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Wellcome Trust Conference on Mouse Molecular Genetics

Posted by , on 4 August 2011

For the past 24 years, the Mouse Molecular Genetics meeting has been a leading forum for researchers who apply the methods of genetics and genomics to fundamental problems in mammalian biology, including stem cell biology, early development, and models of human disease. In particular, the meeting showcases the latest technical developments in genetics and engineering of the mouse genome, and this year will feature a session devoted to imaging. The Mouse Molecular Genetics meeting assembles leaders in the field to present unpublished research findings, encourages junior investigators to participate in oral and poster presentations, and provides a stimulating environment for the exchange of ideas and information.

Sessions:
Epigenetics
Genetics and Genomics
Imaging
Models of Human Disease
Organogenesis
Patterning
Stem Cells and Germ Cells
Technology

Scientific Programme Committee:
Allan Bradley, Wellcome Trust Sanger Institute, UK
Kat Hadjantonakis, Sloan-Kettering Institute, USA
Haruhiko Koseki, RIKEN Research Center for Allergy and Immunology, Japan
Michael Shen, Columbia University Medical Center, USA

Keynote speakers:
Kathryn Anderson, Sloan Kettering Institute, USA
William Skarnes, Wellcome Trust Sanger Institute, UK

Speakers include:
David Adams, Wellcome Trust Sanger Institute, UK
Shinichi Aizawa, RIKEN CDB, Japan
Phil Avner, Institut Pasteur, France
Yann Barrandon, EPFL, Switzerland
David Beier, Harvard Medical School, USA
Richard Behringer, MD Anderson Cancer Center, USA
Shuomo Bhattacharya, University of Oxford, UK
Neal Copeland, Institute of Molecular and Cell Biology, Singapore
Xiaoxia Cui, Sigma-Aldrich Corp, USA
Elizabeth Fisher, UCL , UK
Scott Fraser, Beckman Institute, USA
Matthias Merkenschlager, MRC Clinical Sciences Centre, UK
Olivier Pourquie, Institute of Genetics and Molecular and Cellular Biology, France
James Sharpe, Centre for Genomic Regulation, Spain
Ludovic Vallier, Cambridge University, UK
Magda Zernicka-Goetz, The Gurdon Institute, UK

Conference Programme Information:
The conference will start on Tuesday, 20 September with registration at 14.00.
The conference will finish after lunch on Friday, 23 September 2011 at approximately 13.30.

https://registration.hinxton.wellcome.ac.uk/display_info.asp?id=258

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Adding events to the Node calendar

Posted by , on 4 August 2011

I’ve just added some 2012 conferences to the events calendar, and thought I’d give a quick reminder on how to add events here. If you have an account on the Node, you will have received these instructions when your account was approved. (And if you don’t have a Node account, you can get one here.)

When logged in, click “add/edit events” in the sidebar of the Node admin panel.

You’ll now get to the page where you can add an event. In the following picture, the numbers correspond to the list below:

1. Add name of event
2. Select both boxes (skip the first if there is no website)
3. Add start and end date of event
4. Add location
5. This is set to “conference” by default, but can be changed to “workshop” or “course”
6. Add website address

Don’t forget to save. Your event now appears on the events calendar!

If you want to share more detailed information about conferences (eg. if you’re organising one) you can write a post about it, but don’t forget to also add it to the calendar!

(Get these instructions as a pdf)

(NB – events that are not relevant to the developmental biology community, or commercial/sales events (such as product demos) will be removed from the calendar. If you’re not sure whether an event is suitable, you can contact us or leave a comment below.)

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International Developmental Biologists meeting 2012

Posted by , on 2 August 2011

ISDN2012 Neurodevelopment and Neurological diseases in Mumbai India.

http://www.isdn-conference.elsevier.com/

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An interview with Magdalena Götz

Posted by , on 1 August 2011

(This interview originally appeared in Development.)

Magdalena Götz is the Director of the Institute for Stem Cell Research at the Helmholtz Center and Professor at the Ludwig-Maximilians-University in Munich, Germany. Her developmental work in neurogenesis has identified radial glial cells as the source of neurons in the developing brain. Magdalena joined Development as Editor in 2010, and she agreed to be interviewed about her scientific inspirations and about finding a place for adult stem and progenitor cells within developmental biology.

When did you first become interested in science?

I have always loved biology, and in school I was truly inspired by my biology teacher. In our rather non-innovative school system, we had a young American biology teacher who made us actually think and do things, and I was simply fascinated.

What was your PhD about and how did it inform your subsequent career choices?

My PhD was on development of the cerebral cortex and investigated how specific cell types develop and form their specific connections. This work laid the basis for many research questions, which I continued to pursue into much later stages. For example, it led to the isolation of specific progenitor subtypes in order to understand stem cell and progenitor heterogeneity, and the molecular specification of these subtypes. The new questions that arose from my PhD project also determined how I chose my postdoc lab, and many of the basic questions from this time still keep us busy now.

Did you have a mentor or someone who inspired you in your early career?

After my inspiring biology teacher in school, my PhD supervisor, Jürgen Bolz, was also key in shaping my way. His readiness to discuss science at any time was certainly very important to further fuel my enthusiasm for understanding how the cerebral cortex develops. My interest in developmental biology was originally inspired by a course at the Max-Planck Institute for Developmental Biology in Tübingen and by the fascinating questions of axon growth and regeneration studied by Friedrich Bonhoeffer and Claudia Stürmer.

Typically, I have always been inspired by people we call `Querdenker’ in German – i.e. people whose thoughts and ideas are contrary to common beliefs and who follow their own ideas entirely independent of the field. Therefore, people like Nils Birbaumer in Tübingen and Rüdiger Wehner in Zürich were important for me to see that following your own way and ideas is the way to go.

(more…)

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Squid

Posted by , on 29 July 2011

The winner of the fourth round of Development cover images, collecting more than half of the total votes, was this squid embryo image, taken by Amber O’Connor from the University of Alabama at Birmingham.

Runners-up in this round of images (all taken by participants of the Woods Hole Embryology course in 2010) were a fly image by Sylvia Bonilla (Purdue University) and Mazdak Lachidan (Samuel Lunenfeld Research Institute, Toronto), a mouse image by Elsa Denker (Sars International Centre for Marine Molecular Biology, Bergen) and a Ciona image by Qinwen Liu (University of Maryland, College Park) and Xinwei Cao (St. Jude’s Children’s Research Hospital).

Amber’s image will be on the cover of Development some time in the coming months. Meanwhile, you can download another squid as your August desktop:

The desktop calendar for August, is now up, featuring the runner-up from the first Development cover image voting round of images taken at the 2010 Woods Hole Embryology course. It shows a squid embryo with DAPI staining in blue and phalloidin in red. The image was taken by Jennifer Hohagen of Georg-August-Universitaet in Göttingen.

Visit the calendar page to select the resolution you need for your screen. The page will be updated at the end of each month with a new image, and all images are chosen from either the intersection image contest or from the images we’ve featured from the Woods Hole Embryology 2010 course.

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Post-doc position: Canada

Posted by , on 28 July 2011

Closing Date: 15 March 2021

I currently have an opening in my research group for a post-doc to investigate the development of the vertebrate skeleton.  Our lab studies the development of the neural crest derived skeleton in a comparative manner in chicken and fish embryos (zebrafish and Mexican tetra).   This position will focus on the signals involved in the patterning of skeletal elements in one or more of these animals and the interactions between neural crest and mesodermal tissues.  Applicants who have recently completed a PhD, have experience in molecular biology, developmental and cell biology are strongly encouraged to apply.  

MSVU is an undergraduate university on the East Coast of Canada in beautiful Nova Scotia.  Although a small university, I have a large research group.  This position offers opportunities to interact with a growing research group of undergraduates and graduate students in a well equipped CFI funded lab.  In addition, opportunities to teach, train undergraduates/graduate students and to help manage my lab will be available.  

If you want to hone your teaching and management skills, as well as engage in exciting research then this position might be for you!  Please email a CV, a one page statement of your research experience and interests, and the contact information for three referees to:

Dr Tamara Franz-Odendaal    Tamara.franz-odendaal@msvu.caBiology Dept, Mount Saint Vincent University,

166 Bedford Highway, Halifax, Nova Scotia, B3M 3E4,CANADA

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Live imaging of stem cell maintenance, loss, and renewal in the Drosophila testis

Posted by , on 28 July 2011

Stem cells have often been imaged live in culture, but very few stem cell systems are conducive to live imaging within their native tissues.  An essential property of adult stem cells that they are maintained at specific anatomical locations called niches.  The interactions between stem cells and their niche are crucial, but are often disrupted when stem cells are studied in vitro.  In our recent Development paper, we use live imaging to directly watch male Drosophila germline stem cells (GSCs) in action within their native niche by ex-vivo imaging of intact testes.  We find that while wild type GSC divisions usually result in the production of a stem cell and daughter cell, they occasionally produce two stem cells or two daughter cells.  Our findings highlight a flexibility in stem cell output that is modulated during regeneration similar to mouse spermatogonial stem cells (Nakagawa et al., 2007, Nakagawa et al., 2010).

Niches are usually composed of stromal cells that activate developmental signaling pathways in nearby stem cells, thus maintaining them in an undifferentiated state.  The cluster of non-dividing stromal cells to which germline and somatic stem cells in the Drosophila testis apex are attached is appropriately called the “hub” and secretes cytokines required for the maintenance of both stem cell populations.  Cells adjacent to the hub have activated Jak-STAT signaling, and remain undifferentiated.  Cells further away from the hub initiate differentiation and eventually form sperm.

After running into similar issues as what Lucy Morris described in her previous post, we developed a live imaging protocol using either spinning-disk or 2-photon microscopy that enabled us to image stem cells within intact testes for up to 12 hours – about half of the GSC cell cycle.  By manually tracking individual stem cells and their daughter cells, we saw the most GSCs divide with a stereotypical spindle orientation perpendicular to the hub, thus displacing daughter cells out of the niche.  This phenomenon had been seen many times previously in immunostained, fixed testes and in testes studied by short-term live imaging, and had been the only observed mode of GSC divisions (Yamashita et al., 2003).  Surprisingly, in wild type young testes, we saw a few cases where GSCs, after first displacing their daughter cells away from hub, then swiveled such that the daughter cell gained and maintained contact with the hub until the end of imaging.  This suggested that GSCs can switch from their normal mode of division where one GSC and one daughter cell re produced, to one where two GSCs are produced.  We also saw the converse, where GSCs-daughter pairs lost contact with the hub and appeared to directly differentiate into a pair of spermatogonia.  Thus, our live imaging captured three different modes of division – asymmetric division, symmetric renewal, and symmetric differentiation – that occur simultaneously within a stem cell niche to balance its output during steady-state (click here to see a movie of this!).

By using the same imaging technique, we were able to look at cells undergoing the process of dedifferentiation, where a more differentiated cell reverts into a less differentiated cell or stem cell.  Our lab previously demonstrated that spermatogonia (transit-amplifying stem cell daughters) are able to revert into stem cells when they encounter a niche depleted of stem cells (Brawley and Matunis, 2004).  While examining dedifferentiation, we stumbled upon a scenario where we thought that the normally immobile spermatogonia were able to move towards the hub in order to gain physical contact with the hub before reverting into stem cells.  Whether the cells were gaining a migratory morphology during the process was unknown.  While we never attained a satisfactory answer to whether Drosophila spermatogonia gain intrinsic migratory properties, we saw many examples of spermatogonia initially not in contact with the hub gain (click here to see a movie of this).  The caveat is that we were not able to image the somatic cells within the niche, and these somatic cells could easily be shuttling the dedifferentiating spermatogonia in a manner similar to that of escort stem cells in the Drosophila ovary (Morris and Spradling, 2011).  We also noticed that the modes of GSC divisions changed greatly from that seen during steady-state (movie of this too!).  The balance of the different modes of stem cell division was now tipped to that of producing more GSCs in an effort to replenish the niche.

Our findings that stem cells are frequently replaced and regenerated in the Drosophila testis are in line with recent studies in mammalian tissues using lineage tracing and mathematical modeling of clone behavior.  These studies suggest that the classical stem cell definition of a long-lived, slow cycling cell may no longer be accurate.  While this view has yet to be challenged in the mammalian hematopoietic system, it has been demonstrated recently that mammalian gut, interfollicular epidermis, and testes all contain stem cells that not only undergo turnover on the scale of weeks, but also divide frequently (reviewed in Klein and Simmons, 2011).  I believe that more and more stem cell systems will be demonstrated to have these properties, and that diseases such as cancer may eventually be similarly modeled.

ResearchBlogging.orgSheng, X., & Matunis, E. (2011). Live imaging of the Drosophila spermatogonial stem cell niche reveals novel mechanisms regulating germline stem cell output Development, 138 (16), 3367-3376 DOI: 10.1242/dev.065797

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From the Embryology 2011 Class: 4th of July Parade

Posted by , on 26 July 2011

Because Woods Hole, MA is home to both an Oceanographic Institute and the Marine Biological Laboratory, most of the people in this small town have some connection to the scientific community. As a result, the fourth of July festival in Woods Hole, MA is a celebration of uninhibited science-geekery.

Some of the highlights included the neurobiology students:

Microbial diversity, with their giant squid:

And my personal favorite, Mendel with his peas:

Bringing up the rear was our own Embryology course.  We have a time-honored tradition of performing gastrulation through interpretive dance, which is quite possibly the best way to show gastrulation:

If that wasn’t self explanatory, let me help.

The three different colors of our shirts represent the three germ layers: blue for ectoderm, red for mesoderm, yellow for endoderm.  In this particular display, we are performing gastrulation as it occurs in the sea urchin (that was obvious, right?) We started out as a blastula (a hollow ball of cells), and then invaginated to create the three layers of tissue. Finally, some of the mesoderm cells start to form spicules, which create the skeleton of the urchin.

Sea urchins were only the beginning. We also performed gastrulation as it occurs in frogs, nematode worms, fruit flies, as well as chaotic cleavage (like you find in some sea anemones and jellyfish) and chicken neurulation for good measure.  The parade lasted less than an hour, and only traveled a few blocks, but we got as many gastrulations as we could in there.

If you’re ever in the area during the fourth of July, I highly recommend you check out the Woods Hole parade.  Their were a lot of people, and a lot of energy (including an epic water gun fight).  You can get a more detailed explanation of gastrulation and some more pictures over at the blog BioBlueprints.

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In Development this week (Vol. 138, Issue 16)

Posted by , on 26 July 2011

Here are the research highlights from the current issue of Development:

Pushing the nuclear envelope

Not all nuclei are regular spheres as is often shown in textbooks. For example, in Drosophila embryos, nuclei are initially spherical but they elongate and acquire an irregular lobulated morphology during cellularisation. These morphological changes coincide with transcriptional activation of the zygotic genome and reflect poorly understood changes in nuclear envelope (NE) mechanics. Here (see p. 3377), Thomas Lecuit and co-workers provide new insights into NE morphogenesis in early Drosophila embryos. Microtubule (MT) polymerisation events produce the forces necessary for NE dynamics, they report, and the large-scale NE deformations associated with lobulation require both a concentration of MT polymerisation in bundles that are organised by dynein and the presence of the farnesylated inner nuclear membrane protein Kugelkern. The researchers also show that MT-induced NE deformations control the dynamics of chromatin and its organisation at steady state. They suggest, therefore, that the mechanical regulation of chromatin dynamics by MT-induced NE fluctuations might be important for gene regulation in Drosophila embryos.

Many roads lead to stem cell renewal

Tissue maintenance relies on adult stem cells that both self-renew and produce differentiating progeny in specialised niches. But stem cells are not immortal, so how are lost stem cells replaced? On p. 3367, Rebecca Sheng and Erika Matunis use extended live imaging of the Drosophila testis niche to investigate this question. Germline stem cells (GSCs) in the Drosophila testis are attached to somatic hub cells and divide asymmetrically to produce a stem cell that remains attached to the hub and a daughter cell that is displaced away from the hub. Unexpectedly, Sheng and Matunis show that ‘symmetric renewal’, a process in which GSC daughter cell pairs swivel so that both cells contact the hub, generates new GSCs in the testis niche. Moreover, after severe genetically induced GSC loss, the rate of symmetric renewal increases and, in addition, spermatogonia de-differentiate. Thus, asymmetric stem cell divisions do not always lead to an asymmetric cell fate, and lost stem cells can be regenerated by multiple mechanisms.

CaMK-II: the missing link in kidney development

Ca2+ signalling influences many processes during early development, including organogenesis, but the pathways through which intracellular Ca2+ acts remain elusive. On p. 3387, Rob Tombes and colleagues show that, during pronephric kidney development in zebrafish, the conserved calmodulin-dependent protein kinase CaMK-II is an effector of the Ca2+ channel PKD2 (a polycystin that is mutated in the ciliopathy autosomal dominant polycystic kidney disease, ADPKD). The researchers show that activated CaMK-II is present during early zebrafish development in the pronephric kidney and in other ciliated tissues. Pronephric duct formation fails in both PKD2-deficient and CaMK-II-deficient embryos, they report, and both types of embryo develop kidney cysts and have destabilised cloacal cilia. Importantly, PKD2 suppression inactivates CaMK-II in pronephric cells and cilia, whereas constitutively active CaMK-II restores pronephric duct formation in PKD2-deficient embryos. The researchers conclude that CaMK-II is a crucial PKD2 target that promotes pronephric kidney development and stabilises primary cloacal cilia, and suggest that CaMK-II could provide a therapeutic target for ADPKD and other ciliopathies.

Hear, hear: Kif3a and auditory hair cell polarisation

In the mammalian cochlea, V-shaped hair bundles (rows of actin-based stereocilia) on sensory hair cells convert sound energy into electrical signals. The hair cells display uniform planar polarity, which is necessary for correct sound perception and is controlled by non-canonical Wnt/planar cell polarity (PCP) signalling at the tissue level. But how is the V-shape of hair bundles established? On p. 3441, Conor Sipe and Xiaowei Lu report that the microtubule motor subunit Kif3a regulates hair cell planar polarisation in mice through both ciliary and non-ciliary mechanisms. They show that Kif3a disruption in the inner ear leads to the absence of the kinocilium (a specialised primary cilium), flattened hair bundle morphology and uncoupling of hair bundle orientation from basal body positioning. Moreover, they report, Kif3a coordinates the planar polarity of hair bundles and hair cell centrioles through localised p21-activated kinase (PAK) activation on the hair cell cortex. These results suggest that Kif3-mediated hair cell intrinsic polarity pathways and PCP signalling converge on PAK to regulate hair cell polarity.

Fishing for ways to mend broken hearts

In heart failure, which is characterised by exercise intolerance, shortness of breath and oedema, the heart muscle is unable to pump a sufficient blood supply around the body. Cardiac muscle regeneration might thus restore function to a failing heart but how can cardiomyocyte regeneration be achieved? A zebrafish model of cardiac injury developed by Kenneth Poss and colleagues (see p. 3421) could provide valuable clues. It is known that adult zebrafish can regenerate cardiac muscle after surgical removal of about 20% of the ventricle. To study heart regeneration after larger injuries, the researchers created transgenic zebrafish in which destruction of more than 60% of the ventricular myocardium can be genetically induced. This massive myocardial loss triggers exercise intolerance in the fish, they report, but is completely reversed within 30 days through de-differentiation and proliferation of surviving cardiomyocytes. This new model of heart injury can now be used to understand why heart regeneration occurs in zebrafish – information that might help efforts to reverse human heart failure.

INCENP goes to seed

In plants, gametes and the accessory cells that support them are formed from haploid gametophytes during a tightly regulated developmental program that involves cell division, cell specification and cell differentiation. Now, on p. 3409, Ueli Grossniklaus and colleagues report that WYRD (WYR), which encodes a putative plant ortholog of the inner centromere protein (INCENP, a protein that controls chromosome segregation and cytokinesis in yeasts and animals), is required for cell specification in the female gametophyte and for seed development in Arabidopsis. The wyr mutant, which was identified in a screen for mutations affecting egg cell differentiation, produces additional egg cells at the expense of accessory cells. Disruption of WYR, the researchers report, also affects mitotic divisions in the male gametophyte (pollen) and the endosperm, and has a parental effect on embryo cytokinesis, which suggests that WYR is involved in cell-cycle regulation. Finally, WYR expression is upregulated in gametic cells. Together, these results reveal a new developmental function for the conserved cell-cycle-associated INCENP protein in plant reproduction.

Plus…

The mammalian target of rapamycin (mTOR) responds to an array of signals to regulate cell metabolism and growth. Recent studies, reviewed by Guan and colleagues, highlight a role for mTOR signaling in metabolically sensitive tissues and in stem cells.
See the Review article on p. 3343.

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Top Developmental Biologists meet in Chile for a laboratory and lecture course: open to Latin American and International applicants

Posted by , on 25 July 2011

Eric Wieschaus , John Gurdon, Claudio Stern, Alejandro Sanchez-Alvarado, among others, will teach, hands-on, the paradigms, problems and technologies of modern Developmental Biology.  The course will take place in the beautiful fishing village of Quintay, at the Centre for Marine Biological Research (CIMARQ).   

The course is intended primarily for Latin American student but it is also open to no-Latin American applicants. We believe that the interaction between the students will establish links and promote a culture of international collaboration that will further contribute to the field.

More information about the course in:

http://biodesarrollo.unab.cl/

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