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Help the Node by completing our survey!

Posted by , on 19 January 2015

The Node was launched almost 5 years ago, and it is now time to revise its design and functionalities.

We have created a short survey that will help us gather your feedback. Please take a few minutes to complete it- the Node is here for the community, and we need your input to know how we can improve! To thank you for your time, at the end of the survey you can choose to enter a prize draw to win a bag of goodies from the Node and Development!

 

Go to the Node Survey

 

The survey will be open until the 15th of February.

 

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A day in the life of a Honeybee lab

Posted by , on 19 January 2015

Welcome to the Lab for Evolution and Development.

The lab is situated in the deep south of New Zealand in the quaint Scottish inspired little city of Dunedin. 1/5 of the population of Dunedin is made up of students and the University is considered the heart of the Dunedin community. I was a student here for 9 years and I love Dunedin and our lab so much that I decided to stay on in our lab as a Post-doctoral Fellow. Our lab is based in the Biochemistry Department and is primarily focused on answering evo-devo questions using a number of different Arthropods species. We are particularly interested in unraveling the mechanisms that underlie phenotypic plasticity and for these questions we use the Western honeybee Apis mellifera.

 

1

View of the historic University of Otago Clock Tower Building, with Signal Hill in the background and the Leith River which runs through the heart of the University.

 
 The honeybee displays some of the most remarkable examples of phenotypic plasticity seen in animals. During larval development of the female honeybee, differential nutrition leads to the development of two phenotypically very different females castes; the queen and the worker honeybees. In addition to this and what was the focus of my PhD research is the ability of the worker honeybee to activate its ovaries upon removal of the queen from the hive (see image below). Ovary activation in the worker honeybee is a process that transforms the quiescent worker ovary into a fully functioning differentiated tissue that can produce drone eggs. Our lab has found that the physiological transformation of the worker ovary involves large-scale gene expression changes and chromatin remodelling for the maintenance of the active worker ovary.

 

2

Queen, worker and queen-less worker ovary. Columns depict Queen ovaries on the right, worker ovaries in the middle and the process of ovary activation on the left. As a result of female honeybee caste development, and under normal conditions when the queen is present in a hive, workers are reproductively dormant. During the activation process the worker ovary goes through a number of stages until it finally develops into a fully functioning ovary. Their stage of activation is scored using a four-point scale, modified from Hess (Hess, 1942). Stage 0 is an ovary from a worker that is in a queen-less hive however no activation is seen. In stage 1 the ovary enlarges and begin to differentiate (arrowheads). At stage two oocytes have begun to develop within the ovary and by stage 3 fully developed eggs are present and can be laid as drone eggs in the hive.

 

 

Day in the Life of a Honeybee lab: 6th of November

I woke up today to a beautiful spring day, not a cloud in sight, perfect weather for doing some honeybee work. I jumped in my car, drove for 5 minutes to the Uni, found a park and grabbed a coffee on the way to the department. Once I got into Biochemistry and sat at my desk I checked quickly on the phylogeny that I had been running on the server overnight. Success. The best way to start the day. I then rounded up the rest of the lab for a lab photo (we haven’t done one in ages and this blog post was a great excuse). Aren’t we are good looking group?

 

3

 

Next up I asked our wonderful in-house beekeeper Otto to retrieve some honeybees ready for dissection this afternoon. Spring and summer are the busiest times in the lab for dissections as this is the only time when it is feasible to raid the hives and collect enough tissue for the upcoming year of experiments. The whole lab gets stuck in and sometimes we are lucky enough to get new forceps, which is handy when you are out of practice. With so many different projects on the go we need lots of different types of tissue for a number of different experiments including; in situ hybridization, immunohistochemistry, RNA and DNA analysis and chromatin immunoprecipitation, to name a few. The sheer volume of tissue required as well as creating the active worker hives (by removing the queens) means we have a number of hives situated around Dunedin including a room within the lab that is dedicated to keeping a few small hives of bees. These bees can come and go as they please through plastic tubing that connects the hive to the outside of the building. Otto and Mackenzie however, made the most of the fine weather and went to collect bees from the hives that we have on the roof of the adjacent chemistry building. Unfortunately for me I can no longer participate in the handling of bees as I was stung and became allergic during my PhD. So today I was banished to the microscope room to image some of my immunos I had completed the day before. Imaging is my favourite thing to do at work and it is particularly pleasant and easy on our wonderful confocal microscope.

Mackenzie kindly captured some shots of Otto hard at work. In the images below you can see him checking carefully for the location of the queen, the amount of brood (developing larvae), pollen and honey. Once the hive has been checked and the location of the queen is known worker honeybees can be collected into small containers to take back to the lab.

 

4

Images clockwise from top left. Worker honeybees on the edge of a frame. The beautiful array of pollen loaded into the cells of the comb. Otto checking the frames for brood, honey, pollen and the queen. The queen is easily identifiable in the hive because she has a relatively longer abdomen and in this case has had her thorax painted for identification purposes. The smoker, an important piece of equipment for beekeeping. Otto uses the smoker to calm the bees in the hive which reduces their aggression. The middle image shows the entrance to our bee room.

 

 

When they returned to the lab they put the bees into the fridge to send them into a peaceful slumber. Once the bees were asleep, Otto, Liz and Mackenzie got to work dissecting out the ovaries of the worker honeybees, collecting them in ice cold PBS, so that I could extract chromatin for my ChIP reactions later on in the afternoon.

 

5

Mackenzie dissecting out the ovaries from worker honeybee abdomens.

 
That afternoon I finished up my chromatin preps and asked around the lab to see what other people were up too. Andrew was doing some enthralling tissue culture in the room next door for protein expression. Liz was working tirelessly on a publication and Mackenzie was finishing off an in situ hybridization in worker ovaries. Before I went home for the day I started running another phylogeny, cleaned my bench and answered some emails, already for another day in the life of honeybee lab.

 

6

Drug trial cages. These house ~100 worker honeybees. On each side there are caps that contain complete bee food and are supplemented with drug. The bees are also provided with water in a falcon tube and kept at a constant temperature of 34 degrees Celsius in an incubator. To test the function of biological processes in the adult honeybee we feed worker honeybees drug inhibitors over a 10 day period to see whether the drug effects the process of ovary activation. These trials are restricted to the warmer months as we require newly emerged adult bees so that age can be controlled for in these experiments. The very last day of this experiment is an intense day of dissecting and imaging the ovaries from some 800+ honeybees. These images are then scored blindly by two people according the Hess scale seen in image 2 to assess whether the drug has had an effect on ovary activation in comparison to the control cages.

 
The 6th of November is only a snapshot of the goings on in the Lab for Evolution and Development. Some of the most important experiments happen during summer including RNAi in honeybee embryos and drug trials on adult worker bees, in order to test the biological function of genes and biological pathways. In addition December 2014 will be hectic what with graduation, our Christmas outing and a race to the finish line to complete some of our pending publications as well as the normal day-to-day lab work. As we come into the summer months the lab will be bustling as we welcome in new students and members of the lab focus on getting the majority of their experimental work underway. If you would like to know more or are in our neck of the woods at some point drop us a line we would be more than happy to show you through the lab.

 

 

Node day in the life new doodle squareThis post is part of a series on a day in the life of developmental biology labs working on different model organisms. You can read the introduction to the series here and read other posts in this series here.

 

 

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Applications for the 122nd Embryology Course at the MBL in Woods Whole, MA are due February 2nd.

Posted by , on 16 January 2015

We invite you to apply for admission to the longest-running course in the history of Embryology. An intensive six-week laboratory and lecture course for advanced graduate students, postdoctoral fellows, and more senior researchers who seek a broad and balanced view of the modern issues of developmental biology. Limited to 24 students.

The integrated lectures and laboratories provide a comprehensive coverage of the paradigms, problems, and technologies of modern developmental biology, cast within a framework of metazoan evolution. Students are exposed to a wide variety of embryonic systems, including intensively studied genetic model systems (e.g., C. elegans, Drosophila, zebrafish, mouse) and others with well-established experimental attributes ( e.g. chick, sea urchins, frogs, ascidians). In addition, students will be introduced to a wide range of emerging systems, including locally available marine organisms, that help fill in the evolutionary history of animal diversity (e.g., cnidarians, nemerteans, planaria, crustaceans, mollusks, and annelids) and that are becoming established as experimental systems in their own right.

  • Click on image to apply!

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The Node in York

Posted by , on 14 January 2015

In our first visit of the year will be to York, in the north of England! Our community manager Cat Vicente will be at the department of Biology this Friday (16th of January) to give two talks about careers in publishing and science communication:

– 10.30 a.m. – Coffee and Careers session, aimed at PhD students and postdocs

– 1 p.m.- careers talk aimed at undergraduate students

 

If you are based in York do get in touch. Our community manager will be around all day, and she is keen to meet Node readers and hear your thoughts about the site!

 

Node York

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Pan-American Society for Evolutionary Developmental Biology – Inaugural 2015 Meeting

Posted by , on 14 January 2015

We welcome you to join us for the inaugural meeting of the Pan-American Society for Evolutionary Developmental Biology, which will be held on the Clark Kerr Campus at the University of California Berkeley from August 5-9, 2015.  The meeting will feature an exciting lineup of 22 invited plenary speakers with an incredible diversity of approaches to understanding evolutionary developmental biology.   34 abstracts will be selected for talks to complement the plenaries, and we invite the remaining attendees to participate in what promises to be a highly stimulating poster session, for which we have allocated considerable time.

To find out more about the Society, please visit www.evodevopanam.org

To register, go to www.evodevopanam.org/meetings–events.html

Organizing Committee
Nipam H. Patel – University of California, Berkeley
Christopher Lowe – Hopkins Marine Station, Stanford University
Karen Sears – University of Illinois
Ehab Abouheif – McGill University

SEDB Meeting

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Want to attend Adult Neurogenesis 2015? Go as the official meeting reporter…

Posted by , on 12 January 2015

Adult Neurogenesis: Evolution, Regulation and Function
May 6-8, 2015 – Dresden, Germany

Website: http://www.abcam.com/AdultNeurogenesis2015

Dresden landscape 140x170 (website)

2015 is the 50th anniversary of Joseph Altman’s landmark discovery of adult neurogenesis. To celebrate, the fourth conference in Abcam’s Adult Neurogenesis meeting series this meeting will put the developmental process of adult neurogenesis and its regulation into the wider context of its functional and presumed evolutionary relevance. Hosted by the Center for Regenerative Therapies in Dresden, Germany on May 6-8, 2015, this conference offers opportunities for participants to hear the latest news and developments, present their work, take part in discussions and to network with colleagues from around the world.

 

Free registration for grabs!
Abcam and the Node are looking for an official meeting reporter to attend this meeting. The Reporter will be responsible for providing regular updates of interesting talks/discussions for social media posts (by Abcam), plus a meeting report of their experience and the sights and sounds of the meeting (for publishing on The Node and Abcam website).

To apply to be the meeting reporter, please send a short paragraph (max. 200 words) to events@abcam.com, letting let us know why you’re are the best scientist for the job! Application deadline: March 26, 2015. The winner will receive free registration to the meeting (travel and accommodation not included).

 

Meeting information:

Organizer:  Gerd Kempermann (Center for Regenerative Therapies TU Dresden, Germany)

Keynote speaker:  Fred Gage (Salk Institute, US)

Confirmed speakers:  Nora Abrous , Irmgard Amrein, Benedikt Berninger, Federico Calegari, Paul Frankland, Jonas Frisen, Wieland Huttner, Sebastian Jessberger, Caghan Kizil, Paul Manger, Ana Martin-Viallalba, Hannah Monyer, Hongjun Song

Call for abstracts:  Participants are invited to submit abstracts and a number these will be selected for short talk and poster presentations. Abstracts can be submitted during online registration.

Important dates:
•  February 9, 2015:   Early bird registration and oral abstract submission
•  March 26, 2015:  Standard registration and poster abstract submission

 

 

*9th April*

Congratulations to our meeting reporter competition winner!

GovindCongratulations to Nambirajan Govindarajan, winner of The Node/Abcam meeting reporter competition. Nambirajan has won free registration to Adult Neurogenesis: Evolution, Regulation and Function (May 6-8, 2015 in Dresden, Germany) and he will be posting, tweeting from the meeting as well as providing a full report after the meeting (available on the Node and Abcam website).

Nambirajan is a postdoctoral fellow at the German Center for Neurodegenerative Diseases (DZNE). Find out more about Nambirajan’s background and what he is most looking forward to at the meeting on the Abcam website.

To keep up with the what is happening and being discussed at the meeting by following Abcam on Facebook (link) and Twitter (link).

 

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Get involved with Young Embryologist Network!

Posted by , on 12 January 2015

Looking for a New Year’s resolution? Get involved with the Young Embryologist Network!

Last year, Young Embryologist Network (YEN) seminars took place at Oxford University, Cardiff University and institutions across London with the help of postgrads, postdocs and young PIs… just like you!

This year we want to keep growing! We plan to organise YEN seminars in various Universities and Institutions around the country in 2015.

Become a YEN representative along with others nationwide!

  • Promote the Network and annual meeting YEN:2015
  • Co-ordinate seminars at your institution
  • Blog on our website about seminars
  • Spread exciting embryology research across the country

Email youngembryologistnetwork@gmail.com for further information or visit www.youngembryologist.org to see what we are all about!

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International Neuroscience Doctoral Programme (INDP) at the Champalimaud Foundation in Lisbon – Portugal

Posted by , on 8 January 2015

Closing Date: 15 March 2021

FINAL-INDP2015-Golden

Applications from independent thinkers with curiosity, creativity and drive are sought to join the Champalimaud Foundation’s International Neuroscience Doctoral Programme (INDP). The INDP aims to provide students of diverse backgrounds with a foundation to perform innovative and interdisciplinary work in basic or applied neuroscience at an international level. The Programme is hosted at the Champalimaud Centre for the Unknown, in Lisbon, Portugal, a leading center for research, technology and clinical care.

Successful applicants will demonstrate the ability to tackle difficult intellectual challenges, to learn new skills and ways of thinking and to work passionately as part of a research team. Predoctoral training in quantitative disciplines (e.g. physics, mathematics, computer science), biological sciences (e.g. biology, medicine, bioengineering) or related fields is important. Previous research experience is also desirable but not required. Applicants should have a Masters degree and/or a 4+ year undergraduate degree, or will be obtaining their degree by no later than December 31st, 2015.

The INDP is associated to the Champalimaud Neuroscience Programme (CNP), comprising seventeen research groups with a focus on the neural circuits and systems underlying mind and behaviour. Before beginning research on a thesis project, admitted students will complete one semester of intensive courses and will be able to perform summer rotations in CNP laboratories. Courses are led by distinguished local and invited international scientists. The topics of instruction include cellular & synaptic physiology, development & neuroanatomy, sensory & motor systems, neuroethology or cognitive neuroscience. All courses have a practical component such as programming exercises, small projects, and experimental work in the INDP dedicated teaching laboratory. The overall format emphasizes participation, team-work and informal interaction in both classroom and laboratory.

The INDP is supported by funding from the Champalimaud Foundation and the Portuguese Science and Technology Foundation (Fundação para a Ciência e a Tecnologia, FCT). Full tuition and stipend to perform courses and thesis work will be ensured for successful applicants of all nationalities for a period of 4 years.

The application deadline is Feb 15th, 2015.

Applications should be submitted through this page.

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In Development this week (Vol. 142, Issue 2)

Posted by , on 6 January 2015

Here are the highlights from the new issue of Development:

 

The ‘second brain’: taking gut development up a Notch

FigureThe vertebrate gastro-intestinal (GI) tract consists of a regionalized epithelial tube surrounded by mesenchyme that later differentiates into smooth muscle. During the early stages of stomach patterning in chick embryos, the primitive GI track is colonized by vagal enteric neural crest cells (vENCCs), which will give rise to the enteric nervous system (ENS). The important role of the ENS in controlling GI function is well understood, but its contribution to the development of the GI tract has never been addressed. On p. 331, Sandrine Faure, Pascal de Santa Barbara and co-workers demonstrate that vENCC ablation impairs mesenchyme proliferation and differentiation. Moreover, reducing the number of vENCCs alters the molecular identity of both the mesenchyme and the epithelium, such that they express intestinal markers. Mechanistically, the authors show that these defects in stomach patterning and differentiation result from the ectopic activation of Notch and BMP4 signalling; the downregulation of both these pathways is necessary for proper stomach development. Altogether, this work reveals that vENCCs control stomach patterning and differentiation through the inhibition of Notch, shedding light onto the mechanisms that govern the contribution of the ENS to GI tract development.

 

Chickadee: building a nest for the germline

FigureThe apical region of the adult Drosophila testis harbours a stem cell niche that contains germ stem cells, which differentiate into spermatocytes, and somatic cells, which provide nutrients and regulate the proliferation and differentiation of the germline. During spermatogenesis, somatic cells encapsulate the germline cells, isolating them from the environment by providing a permeability barrier. Disruption of either encapsulation or permeability barrier function has catastrophic effects on spermatogenesis, resulting in sterility. Here, Guy Tanentzapf and co-workers investigate the genetic determinants of soma-germline interactions, specifically during germline encapsulation (p. 268). Using a novel permeability assay, they show that encapsulation and the creation of a permeability barrier are actually two separate processes. Furthermore, disrupting the function of chickadee, the Drosophila ortholog of Profilin, causes altered encapsulation and consequent failure of the permeability barrier formation. Lastly, the authors demonstrate that the permeability barrier, which needs functional junctional proteins, is required to restrict the range of niche-derived BMP signalling. In summary, this work identifies Chic as a key regulator of the two distinct phases of soma-germline interactions during early spermatogenesis.

 

A key role for Wnt-mediated laminin synthesis in fin morphogenesis

FigureLimb and fin morphogenesis start with the formation of the apical ectodermal ridge (AER), an epithelial signalling centre that coordinates appendage development. Wnt signalling is required for AER induction and several extracellular matrix (ECM) components are necessary for proper limb formation. Mahendra Sonawane and colleagues (p. 320) set out to explore the mechanisms regulating ECM synthesis and the role of Wnt signalling during appendage development – using the zebrafish median fin as a model. They observe that cell morphology in the distal part of the AER is distinct from the rest of the appendage epithelium, and that these differences in morphology correlate with a gradient of Wnt. Mechanistically, canonical Wnt signalling modulates cell shape with spatiotemporal precision by regulating the expression of the ECM component laminin α5, which signals via integrin α3 to influence cell morphology. Finally, the authors show that those mechanisms are conserved in the pectoral fin. This study uncovers a novel mechanism in which canonical Wnt signalling controls laminin synthesis to regulate epithelial cell shapes and tissue morphology during vertebrate appendage development.

 

Regulating progenitor pools in the lung

FigureThe secretory and multiciliated cells of the adult lung are constantly replenished by multipotent epithelial progenitors: the basal cells. Basal cells give rise to parabasal intermediate progenitors, which then terminally differentiate into ciliated or secretory cells. However, the specific molecular mechanisms governing the production of parabasal cells in the lung remain mysterious. Using genetic and pharmacological approaches in air-liquid interface cultures of adult airway progenitors, Wellington Cardoso and colleagues (p. 258) find that selective activation of Notch 3 identifies parabasal cells and controls the balance between basal and parabasal progenitor cells in airways. The authors show that Jagged 1 and 2 in basal cells are crucial for activation of Notch 3 signalling and for the generation of the pool of parabasal cells. Notably, individuals with chronic obstructive pulmonary disease were found to exhibit Notch 3 hypo-activation and an expanded basal progenitor pool. This work helps to unravel the precise molecular determinants regulating the airway progenitor pools, that are crucial for lung homeostasis.

 

PLUS…

 

Plant germline formation: common concepts and developmental flexibility in sexual and asexual reproduction

DEV229During the development of the plant reproductive lineages – the germlines – typically, single sporophytic (somatic) cells in the flower become committed to undergo meiosis.  Here, Grossniklaus and colleagues review recent studies examining the molecular mechanisms underlying cell specification and the acquisition of reproductive fate in sexual and asexual plant species. See the Review on p. 229

Establishing neural crest identity: a gene regulatory recipe

BronnerF1croppedThe neural crest is a cell population that contributes to a variety of derivatives, including sensory and autonomic ganglia, cartilage and bone of the face and pigment cells of the skin. Simões-Costa and Bronner examine neural crest development from a gene regulatory perspective and discuss how the underlying genetic circuitry results in the features that define this unique population. See the Review on p. 242

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Life’s Blueprint website

Posted by , on 5 January 2015

Dear Colleagues,

I recently published a popular book presenting the concepts of embryonic development (Life’s Blueprint: The science and art of embryo creation) at Yale University Press. In addition to the text, I tried to convey the concepts of embryonic development by presenting pairs of images, where one portrays a biological example and the other depicts a metaphor from the human world that conveys the paradigm through human interactions. The goal is to make the scientific concepts more accessible to the public through these analogies, to allow the viewers to echo their experiences, and become more active participants. Indeed, when this project was presented to diverse audiences including students, teachers, scientists or laypersons, it proved to be highly effective in engaging the audience.

In order to make the project accessible to scientists, teachers and students, I have launched a web site. All images can be freely downloaded from this site as JPEG or PPT. In addition, sample chapters, and a scientific image glossary that presents the biological background of each image can be downloaded from this site.

Finally, the site contains an Interactive board, where viewers and readers are encouraged to add their comments, and to upload their personal versions of scientific or non-scientific images that depict the concepts of embryonic development.

I encourage you to explore this site and use it.

http://shilobook.weizmann.ac.il/

Benny Shilo

Lifesblueprint

 

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