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In Development this week (Vol. 139, Issue 3)

Posted by , on 12 January 2012

Here are the highlights from the current issue of Development:

 

CycA takes control of endoreplication

Endocycles – repeated rounds of DNA replication without intervening mitoses – are involved in several terminal differentiation events. In Drosophila, for example, endoreplication occurs during the terminal differentiation of mechanosensory bristles. Endocycles are thought not to involve mitotic cyclins but here (p. 547), Agnès Audibert, Michel Gho and colleagues overturn that view by showing that cyclin A (CycA), which was thought to function exclusively in mitosis in Drosophila, is involved in endoreplication in the bristle lineage. The researchers show that CycA accumulates during the last part of endoreplication. CycA loss- and gain-of-function both induce changes in the dynamics of endoreplication, they report, and reduce the number of endocycles. Finally, CycA is required for relocalisation of ORC2, a member of the pre-replication complex, to the heterochromatin. These and other data reveal that CycA oscillations regulate endocycle dynamics in the fly mechanosensory bristle lineage and suggest that endoreplication involves remodelling of the entire cell-cycle network rather than simply a restriction of the canonical cell cycle as previously suggested.

 

Plane fact: aPKC orientates mitotic spindles

Mitotic spindle orientation, which is essential for epithelial morphogenesis and tissue maintenance, involves interactions between cortical polarity components and astral microtubules. The molecular machinery that regulates spindle apicobasal orientation during asymmetric cell division is well understood but what orientates the spindle along the epithelial plane in symmetrically dividing epithelial cells? On p. 503, Rui Gonçalo Martinho and colleagues provide the first in vivo evidence that atypical protein kinase C (aPKC) is involved in this process. Using a temperature-sensitive aPKC allele, the researchers show that Drosophila aPKC is required in imaginal discs for spindle planar orientation and for apical exclusion of Pins, a component of the molecular machinery that links the cell cortex to the astral microtubules. Apically localized aPKC is important for spindle planar orientation in mammalian epithelial cells in tissue culture; thus, these new observations suggest that the cortical cues required for spindle planar orientation are conserved between Drosophila and mammalian cells and are similar to those required for spindle orientation during asymmetric cell division.

 

pecanex wraps Notch up

During early development of the Drosophila nervous system, Notch signalling limits neuroblast numbers by preventing the cells that neighbour neuroblasts from also choosing a neuroblast fate. Disruption of Notch signalling prevents this ‘lateral inhibition’ and produces hyperplasias of the embryonic nervous system. The absence of pecanex (pcx), which encodes a conserved multi-pass transmembrane protein of unknown function, also causes a similar neurogenic phenotype. Now, Kenji Matsuno and colleagues propose that Pcx is a novel component of the Notch signalling pathway in Drosophila (see p. 558). They show that Pcx resides in the endoplasmic reticulum (ER) and is required upstream of activated Notch. Disruption of pcx function, they report, results in ER enlargement. However, hyper-induction of the unfolded protein response in the absence of pcx suppresses both ER enlargement and the development of a neurogenic phenotype. Together, these results suggest that the ER plays a previously unrecognised role in Notch signalling that involves Notch folding and that this ER function depends on pcx activity.

 

Wnt signalling regulates ciliogenesis

In zebrafish embryos, motile cilia lining the Kupffer’s vesicle (KV; the fish equivalent of the mouse node) help to establish left-right (LR) asymmetry. Wnt/β-catenin signalling is also involved in this process but precisely how it functions is unclear. Xueying Lin and colleagues now reveal that Wnt/β-catenin signalling directly regulates ciliogenesis in the zebrafish KV (see p. 514). The researchers show that reduced Wnt signalling disrupts LR patterning and ciliogenesis and downregulates Foxj1, a transcription factor that is required for the biosynthesis of motile cilia. KV-specific expression of foxj1a, they report, requires the presence of putative Lef1/Tcf binding sites in the foxj1a enhancer region, which suggests that Wnt signalling activates fox1ja transcription directly. Importantly, reduction of Wnt signalling also impairs foxj1 expression and ciliogenesis in developing zebrafish pronephric ducts and otic vesicles, epithelial structures that require Wnt activity for their development and function. The researchers propose, therefore, that the regulation of Foxj1 expression and ciliogenesis by Wnt/β-catenin signalling is a general developmental mechanism in zebrafish.

 

Egg cell orchestrates gametophyte development

Plant germ cells develop in specialised haploid structures called gametophytes. The female gametophyte of flowering plants contains an egg cell (which develops into the embryo), a central cell (which generates the endosperm that nurtures the embryo) and two accessory cell types, but what coordinates the development of these different cell types? On p. 498, Rita Groß-Hardt and co-workers report that egg-cell signalling mediated by LACHESIS (LIS), which encodes a homologue of a yeast pre-RNA splicing factor, regulates the development of Arabidopsis female gametophytic cells. lis mutants form supernumerary egg cells at the expense of accessory cells. The researchers now show that reducing LIS transcript levels specifically in the egg cell affects all the gametophyte cell types, which suggests that the egg cell orchestrates gametophyte differentiation. Notably, reduced LIS transcript levels in the egg cell interfere with homotypic nuclei fusion in the central cell and, consequently, endosperm formation. Thus, LIS-mediated egg-cell signalling ensures that endosperm only forms in the presence of a functional egg cell.

 

DAZL takes heat off testes

Mammalian testes are usually located outside the body cavity to ensure that the male germ cells are maintained at a low enough temperature to develop properly. If the testes get too warm, heat stress can cause germ cell apoptosis, which reduces fertility. Now, on p. 568, Kunsoo Rhee and co-workers reveal a cellular mechanism that protects male germ cells from heat stress. The researchers show that brief exposure of mouse testes to the core body temperature induces the assembly of stress granules (SGs; non-membranous cytoplasmic particles that contain translationally inert messenger ribonucleoproteins) in male germ cells. DAZL, a germ cell-specific translational regulator, translocates to SGs upon heat stress, they report, and is essential for their assembly. Importantly, DAZL-containing SGs sequester specific signalling molecules, such as RACK1 (receptor for activated protein kinase C), thereby blocking the apoptotic MAPK pathway. Together, these results suggest that DAZL is an essential component of SGs and that SGs prevent male germ cells from undergoing apoptosis upon heat stress.

 

Plus…

 

New for this year: poster articles!

Cilia in vertebrate development and disease

Oh and Katsanis provide a snapshot of the structure, function and distribution of the vertebrate cilium and of the pathologies that are associated with its dysfunction.

See the Development at a Glance poster article on p. 443

 

A taste of TGFβ in Tuscany

The recent FASEB Summer Research Conference entitled ‘The TGFβ Superfamily: Signaling in Development and Disease’ was held in August, 2011 in the spectacular setting of Il Ciocco, Lucca, amidst the olive trees in Tuscany, Italy. Here, Hata and Brivanlou review this meeting and highlight the recent advances that have been made in our understanding of the transforming growth factor-β (TGFβ) signaling pathway.

See the Meeting Review on p. 449

 

Regulation of DNA replication during development

During development, DNA replication is coordinated with cell proliferation and is regulated uniquely in specific cell types and organs. Here, Nordman and Orr-Weaver highlight recent advances and technologies that have provided us with new insights into the developmental regulation of DNA replication.

See the Review on p. 455

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Shaggy hairs and stem cells

Posted by , on 10 January 2012

Our intestinal tissue doesn’t need a New Year’s resolution to keep up its amazing productivity.  Our intestinal epithelium is replenished at breakneck speed in an assembly line that begins with stem cells.  Today’s image is from a recent Development paper that discusses the importance of Notch signaling in stem cell self-renewal and intestinal homeostasis.

Our intestinal epithelium is folded and shaped into finger-like villi (“shaggy hair” in Latin) that increase the surface area of the tissue for more nutrient absorption.  Each villus has several populations of cells in homeostasis in order to maintain function and constant replenishment.  This production of epithelium starts with the actively-dividing crypt base columnar (CBC) stem cells that sit in the crypts.  Although the identity of these cells has been known for a while, the factors regulating CBC stem cell self-renewal and differentiation were not well understood.  A recent Development paper discusses the role for Notch signaling in CBC stem cell function.  According to VanDussen and colleagues, Notch signaling is required for CBC stem cell self-renewal and survival.  Notch inhibition caused a decrease in the number CBC cells, as well as precocious differentiation of more specialized intestinal cell types.  VanDussen and colleagues showed that Notch regulates CBC cell self-renewal and cell fate choice through different pathways and by targeting different cell populations.  In the images above, intestinal tissue was stained for a marker of CBC stem cells (Lgr5, green) and for proliferating cells (Ki67, red).  In normal tissue (left), CBC stem cells were found at the base of the crypts, some of which were also actively dividing (arrows).  Notch inhibition (right) resulted in a misshapen morphology of CBC stem cells, a decrease in the CBC cell marker, and a drop in the number of CBC cells that were actively dividing (arrowheads on left).

For a more general description of this image, see my imaging blog within EuroStemCell, the European stem cell portal.

ResearchBlogging.orgVanDussen, K., Carulli, A., Keeley, T., Patel, S., Puthoff, B., Magness, S., Tran, I., Maillard, I., Siebel, C., Kolterud, A., Grosse, A., Gumucio, D., Ernst, S., Tsai, Y., Dempsey, P., & Samuelson, L. (2011). Notch signaling modulates proliferation and differentiation of intestinal crypt base columnar stem cells Development, 139 (3), 488-497 DOI: 10.1242/dev.070763

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Free early career scientist places available at The Company of Biologists Workshops!

Posted by , on 10 January 2012

The Company of  Biologists run 3 cutting edge Workshops each year organised by the leading scientists in their fields.   They are small workshops with 30 attendees made up of 20 invited speakers and 10 places for early career scientists. The Workshops this year are;

New Technologies and Applications for Genome Engineering – 25th – 28th March 2012 – UK

Epigenetic Memory – 24th – 27th June 2012 – UK

Imaging in Cell Biology: Where next? – 14th – 17th October 2012 – UK

If you are a student, postdoc or in your first PI position and are interested in attending any of the Workshops detailed above, please contact workshops@biologists.com.  The deadline for applications for the March Workshop is the 21st January.  For more information please see our website – http://workshops.biologists.com.

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Bingo!

Posted by , on 9 January 2012

Somites, confocal, epigenetics, germline, stem cell… BINGO!

Thanks to all of your help and suggestions, BenchFly has now produced the Developmental Biology Group Meeting Bingo game.

From their post:

“Bingo? Are we actually suggesting you gamble during seminars? Yes! No. We’re simply providing a few key words that you may listen for during a talk… and if it just so happens that your card yields “Bingo!” sooner than your labmates’ and they have to take you out to lunch as a result, so be it…”

Visit BenchFly to play the game. You can refresh the card to get individual ones. There are over a hundred words, so there are many different possible cards to get. Good luck!

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Four Year International PhD Programme in Stem Cell Biology at the University of Cambridge

Posted by , on 5 January 2012

Closing Date: 15 March 2021

Studentships starting October 2012
Application deadline 13 January 2012
Interviews to be held 30-31 January 2012

Stem Cell Biology

Stem cells are defined by the dual capacity to self-renew and to differentiate. These properties sustain homeostatic cell turnover in adult tissues and enable repair and regeneration throughout the lifetime of the organism. In contrast, pluripotent stem cells are generated in the laboratory from early embryos or by molecular reprogramming. They have the capacity to make any somatic cell type, including tissue stem cells.

Stem cell biology aims to identify and characterise which cells are true stem cells, and to elucidate the physiological, cellular and molecular mechanisms that govern self-renewal, fate specification and differentiation. This research should provide new foundations for biomedical discovery, biotechnological and biopharmaceutical exploitation, and clinical applications in regenerative medicine.

Cambridge Stem Cell Community

The University of Cambridge is exceptional in the depth and diversity of its research in Stem Cell Biology, and has a dynamic and interactive research community that is ranked amongst the foremost in the world. By bringing together members of both the Schools of Biology and Medicine, this four year PhD programme will enable you to take advantage of the strength and breadth of stem cell research available in Cambridge. Choose from over 30 participating host laboratories using a range of experimental approaches and organisms.

Programme Outline

During the first year students will:
• perform laboratory rotations in three different participating groups working on both basic and translational stem cell biology;
• study fundamental aspects of Stem Cell Biology through a series of teaching modules led by leaders in the field;
• learn a variety of techniques, such as advanced imaging, flow cytometry, and management of complex data sets.

Students are expected to choose a laboratory for their thesis research by June 2013, and will then write a research proposal which will be assessed for the MRes Degree in Stem Cell Biology. Students will then normally commence a three year PhD.
Visit http://www.stemcells.cam.ac.uk/careers-study/studentships/ for full details.

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Book review: A wake-up call to delve deeper into the cell

Posted by , on 5 January 2012

This book review originally appeared in Development. Wendy Bickmore reviews “The Nucleus” (Edited by Tom Misteli and David L. Spector).

Book info:
The Nucleus Edited by Tom Misteli, David L. Spector Cold Spring Harbor Laboratory Press (2011) 517 pages ISBN 978-0-879698-94-2 $135 (hardback)

Why should a developmental biologist be interested in a book about the nucleus? Almost 80 years ago, Conrad Waddington put forward ideas about how gene products could regulate development. In modern parlance, much of development is the result of the differential use of the same genome in different cell types and at different developmental stages within the same organism. This originates in the nucleus, where the processes that act upon the genome – transcription, replication, repair – occur. In developmental biology papers it is not uncommon to find a final summary figure in which a signaling pathway ends up pointing into an oval-shaped nucleus, devoid of any structure or organization, save for a linear depiction of a target gene locus. However, the nucleus is not a homogenous space and neither is the genome in its natural nuclear environment arranged in a linear fashion.

The contributions in this book, from international leaders in the field of nuclear organization and function, are based upon the premise that we cannot really understand how genomes function without an appreciation and understanding of their natural cellular environment – the nucleus.

(more…)

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Book Review: The Cell, A Very Short Introduction

Posted by , on 3 January 2012

Book Info:  The Cell: A Very Short Introduction by Terence Allen and Graham Cowling. Oct 2011. 152 pages. ISBN: 9780199578757 (Paperback) Price: $11.95 /£7.99

Ever since Anton van Leeuwenhoek first peered at a living cell in 1674, scientists have been driven to learn everything they can about these tiny units of life and as a result have been developing ever more advanced tools to observe, describe and manipulate them. In the book “The Cell”, a new addition to the Oxford University Press Very Short Introductions series, Terence Allen and Graham Cowling undertook an enormous task of distilling several hundred years of cell biology research into 145 pages including 8 chapters, a further reading section, an index, a glossary and 17 illustrations.  The result is that an enormous amount of information is presented in pithy vignettes covering everything from the inner workings of the cell up to the complex interactions of cells within multicellular organisms, as well as cellular disease and directions for future research.

Chapter 1 introduces cells as highly efficient factories capable of maintaining and replicating themselves as well as interacting with and responding to their surroundings.  It includes a description of the unifying concepts common to all cells such as cellular components, subcellular organization, and life processes as well as the diversity of cells, their specialized functions and adaptations to various environments. Frequently, generalizations about particular types of cells (prokaryotic or eukaryotic, plant or animal) are intertwined with very specific information such as size of various cytoskeletal filaments.

The following two chapters introduce the subcellular components and describe how these work together to orchestrate the cell’s day-to-day function.  The nucleus and organization of the genome as well as a brief description of gene structure are described in their own chapter.

Chapter 4 and 5 discuss various processes of a cell’s life such as division, DNA replication, movement and apoptosis (programmed cell death).  Additionally there is a description of various types of specialized, differentiated cells found in multicellular organisms.  The focus is primarily on animal cells, however plant cells and bacteria living in extreme environments are briefly mentioned.

Chapter 6 focuses on stem cells in living organisms, both embryonic and adult.  Included is the definition of a stem cell, a brief history of the field and a discussion of cancer stem cells.

Chapter 7 discusses cell-based therapies from early attempts to modern applications such as blood transfusions as well as the possibilities that embryonic stem (ES) cell research offers.  The ethical debate regarding stem cells is mentioned and there is a discussion of possible applications of stem cells in the treatment of several cellular diseases such as muscular dystrophy and diabetes.

Chapter 8 focuses on the future of cell research.  It introduces fields of systems biology, synthetic biology, regenerative medicine and includes a speculative discussion about the possibility of reversing aging in the future.

A small criticism that I have is that despite the short length of the book some errors slipped through the editing process. Most notable is that the description of gene structure incorrectly names the coding sequences “introns” and the non-coding “exons”.  Although the correct definition is provided in the glossary this error might confuse a novice student of biology, especially because these terms are counterintuitive.

The illustrations, which, except for a few diagrams, are all black and white electron microscope (EM) images showing cell surfaces and subcellular structures.  The images are relevant and interesting, but for someone not used to looking at pictures of cells or EM images these might not provide as much information or generate as much interest as the authors intended.

Overall “The Cell” makes for informative and entertaining reading. The concentrated and comprehensive information provided are a perfect refresher to any biologist who wants to be reminded of the basics of cell biology or a novice biology enthusiast who wants to delve into the microscopic world of cells without the intimidation of a textbook. Although the focus is mostly on eukaryotic animal cells, those aspects that distinguish prokaryotes and plant cells are frequently pointed out. The historical anecdotes that accompany descriptions of various discoveries as well as the thought-provoking discussions about the future prospects for the biomedical applications of cell research made this book particularly enjoyable for me. For those readers who find themselves wanting to learn more the authors provide a list of resources for further reading, both books and online resources.

 

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This month on the Node – December 2011

Posted by , on 30 December 2011

Many of you may have a few days off from work at the moment. If you want to catch up on what you missed on the Node this month, read on:

BenchFly bingo game

Benchfly, a site with free video protocols and other resources for researchers, has created “Group Meeting Bingo”. The site generates bingo cards with the particular phrases common to various fields of research. They have cards for biochemistry, cell biology, and various other fields, but no developmental biology…yet!

So, let’s make a developmental biology bingo game!

Add suggestions for words to include to the post. We already have quite a few, but I’m sure you’ll find something that hasn’t been mentioned yet. You still have this weekend to add words.

Rejuvenating old cells

With the new year approaching, you may have been pondering the passage of time lately. Another year gone, another year older. But there’s hope still! Sasha wrote about a recent paper that shows that your cells are never too old for pluripotency!

“(…) Researchers began to wonder whether cellular aging was a barrier to iPS cell conversion. In a recent paper published the November issue of Genes in Development, entitled “Rejuvenating senescent and centenarian human cells by reprogramming through the pluripotent state,” Lapasset and colleagues from the Institute of Functional Genomics in France report that they have overcome this barrier and generated iPS cells from human donors as old as 101 years.”

Book reviews

Continuing from last month, we’ve republished more book reviews from Development. Click on a cover to read the review.

  

     

Also on the Node:
Dates and deadlines, including an extended early registration deadline for the LASDB meeting
-“Pigs that Fly” – Jonathan’s third rotation lab for the Wellcome Trust PhD programme.
– For more, see the full December archive.

 

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Book review: Epigenetics in all its glory

Posted by , on 29 December 2011

This book review originally appeared in Development. Melissa Mann reviews “Epigenetics: Linking Genotype and Phenotype in Development and Evolution” (Edited by Benedikt Hallgrímsson and Brian K. Hall).

Book info:
Epigenetics: Linking Genotype and Phenotype in Development and Evolution Edited by Benedikt Hallgrímsson, Brian K. Hall University of California Press (2011) 472 pages ISBN 978-0520267091 (hardback), 978-0520948822 (eBook) £59/$68 (hardback), $85 (eBook)

Ask ten scientists their definition of epigenetics and you may get ten answers. In its simplest form, epigenetics can be defined as above (epi) the level of genes (genetics), and in the book entitled Epigenetics: Linking Genotype and Phenotype in Development and Evolution, the editors, Benedikt Hallgrímsson and Brian K. Hall, have assembled 23 chapters that collectively embody epigenetics as described by this broad definition. Although the book is organized into four parts, it can be distilled into three themes that each discusses a more detailed interpretation of the field: molecular epigenetics, classical epigenetics/epigenetic interactions, and epigenetic interactions and evolution.

In its modern molecular reiteration, epigenetics is defined as a change in gene activity without a change in DNA sequence. Most molecular definitions of epigenetics also include the idea of heritability, or memory of gene activity, through cell division. Here, epigenetic modifications modulate gene expression through DNA methylation, histone modifications, changes in chromatin structure, and effects of non-coding RNAs. This book includes five chapters on molecular epigenetics, covering various organisms and topics from asexual organisms in the study of epigenetic variation to epigenetics and human disease. One chapter highlights neural development in which cell-fate switches are intimately linked with epigenetic changes. For example, transition from a neural stem cell to a progenitor cell involves a switch in co-factor associations. In response to Notch effector molecules, the HES1 repressor complex is transformed into a HES1 activator complex, thereby inducing a progenitor cell fate. A different mechanism may be utilized in neuronal fate specification in the neocortex. Changes in DNA looping and nuclear matrix binding may specify an upper layer neocortical fate. This chapter describes the current understanding of various epigenetic mechanisms involved in neural cell fate decisions.

(more…)

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Celestial or Cellular?

Posted by , on 26 December 2011

The Cell: An Image Library™ offers you a little fun this week. Please enjoy our quiz, Celestial or Cellular?
Take a look at the images and see if you can tell whether they are of cellular or celestial origin.
Take your best shot, and enter your answers at http://asterisk.apod.com/viewtopic.php?f=29&t=26228. Visit again each day this week for a new quiz and the correct answers to the previous day’s quiz.
Enjoy, and please share this with your friends.
Visit The Cell: An Image Library and learn how to submit your images.
Reuse of quiz images may be subject to licensing restrictions, which will be revealed with the identity of the image on the day following the quiz.

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