“As a lecturer and researcher in Developmental Biology, the Node is a fantastic resource, not only for information about some of the latest research highlights but also education resources such as a “day in the life of a (insert your favourite model animal) lab” and outreach activities.“

 

Megan first started writing for the Node in 2013, after hearing about it at the ISDB meeting in Mexico. She has her own lab in Otago, and her posts have kept the Node community up to date with some of the developmental biology research and activities going on in New Zealand.

 

 

EuroStemCell bloggers

The Node has collaborated with EuroStemCell for several years. Every month a post about a stem cell image published in a recent paper is highlighted on both EuroStemCell and on the Node. We would like to thank Erin Campbell and Christèle Gonneau, the two bloggers who have participated in this collaboration:

Erin Campbell
Erin Campbell

Christèle Gonneau
Christèle Gonneau

 

 

 

 

 

 

 

 

 

 

 

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Categories: News

Funded places still available for the workshop ‘Transgenerational Epigenetic Inheritance’!

Posted by , on 2 July 2015

 

Transgenerational epigenetics workshop new poster

For more information click here or the image!

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EuroStemCell Newsletter June 2015: Stockholm, stem cells and summer

Posted by , on 2 July 2015

ISSCR_15_0165This month’s newsletter has a focus on the recent annual meeting of the International Society for Stem Cell Research, which was held in Stockholm at the end of June. If you weren’t able to be there, we have lots you can catch up on here. At the ISSCR, EuroStemCell discovered that they have recently published draft guidelines for stem cell research and clinical translation and are inviting comments on these before producing a final version. Please consider taking participating in this. Also in this newsletter, we report on the opening of a dynamic new multidisciplinary institute at the University of Copenhagen and profile another interview with EuroStemCell partner, Austin Smith.

Thanks, as always, for reading and keeping in touch, and for sharing your stories, views and expertise. If you’re interested in getting involved, have comments or suggestions, or just want to say hello, get in touch via Twitter, Facebook, or using our contact form.

We wish you a pleasant summer!

Read the EuroStemCell June 2015 newsletter here

 

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5 years, 5 posts- celebrating the Node’s 5th anniversary!

Posted by , on 2 July 2015

Happy birthday to us! It has been 5 years since the Node was first launched, and we have come a long way. Over the last 5 years, over 1,500 posts have been published, almost as many users have registered and we can now boast over 5,000 visitors a month!

 

Node 5th anniversary 2

 

The only proper way to celebrate a birthday is by having a party. If you are attending the coming Society for Developmental Biology meeting, please join us on Saturday the 11th of July at 8 p.m. at the Company of Biologists stand (nr 12, Rendezvous Room). There will be cake and drinks and it would be great to celebrate this occasion with you!

During our history we have featured so many interesting posts that is difficult to know which ones to highlight. We had series about alternative careers, outreach and model organisms. We have highlighted hundreds of papers, meetings  and discussed so many issues. To mark our 5 years running we decided to highlight our 5 most read, highest rated and most commented posts. You will notice one obvious omission from these lists. Our cover competitions have always been so popular that if we included them in a top 5 list we couldn’t highlight anything else!

We hope that you enjoy this journey through some of the most popular posts on the Node!

 

 

Top 5 most viewed posts

 

The Node went viral on twitter in 2013, when our Storify of the famous #overlyhonestmethods hashtag tweets was retweeted 789 times!

 

Back in the early days of the Node our then community manager Eva highlighted the beautiful animations of the intestinal crypt that accompany the talks of stem cell biologist Hans Clevers.

 

++DNA_9bx

Since late 2013 we have been running an outreach series, highlighting interesting outreach projects as well as sharing easy activities that anyone can use. Katie Howe participated in this series with a step-by-step guide to extracting DNA from kiwis.

 

Over the years we have reposted selected articles from Development. In 2014 we reposted this Spotlight article which argues that, in light of the availability of new genome editing techniques, the use of morpholinos in zebrafish may be obsolete. This post generated a lot of discussion!

 

One of our earliest posts, this contribution by Shelley Edmunds explains how you can use modelling clay to teach undergraduates about embryology concepts, including detailed photos of how to make your own 4 week old human embryo!

Completed embryo model

 

Top 5 most liked posts

 

In 2011, Kara contributed to our alternative careers series by writing about how she had left the bench to become an editor at Cell. 2 years later she wrote on the Node about how she had returned to academia to become an assistant professor, showing that no career path is set in stone and that you have the freedom to try new things and find what you really enjoy doing!

 

Thomas Butts doesn’t hold back when stating his opinions on the Node, and this post was no exception. Here he shares his thoughts on what is wrong with UK Biology research in particular, and with the field more generally.

 

2012 saw the launch of a Node essay competition, which proved very popular. This essay by Máté Varga was one of the short listed essays up for voting, and discusses a not so far away future of artificially altered development.

 

Alejandro Alvarado photo 3

In this literary piece, Ewart tells the journey of pluripotency from the perspective of a cell.

 

Over the years we have featured many interviews with developmental biologists. Back in 2013 we met Alejandro Sanchez Alvarado, who studies regeneration in planarians and is one of the directors of the Woods Hole Embryology course.

 

 

Top 5 commented posts

 

An editorial by Jordan Raff, editor-in-chief of Biology Open, discussed the issues with the current publishing system and why it is changing.

 

In 2011 the Node paired up with BenchFly to create a group meeting bingo for developmental biologists, and several of you suggested the best words to feature in it. Unfortunately 4 years is a long time on the internet and the bingo card is no longer available online!

 

Several of you shared your thoughts on whether there are too many postdocs and PhD students in the current scientific system, or whether the expectation that they will have their own labs is the real issue.

 

In 2010, changes in the way postdocs were funded in Canada triggered a discussion on whether this was a positive or negative change.

 

Back in 2010, Heather shared her thoughts on how she keeps track of primers used in her lab, and asked the community for input.

 

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Categories: News

An interview with Austin Smith

Posted by , on 2 July 2015

This interview was first published in Development.

 

Austin Smith is a stem cell and developmental biologist, who has dedicated his career to the study of pluripotency, stem cell renewal and differentiation. He is currently the Director of the Wellcome Trust MRC Cambridge Stem Cell Institute at the University of Cambridge, UK. We met him there to discuss his research and interests, as well as his role as an editor for Development.

 

DEV2227How did you first become interested in biology? Was there someone who inspired you?

I had a really good biology teacher in school. Back then, he recommended a book by Steven Rose on biochemistry which seemed really interesting, so that is what I chose to do at university, but then I found it mostly boring! Developmental biology was what I found interesting, in particular the concept of pluripotency, which I first heard about in the lectures of Chris Graham. When I finished my degree, I still thought that understanding pluripotency was the most interesting problem, and if I had a chance to do a PhD that is what I would focus on. Embryonic stem cells (ESCs) had just been derived then, so I looked for labs that studied ESCs. And that is what I have worked on ever since!

 

Why does understanding pluripotency fascinate you?

Pluripotency is interesting in the same way that development is interesting. It is about understanding how tissue complexity develops from a single cell. But the thing that is really enticing, and that I found stunning when I first heard about it, is that these ESCs grow in a dish and retain pluripotency. At that time, it seemed to me that we could use these cells to understand exactly how embryos develop, to dissect development in a way that you couldn’t do in an embryo, and understand how the different cell lineages and cell types were made. Of course, that was a ridiculously naïve idea, but that particular question was for me more interesting than understanding morphogenesis and pattern formation in embryos. Cells in a dish give you the opportunity to control things, or at least that is how it seemed to me then. Actually, we are still fighting to do that properly, as it turns out to be much more complex, and therefore much more interesting, than I thought at that time.

 

So you are primarily interested in pluripotency from a developmental perspective, rather than its medical applications?

During the first ten years of my research life, while I was a PhD student, a postdoc and then initially running my own lab, everything was in the mouse. No one was talking about human ESCs (hESCs) and it was actually almost taboo. Research was purely curiosity driven, and in general I think that is how it should be for a young scientist. However, as we began to get a better hold on ESCs it became inescapable that we should try to make hESCs. Mice are great because you can do experiments with them, but ultimately we are not interested in understanding a mouse. Of course, we want to know about the diversity of the natural kingdom and of life in general, but fundamentally we want to understand humans, if we can. But you have to have an experimental system! So the motivation for moving into hESCs was directly linked to and emanates from my original interest in pluripotency, but extends it to the most relevant species. Of course, hESCs can have medical applications and, as I become more experienced, I feel some obligation to be involved in promoting this. But it is not what drives my science. The primary driver for me is just a fundamental interest in this remarkable phenomenon of pluripotency.

I am also interested in how pluripotent cells in a dish are related to the cells in the animal. This is why we collaborate with Jenny Nichols, who works on the early embryo, and that dynamic works very well.

 

What are the next questions that you want your lab to tackle?

At the moment, there is a lot of controversy and uncertainty in the hESC field. I think we are now close to having what I would describe as an authentic, so-called naïve hESC, although this is still a matter of significant debate. I think it is essential for the field to try and clarify this issue over the next year or two, since it has become quite heated and because, from my perspective, it is fundamentally important.

Many people working in the human pluripotency field are not really interested in basic biology, they are interested in applications. This is absolutely fine, but it should not obscure the value in understanding the underlying fundamental biology. A really interesting question that we are trying to answer is the extent to which pluripotency is generic across mammals and whether there are marked species differences. I’m hoping we have the opportunity to study the progression through pluripotency towards lineage specification in humans. It is likely to be quite different from the mouse, but how different is completely unknown at this point. Also, if we really have naïve cells, can we work out how to propagate and differentiate them robustly, and will they be more reliable than the cells currently being used? But the thing I’m most interested in is whether we can explore how these cells begin to become specified. We have done quite a lot of work on this in mouse ESCs, and many people have looked in early mouse embryos, but everything happens so fast that it is really difficult to delineate the causal sequence of events. We speculate that, in humans, it might be easier to pull things apart because the time scale is longer. So, whereas up until now the lab has mostly been doing mouse work with the human work in the background, this is finally going to change. I have been trying to do this for a long time, but until we had the right cell (the naïve hESC) there was no point. Now, I think we have, or very soon will have, the right cell.

 

Whereas the stem cell field is now a busy field, this was not always the case, and you were one of the few people who originally applied to work with ESCs in the UK. Do you feel like a pioneer, and how has the field changed since the beginning of your career?

The pluripotency field actually shrank, almost disappeared, in the late 1980s, early 1990s. My lab in Edinburgh may have been the only lab in the UK studying pluripotency at the time. When Hitoshi Niwa came to my lab and I asked him why he wanted to work with me, an unknown junior group leader, he said “because you are the only person working on pluripotency”. Whereas now the field has just grown out of all proportion and there are frankly far too many people! We have had ESCs since 1981, but people just used them for gene targeting. The developmental biology community found these cells quite difficult to work with: the dream that you could just put them in factor x and they would all become one cell type, e.g. muscle, did not pan out, so most people just gave up on them. The work that we and Hans Schöler did with Oct4 really demonstrated that through the ESC system you could find a central factor that was relevant in the pluripotent cells of the embryo. I think this awoke interest in the basic biology of pluripotency. Then hESCs came along and that provoked all kinds of controversy and politics, but it also unleashed funding streams. So a lot of people were drawn into the field.

ESCs and stem cell biology used to be considered a marginal branch of developmental biology that most developmental biologists looked down their noses at because it was in vitro. Now, we have an equally unbalanced situation in which there is a huge stem cell biology community that unfairly looks down its nose at developmental biology, not realizing that there are things they need to learn from it. I am surprised at this but my lab is still relatively rare in having a strong foot in both camps. Many people are very firmly in one or the other.

 

As you say, the stem cell field is moving at a vertiginous speed. Do you feel that this puts particular pressure on people to publish, and if so, what do you think are the potential consequences of this?

The field is not really moving that fast. The publications are coming fast but our understanding of the big questions it is still slow. There is just more noise. More information doesn’t always translate into more knowledge, and certainly not into more understanding. This is a problem that we have in academic research now. People have to publish to survive, never mind to progress, but the real value of each publication unit is diminishing. There is huge pressure and incentives, and not just on young scientists, to publish in the fashion journals and therefore there is temptation to overclaim, to embroider.

The stem cell field has grown so rapidly that there are new developments coming up all the time. It is challenging for the community generally, and particularly for journal editors and reviewers, to really be able to evaluate them, especially if they are cross-disciplinary. It is impossible to be on top of the whole field and this is not helped by seeing completely discordant claims in the literature all the time.

 

In the past few years, several high-profile ethics issues have brought the stem cell field under scrutiny, including discussion in post-publication peer review forums such as PubPeer, where you have yourself engaged with critiques of your work. Do you think that post-publication discussions are useful for the scientific community?

In contrast to some of my colleagues, who have a rather disdainful approach to PubPeer, I think it is valuable. It is very irritating to have anonymous and non-scientific smears made against your papers, but in the end they are just noise. PubPeer is very useful when issues of falsification and fabrication are identified. Within the community we have a problem of people who cheat, and the incentive and pressure to do so is always there. We need mechanisms of identifying those people and holding them to account. Obviously, there are flaws with PubPeer, but it is one such mechanism that seems actually to be quite effective.

 

You have also been an editor for Development for the last nine years. How has your experience as an editor been?

Initially, I found it really quite difficult. I was recruited by Jim Smith (Development‘s previous Editor-in-Chief) as a stem cell editor, but actually very few stem cells papers were submitted in those days. Stem cell biologists rightly had the view that developmental biologists looked down their noses at them, and would reject their papers. Sometimes the developmental biologists were right to do that and the papers weren’t of the right standard, but it led to an unfortunate separation between the two communities. That meant that, initially, I was handling many general developmental biology papers, which I wasn’t always the best-equipped to assess or identify good reviewers for! But the reason why I agreed to become an editor was to attract more stem cell papers to the journal, and to make sure that the papers that were published were of good quality. I would still like to see more stem cell papers submitted, but now I get more papers in my area of expertise, and that is quite rewarding because I feel that I can have some positive influence in keeping the standards of the journal high. I hope that we are seen as a venue that publishes quality papers in both stem cell biology and in developmental biology, and particularly papers that are at the interface. What is actually quite nice about being an editor for Development is that generally the reviewers try to be constructive and try to improve the papers. A lot of the papers that I am involved with will go through two rounds of revision but everyone is really working together to make the paper as good as it can be. I do have to reject editorially a lot of papers but I think there is no point wasting authors’ or reviewers’ time by sending a paper out to review that is just not at the right level for the journal.

 

Is there any particular type of paper, or particular topics, that you would like to see more of in Development?

I would like the journal to publish more papers on adult tissue maintenance and repair. The plasticity of adult stem and progenitor cells in tissues like the intestine, the lung and so on is a really exciting area at the moment. I think Development is missing out on some of those stories, and they are clearly relevant to the developmental biology community. Another related area is regenerative biology, not just in model organisms that are traditionally associated with regeneration research but also in mammals. I think that might be an area that is bubbling under at the moment.

 

You are also the Director of the Wellcome Trust MRC Stem Cell Institute in Cambridge, and within this role you have been supportive of introducing PhD students at your institute to alternative careers during their training. Why and how have you set about to do this?

Part of my role is to make it clear to students and postdocs that they are licensed to explore alternative careers, but the best way is to let them do it themselves. The important point is to send a clear message from the top that you are not failing, and will not be written off, because you are looking at other careers. We are failing our people if we don’t make sure that they are equipped to be able to contribute to society when they leave the lab. Of course, a measure of a successful lab is that some of your people have progressed within academic research, but it is the simple reality that many of them are going to have to go into other careers. Some of them will go on to be influential in policy, public engagement or industry.

A few years ago, when we were interviewing for PhD studentships, one of the questions we asked the candidates was what their career aspirations were. One of the students was honest enough to say that they wanted to go into industry. One of my colleagues immediately afterwards said “well, we are not taking this person, what are we here for?” I found this quite shocking, but then I had to admit that, five years earlier, it is also the position I would have had. But it shows some clarity for someone to come in and say “ultimately I see myself working in industry” and they shouldn’t be negatively scored for that. There is a culture change and if you are in a leadership position you can either facilitate it or stand against it. Of course, you want to get the best people. But then you have to serve those people, in their interest and not just in your own.

 

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This month on the Node- June 2015

Posted by , on 1 July 2015

Here are some of the highlights of the last month!

 

Research:

  • Figure2Steve told the tale of how it became an established fact that human sex ratio at conception is male biased… a cautionary tale on the conception of scientific ‘facts’.
  • Kate wrote about her lab’s new paper in Neuron, examining how the micro circuitry of the cortical column, the basic functional unit of the cortex, is established.
  • What is the relationship between senescence and regeneration? Max writes about her paper in eLife.
  • MorphoGraphX is a new software that allows the analysis of curved surface areas from 3D live-imaged confocal datasets. Anne-Lise posted about how it was developed and its applications.
  • Cat Lau wrote on the Node about her MSc research examining how stress affects adult neurogenesis.
  • And how do biolectric gradients affect ectopic innervation? Mike Levin discusses some recent work from his lab.

 

Careers:

  • Are you a postdoc? Ever wanted to organise a workshop? The Company of Biologists is giving you the chance!
  • And what career opportunities are out there for graduate students? This was the topic of a recent careers event at Washington University in St Louis.

 

Students and invited guests mingle at the Early Career Transitions Symposium at Washington University in St. Louis the evening of June 3, 2015.

 

 

Also on the Node:

  • Elena, Shu and Joe wrote a great report from this year’s Woods Hole Embryology course, an intense course where students study a plethora of organisms with state of the art of technology… and get to wear a silly hat!
  • What role should scholarly societies play? Is an annual meeting enough or is there more that they do/should be doing? Share your thoughts with June’s question of the month!
  • And this month we reposted interviews with two prominent stem cell researchers: Deepak  Srivastava and Rudolf Jaenisch, both originally published in Development.

 

 

Happy Reading!

 

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Categories: Highlights

A new look… but still the same Node!

Posted by , on 1 July 2015

As you may have noticed, the Node is looking a little different today!

This year we are celebrating our 5th anniversary, and 5 years is a long time in the life of a website. As many of you told us in the survey we ran a few months ago, the Node looked old fashioned and cluttered. Its look was so 2010!

So, as a birthday gift to itself, in the last few months we have been working hard on a new look for the Node. We took your feedback and tried to make the site more modern, less busy and more functional. You will notice that there is now a single, simpler side bar. Much of the content that used to feature on the side bars, such as the links to databases and societies, is now in our new Resources section, which you can access from the menu bar. You can also find older content more easily by navigating the new Archive area. You also told us that you find the jobs page particularly useful. To make it easier for you to view all available jobs, you can now access the jobs directly from the menu bar. We welcome your feedback on our new design and how the website works, so if you have any comments, good or bad, drop us an email via this contact form!

Alongside the new site we also have an updated logo!  The new Node logo incorporates elements from the Company of Biologists logo, the not-for-profit publisher behind the Node, since we couldn’t exist without their support.

 

TheNode_RGB_AWCoB_logo_AW_RGB

 

 

 

 

 

 

The Node may have a new look and be easier to use, but at its core it really hasn’t changed. It is still your community site, the place to find out what’s new in developmental biology, and where you can post and comment without needing to ask us for permission. We hope that you like our new look!

 

 

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In Development this week (Vol. 142, Issue 13)

Posted by , on 30 June 2015

Here are the highlights from the current issue of Development:

 

Controlling Traffic jam for niche specification

FigureTissue stem cells are dependent on their local microenvironment – the niche – for regulation of self-renewal and differentiation. In the Drosophila male germline, the niche comprises a set of 8-10 somatic cells called hub cells, which are located in a cluster at the anterior of the gonad. Specification of the niche is known to require Notch signalling and the transcription factor Bowl, but is not fully understood. Lindsey Wingert and Stephen DiNardo (p. 2268) now find that the Maf transcription factor Traffic jam (Tj) plays a key role in repressing hub cell development. In tj mutants, the number of somatic gonadal cells expressing hub markers increases. Tj is downregulated in hub cells in a Notch-dependent manner, and mutation of tj can rescue hub cell formation in Notch mutants. However, while Tj depletion can induce hub cell fate, it does not promote hub cell morphology or clustering. Instead, this requires Bowl activity – also probably acting downstream of Notch. Thus, Notch signalling regulates hub cell specification and hub assembly via different downstream effectors. Intriguingly, Maf factors are expressed in the mammalian gonad, where Notch also plays a role, raising the possibility that this mechanism is conserved.

 

Cilia get sensitive with Notch

FigureIn the vertebrate neural tube, dorso-ventral cell identity is regulated by Sonic Hedgehog (Shh) signalling: increasing pathway activity promotes progressively more ventral fates. Shh signal transduction involves primary cilia, where several of the key pathway components are localised. Now (p. 2291), Kim Dale and colleagues report a role for Notch signalling in regulating Shh activity in the neural tube. Through experiments in cell culture, chick explants and mouse embryos, the authors find that Notch modulates responsiveness to the Shh signal: activating the Notch pathway renders cells more sensitive to Shh. Notch appears to act by promoting ciliary localisation of the key Shh pathway component Smoothened, as well as increasing levels of the activator form of the transcriptional effector Gli3. Moreover, cilia are longer upon Notch pathway activation. Together, these data provide an unexpected connection between the Notch and Shh pathways in the vertebrate neural tube, which impacts on neuronal fate.

 

Making furrows in the fly

FigureThe early Drosophila embryo is a syncytium. Cellularisation only occurs after 14 very rapid nuclear divisions, the last four of which occur at the periphery and are associated with transient ingressions of the plasma membrane between dividing nuclei. How do these transient furrows form and what is their function? On p. 2316, Todd Blankenship and co-workers address these questions using live-imaging approaches. First, the authors characterise the dynamics of furrow formation and retraction. They then test whether the RalA GTPase, known to be important in other systems for targeted membrane addition via the exocyst complex, plays a role in furrow dynamics. Depletion of RalA leads to a lack of membrane ingression, and the authors also find that the Rab8 GTPase and the exocyst component Sec5 are important for ingression. In the absence of RalA, and hence furrows, two different types of nuclear division defects are seen: spindle anchoring is impaired, leading to chromosome mis-segregation at anaphase, and nuclei are not efficiently separated, leading to fusion of adjacent genomes. RalA-dependent transient furrow formation is therefore important to maintain genome integrity during the early syncytial divisions in Drosophila.

 

What leaders follow: FGF keeps duct on course

FigureMany organs contain tubular epithelia, and their development involves tubule elongation, lumen formation, and establishment and maintenance of tubular integrity. Yuji Atsuta and Yoshiko Takahashi (p. 2329) investigate how these processes are coordinated, using the chicken Wolffian (or nephric) duct (WD) as a model. The WD extends posteriorly from the pronephric region, between the presomitic mesoderm (PSM) and the lateral plate mesoderm. Cells at the front of the extending tissue show mesenchymal characteristics, while towards the rear, WD cells become more epithelial and the tubule lumen forms. Here, the authors find that WD migration is driven by a dynamic FGF gradient: FGF8 is expressed in the extending PSM and serves as a chemoattractant for the leading WD cells. Where FGF concentrations are low anteriorly in the segmented somites, the rear part of the WD epithelialises. Thus, as the body axis extends and the FGF source moves more posteriorly, the WD tube forms progressively, in a manner coordinated with whole-body elongation.

 

Tissue interactions drive heart development

FigureDuring cardiac development, interactions between the endocardium – the endothelial lining of the heart – and the overlying myocardium are important for myocardial development, whereas BMP signals from the myocardium have been found to regulate late stages of endocardial morphogenesis. However, relatively little is known about early endocardial specification, or the potential role of the myocardium in this. Hedgehog signalling is known to be necessary but not sufficient for endocardial differentiation, but what other mechanisms are involved? Saulius Sumanas and colleagues now show (p. 2304) that myocardium-derived BMP plays a role in this early stage of endocardial development. When the myocardium is disrupted – either in hand2 mutants or upon genetic ablation of myocardial cells – endocardial fate fails to be specified or is lost in the endothelial progenitors. Expression of endocardial markers can be rescued by ectopic provision of BMP signals, while endocardial differentiation fails upon disruption of the BMP pathway. These data add a further layer of interaction between endocardium and myocardium, and underscore the importance of BMP signalling at multiple stages of heart development.

 

PLUS…

 

An interview with Austin Smith

DEV2227Austin Smith is a stem cell and developmental biologist, who has dedicated his career to the study of pluripotency, stem cell renewal and differentiation. He is currently the Director of the Wellcome Trust MRC Cambridge Stem Cell Institute at the University of Cambridge, UK. We met him there to discuss his research and interests, as well as his role as an editor for Development. See the Spotlight article on p. 2227

 

LIF signaling in stem cells and development

Dev ZhandsraLeukemia inhibitory factor (LIF) is a member of the IL-6 cytokine family. All members of this family activate signal transducer and activator of transcription 3 (STAT3), a transcription factor that influences stem and progenitor cell identity, proliferation and cytoprotection.  Here, Kento Onishi and Peter Zandstra provide an overview of JAK-STAT signaling during development. See the Development at a Glance article on p. 2230

 

The never-ending story: from pluripotency to plant developmental plasticity

DEV2237Unlike most animals, plants employ a post-embryonic mode of development driven by the continuous activity of pluripotent stem cells. Consequently, plants are able to initiate new organs over extended periods of time, and many species can readily replace lost body structures by de novo organogenesis. Here, Christophe Gaillochet and Jan Lohmann review how pluripotency is established in plant stem cell systems, how it is maintained during development and growth and re-initiated during regeneration, and how these mechanisms eventually contribute to the amazing developmental plasticity of plants. See the Review on p. 2237

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Categories: Research