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Group Leader position available at MRC-NIMR London

Posted by , on 4 September 2011

Closing Date: 15 March 2021

Applications are invited for a Principal Investigator position to lead a new research group in Cell and Developmental Biology. We are particularly interested in candidates using quantitative approaches to study any aspect of the cellular and molecular dynamics of developing tissues.

Candidates should have an outstanding track record and an ability to lead a team pursuing original long-term research goals. Core support, including laboratory and animal staff will be provided by the Medical Research Council. MRC-NIMR offers an exciting, supportive and collaborative environment, comprising state-of-the-art imaging and mass spectrometry, high throughput sequencing and computational facilities, FACS, and excellent transgenic fish, frog, mouse and Drosophila facilities

For an overview of research at NIMR, see www.nimr.mrc.ac.uk

Informal enquiries to J-P Vincent (jvincen@nimr.mrc.ac.uk) or James Briscoe (jbrisco@nimr.mrc.ac.uk)

Applications should include a cover letter, full Curriculum Vitae, the names and addresses of three referees, an outline of current research interests (1 page) and a proposal for future research (1-2 pages).

The level of appointment will be determined based on expertise and experience. Benefits include Membership of MRC Final Pension Scheme and 30 days annual leave.

Closing date: 31 October 2011 Interview date: to be confirmed

Applications are handled by the RCUK Shared Services Centre; to apply please visit our job board at https://ext.ssc.rcuk.ac.uk and complete an online application form. Applicants who would like to receive this advert in an alternative format (e.g. large print, Braille, audio or hard copy), or who are unable to apply online should contact us by telephone on 01793 867003, Please quote reference number IRC 27831.

The MRC is an Equal Opportunities Employer
Final appointments will be subject to a pre employment screening

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Node updates

Posted by , on 31 August 2011

Survey
As you know we carried out a survey about the Node this summer. Thank you to those who answered our questions! It was very helpful. We’re currently analysing the results, and you can expect a report on the Node soon.
One lucky survey participant, Greg Shanower of The Commonwealth Medical College in Scranton, Philadelphia (US), won the prize draw, and has been sent some gifts from Development and the Node. Congratulations!

Technical updates
We’ve been battling some technical glitches on the Node. At the moment, commenting is not working properly. We’re trying to find a solution for this as soon as possible. We may need to take the site down for a short while later this month to work on this and general site updates, but will let you know about that beforehand. You can always find us on Facebook and Twitter to keep up to date on any site downtime or to leave us comments, or you can email us directly via thenode[at]biologists.com .

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Better late than never… 70th SDB meeting report

Posted by , on 31 August 2011

Thanks to the support from the Company of Biologists I had the opportunity to attend the 70th SDB meeting that was held last month in the hot but wonderful city of Chicago. During three days we enjoyed more than 60 excellent talks and about 500 really good posters that were focused on different aspects of developmental biology …

We had the opportunity to hear many outstanding talks but two of them particularly caught my attention, the one given by Tom Kornberg during the Presidential Symposium and the one given by Peter Reddien during the Stem Cell Biology Session. Tom Kornberg lectured us about the specificity of a long distance signalling mechanism that operates during Drosophila imaginal discs development and involves the use of cytonemes, specific types of filopodia that work as channels through which  morphogen signalling proteins move from a producing cell to a target cell.  Peter Reddien gave a remarkable talk about the molecular basis of regeneration in planarians, in which he explained to us how a single transplanted neoblast (adult planarian stem cell) can restore the regenerative capacity of a lethal irradiated worm.

Among the sections I enjoyed the most was the Hilde Mangold Posdoctoral Symposium where eight SDB postdoctoral members gave short talks that were judged by a committee who selected the best speaker to receive an Award. The winner of this year was Lena Ho from the Institute of Medical Biology in Singapore.

During the closing session we had the pleasure of listening to the Awards lectures where Gail Martin and Ruth Lehmann gave two extraordinary talks in which they made a summary of their successful scientific careers.

The meeting was exceptionally well organized, everything from the welcome talk to the Closing banquet went perfectly.

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September desktop calendar

Posted by , on 30 August 2011

We’re as surprised as you are that September starts in a few days! Time to get a new desktop calendar.

While it may look like an African violet, this is actually a staining of the four-cell stage of a slipper limpet (Crepidula fornicata) just about to cleave to the eight-cell stage. This image, taken by Anna Franz of the University of Oxford, was one of the candidates in the second Development cover image voting round of images taken at the 2010 Woods Hole Embryology course.

Visit the calendar page to select the resolution you need for your screen. The page will be updated at the end of each month with a new image, and all images are chosen from either the intersection image contest or from the images we’ve featured from the Woods Hole Embryology 2010 course.

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7th European Zebrafish Meeting

Posted by , on 29 August 2011


During the European summer Edinburgh, the Scottish capital, is famously the place to be at while it hosts its world-renowned Festival. But this year it is also the place where the European Zebrafish Meeting was celebrated. The efforts of the Local and International Organizing Committees of the 7th European Zebrafish Meeting made this possible.

As a 2nd year PhD student, I was very keen to visit this exciting city and to take part in my first international meeting. The opening reception consisted of a cocktail in the Edinburgh International Conference Centre, which gave visiting researchers the chance to meet fellow scientists from other countries but also to have a look at the sponsors’ stands. It was a promising start that was then followed by four days of amazing talks and poster sessions.

The attendees had the opportunity to choose from a wide variety of sessions on subjects such as behavior, sensory systems, regeneration and stem cells, infection and immunity, organogenesis, muscle, skin and connective tissue, cancer and, of course, development. All of those I managed to attend had excellent speakers. In particular, I enjoyed Robert Reinhardt’s (Wittbrodt Lab) talk about vertebrate synexpression genes, where he showed that synexpression groups (composed of spatio-temporally co-expressed genes which act in the same biological process) share common cis-regulatory motifs. As my own project is on eye development I was also partial to the talk by Fabienne Poulain (University of Utah) who proposed a model to explain the trajectory of retinal axons in the optic tract. She explained how dorsal axons in the retina arrive to the lateral part of the tectum and how the others degenerate. This sorting is a heparan sulfate-dependent mechanism.

Florence Marlow´s talk (Solnika-Krezel lab) about the new cell polarity pathway component Gpr125 was also very interesting. This gene is involved in the stabilization of polarity within the plane of an epithelium. Finally, it’s certainly worth mentioning Florencia Cavodeassi´s talk (Stephen Wilson lab) about morphogenesis of the forebrain. She explained the important role that boundaries of Ephrin activity in the anterior neural plate have in the specification of the eye field and the subsequent morphogenesis of the forebrain.

During the poster sessions, students like myself shared our research and got helpful feedback from doubts with the wide variety of experts available, who were happy to discuss our queries.

At this meeting, PhD students like me had a great opportunity to expand our scientific knowledge. It doesn´t matter what you are working on, at the EZM you can learn a lot about what people are doing all over the world and about the latest techniques available. Hopefully, you can also discover new tools that might be useful for your own project and which you had not considered.

Once the talks had finished, the hosting committee organized a concert in St. Mary’s Cathedral, where we enjoyed listening to one of the most famous choirs in the world.

However, this was not the end of our cultural experience. We were yet to see the most emblematic place in Edinburgh. The visit to Edinburgh Castle during the last night of the Meeting was amazing.  The environment transported us back to the Middle Ages. We could breathe the power of many Scottish kings. We were treated to a cocktail in the courtyard, where we enjoyed a performance by a group of bagpipers: you have not experienced Scotland if you’ve not heard bagpipes.  It was all very exciting indeed.

Finally, Berta Alsina and the Spanish committee presented a brief overview of Barcelona (Spain) where the next European Zebrafish Meeting will take place in 2013.

If, like myself, you have fish as your experimental model, I encourage you to attend a zebrafish meeting at some point during your PhD because it opens up the possibilities of what your model can do for you, and you get to meet many people from the community. The Edinburgh Meeting was a great occasion to learn about cutting edge science and I am very glad I was part of it.

Enjoy the photos and feel free to share your comments.

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The Cell: An Image Library http://www.cellimagelibrary.org

Posted by , on 29 August 2011

The Cell: An Image Library

Help us reach our goal of 1000 members in our LinkedIn group. Join us at http://www.linkedin.com/groups?about=&gid=3733425.

The Cell: An Image Library http://www.cellimagelibrary.org

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In Development this week (Vol. 138, Issue 18)

Posted by , on 23 August 2011

Here are the research highlights from the current issue of Development:

Shaping up the Hippo pathway

The Hippo pathway, which regulates cell proliferation, is regulated by cell density: low cell density induces weak Hippo signalling, leading to nuclear accumulation of the transcriptional co-activator Yap and the promotion of proliferation, whereas high cell density prevents nuclear accumulation of Yap and suppresses proliferation. The mechanisms by which cells detect density, however, are unknown. Here, on p. 3907, Hiroshi Sasaki and colleagues show that cell morphology plays a key role in regulating the Hippo pathway. The researchers show that manipulation of NIH3T3 cell morphology, by culture on fabricated microdomains, regulates the subcellular localisation of Yap. These changes in cell morphology, they report, lead to changes in actin stress fiber quantities and the subsequent regulation of Yap phosphorylation and localisation. Finally, the researchers show that stress fibers regulate Yap upstream of, or at the level of, the protein kinase Lats. The researchers thus propose that a cell morphology-based mechanism, mediated by stress fibers, cooperates with a cell adhesion-based mechanism to achieve density-dependent control of cell proliferation.

Vreteno: a novel protein in germline piRNA biogenesis

In Drosophila, Piwi-interacting RNAs (piRNAs) preserve genome integrity in the germline by silencing mobile genetic elements, such as transposons. On p. 4039, Ruth Lehmann and co-workers report the identification of Vreteno, a novel gonad-specific protein that is essential for germline development and primary piRNA biogenesis in Drosophila. The researchers demonstrate that vreteno (vret), which was identified in a screen for maternal-effect mutations affecting oocyte polarity, is essential for germline development. They further show that Vret, which contains two Tudor domains, interacts with Piwi and Aubergine to regulate their stability and subcellular localisation. Using microarray analyses, they confirm that vret regulates transposon silencing in both the germline and somatic tissues of the Drosophila gonad. Finally, the authors report, in the absence of Vret, Piwi-bound piRNAs are lost, whereas piRNAs can engage in Aubergine- and Argonaute 3-dependent `ping-pong’ amplification. The authors thus suggest that Vreteno regulates transposon silencing by acting at the early stages of primary piRNA processing.

Joining forces: PCP and apical-basal polarity

Cell polarity can be defined in terms of the polarity of a cell with respect to others in the same plane (planar cell polarity; PCP), or in terms of polarity based on the subcellular localisation of cell structures, proteins or domains (apical-basal polarity; ABP). The extent to which these polarity pathways are linked, however, is unclear. Here, Janet Heasman and colleagues investigate interactions between the PCP protein Vangl2 and the ABP component aPKC in Xenopus oocytes (p. 3989). The researchers show that Vangl2 is enriched animally in subcortical islands, where it interacts with vesicle associated membrane protein 1 (VAMP1) and acetylated microtubules. The distribution of these islands and the microtubule cytoskeleton, they report, is dependent on aPKC. Importantly, the researchers show that both maternal Vangl2 and aPKC are required to establish asymmetries in the oocyte and early embryo. These data highlight important links between the PCP and ABP pathways, suggesting that Vangl2 and aPKC are part of a common network that influences oocyte and embryo patterning.

Snail enhancers step out of the shade

The expression of critical developmental genes can be regulated by multiple cis-regulatory modules (CRMs), and it has been suggested that remote CRMs are redundant to promoter proximal CRMs. But what is the function of these multiple CRMs and are they truly redundant? To answer this question, Angelike Stathopoulos and co-workers (p. 4075) examine two CRMs from the Drosophila snail gene locus and show that these CRMs interact in a non-additive manner to regulate snail expression. The researchers demonstrate that the CRMs drive distinct patterns of gene expression in early embryos. Furthermore, they report, the distal CRM acts to limit the expanded expression domain of the proximal CRM, whereas the proximal CRM serves to `dampen’ the levels of expression driven by the distal CRM. Importantly, the CRMs are not functionally equivalent; only the distal CRM is required in snail transgenes to rescue snail mutants. Thus, the authors propose, complex interactions between CRMs are required for fine-tuning the patterns and levels of snail expression during development.

Ciliogenesis: arrested development at the node

The rotation of cilia on cells within the node of mammalian embryos generates a leftward fluid flow that establishes left-right asymmetry. But what regulates ciliogenesis at the node? Here (p. 3915), Yuji Mishina and colleagues show that cell cycle arrest, mediated by bone morphogenetic protein (BMP) signalling, is required in node cells to trigger nodal ciliogenesis in mice. The authors show that epiblast-specific deletion of Acvr1, which encodes a BMP type 1 receptor, results in abnormal left-right patterning in early embryos; the node forms in these mutants but nodal ciliogenesis is compromised. Using Acvr1-deficient mouse embryonic fibroblasts, they further demonstrate that BMP signalling through ACVR1 positively regulates p27Kip1 stability and phosphorylation, which in turn maintains quiescence and allows the formation of primary cilia. Importantly, the researchers report, p27Kip1 is present and phosphorylated in quiescent nodal cells, whereas the corresponding cells in Acvr1 mutants are proliferative and show reduced p27Kip1 expression and phosphorylation. These studies provide valuable insight into the mechanisms by which primary cilia form at the node.

Distinct roles for Nodal and Cripto in stem cells

Extra-embryonic endoderm stem (XEN) cells can be derived from the mouse primitive endoderm, which gives rise to two extra-embryonic tissues: the visceral endoderm (VE) and the parietal endoderm. However, despite displaying many characteristics of primitive endoderm, XEN cells only contribute effectively to parietal endoderm in mouse chimeras. Here, Michael Shen and co-workers study the differentiation of XEN cells in response to Nodal, a member of the TGFβ superfamily, and Cripto, a Nodal co-receptor (p. 3885). Importantly, the researchers show that XEN cells treated with either Nodal or Cripto display an up-regulation of VE markers and contribute to VE in chimeric embryos. Notably, they report, the response of XEN cells to Nodal and Cripto differs: the response to Nodal is blocked by treatment with an Alk4/Alk5/Alk7 kinase inhibitor, whereas the response to Cripto is unaffected, suggesting that Cripto can act independently of these receptors’ activity. These findings provide key insights into visceral endoderm specification and define distinct pathways for Nodal and Cripto during cell differentiation.

Plus…

Mechanisms of thymus organogenesis and morphogenesis

The thymic microenvironment supports T cell development and regeneration and, as reviewed by Gordon and Manley, recent studies have made significant progress in identifying the mechanisms that control the specification, early organogenesis and morphogenesis of the thymus. See the Review article on p. 3865

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PhD position in Inner Ear Development and Regeneration, UPF-PRBB

Posted by , on 17 August 2011

Closing Date: 15 March 2021

FGF and Retinoic Acid Signaling during development and regeneration

The inner ear is a highly complex sensory organ that allows us to communicate with the external world. Sensory information is captured by specialized sensory cells that emerge during development in a precise temporal and spatial order. This PhD project will address the question on how FGF and Retinoic Acid signals regulate the development and regeneration of sensory cells and how extrinsic signals are integrated at a molecular level. We use the zebrafish as model system to address these questions. You will be combining functional experiments through transgenic fish lines, in vivo imaging of progenitors and studies of regulatory regions by computational and ChIP experiments. The project provides multidisciplinary training using state-of-the-art techniques and you will therefore be well placed for a future career in biomedical sciences. The Department of Experimental Life Sciences at Universitat Pompeu Fabra is part a leading biomedical research center with an excellent international projection. The PRBB, located in front of the sea and highly international, will provide you with a young, dynamic and interacting atmosphere to ensure you opportunities to discuss and learn from experts in diverse fields. Applicants should have a BSc in biomedical science (or equivalent) and a MSc with strong academic record to apply to competitive PhD fellowships. Applicants should be highly motivated in the field of stem cell, developmental biology and regeneration and be familiar with developmental biology techniques. Basic knowledge of programming or zebrafish manipulation will be strongly encouraged. The position will be available from September-October 2011 for four years. Funding is available for the first year.

If interested please send your application (including CV and Master, BSc academic record) by e-mail to:

Berta Alsina, PhD
Laboratory Developmental Biology
Universitat Pompeu Fabra-PRBB
Dr. Aiguader 88, 08003 Barcelona
Phone: 34-93-3160837
berta.alsina@upf.edu
http://www.upf.edu/devbiol/projectes/Alsina_lab.html

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Embryonic stem cells – keeping a clean slate

Posted by , on 15 August 2011


Do your ears perk up when you hear about embryonic stem cells?  We all have heard and/or participated in the controversy surrounding the use of them, yet there is no debate over their biological importance and medical potential.  A paper in Journal of Cell Science describes the newly-indentified role for Banf1 in ESC self-renewal.

Embryonic stem cells (ESCs) maintain their pluripotent state through a complicated process called self-renewal.  Self-renewal of ESCs is dependent on three main regulators—Sox2, Oct4, and Nanog.  Recently, Cox and colleagues conducted a proteomic screen to find proteins that associate with Sox2, and identified the DNA-binding protein Banf1.  Banf1 was already known to play important roles in worm and fly development, yet its role in mammalian development was unclear.  Cox and colleagues found that Banf1 is required for mouse and human ESC self-renewal.  The use of RNAi to reduce Banf1 levels led to differentiation of mouse ESCs into mesoderm and trophectoderm cell lineages.  As seen in the images above, Banf1 knockdown (middle and right columns) caused cell to no longer have the characteristic pluripotent ESC morphology (left column).  Banf1-reduced cells were more flattened, had more membrane processes, and showed less staining for the pluripotent stem cell marker alkaline phosphatase (red, bottom row).  When investigating the specific mechanism likely affected by Banf1 knockdown, Cox and colleagues found that cell cycle distribution was altered in mouse and human ESCs – Banf1 knockdown resulted in a higher portion of cells in G2-M phase, and fewer cells in S-phase.

For a more general description of this image, see my imaging blog within EuroStemCell, the European stem cell portal.

ResearchBlogging.orgCox JL, Mallanna SK, Ormsbee BD, Desler M, Wiebe MS, & Rizzino A (2011). Banf1 is required to maintain the self-renewal of both mouse and human embryonic stem cells. Journal of cell science, 124 (Pt 15), 2654-65 PMID: 21750191

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The Wonder of Stem Cells

Posted by , on 12 August 2011

At the ISSCR meeting in Toronto in June I noticed this display at the top of the escalators:

These fabrics with patterns related to stem cells are part of an ongoing exhibition at Toronto’s Ontario Science Centre (OSC). In collaboration with the Stem Cell Network, the “Super Cells: The Wonder of Stem Cells” exhibit displays stem cell-inspired work by students from art schools across the city of Toronto.

At the museum itself, this is one of the works on display:

Stem Cell Fashion
(Image by Ricardipus on Flickr, used with permission. Click image for more info.)

The fashion aspect of the exhibit reminds me a bit of Primitive Streak, but Super Cells covers other art forms as well.

From the press release:

“This year marks the 50th anniversary of the discovery of stem cells by Canadian scientists Drs. James Till and Ernest McCulloch. “Till and McCulloch’s discovery in 1961 was unparalleled at the time and their findings continue to influence the field of stem cell research to this day,” said Drew Lyall, Executive Director of the Stem Cell Network. “This exhibition is a fitting tribute to their work, which took place here in Toronto.” “

In addition to the exhibit, the museum also organised Skype chats with stem cell researchers during the ISSCR meeting. Visitors to the science centre could ask delegates of the ISSCR meeting about their research via Skype. I didn’t get a chance to see this at the conference (so I don’t know who was interviewed), but the chats will hopefully be posted on the science centre’s YouTube channel.

Super Cells is at the Ontario Science Centre until October 2nd, 2011. If you’re in Toronto before then, take a look. The rest of the museum is really great as well!

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