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Postdoc Associate development and evolution of morphologies Rutgers University

Posted by , on 21 November 2020

Closing Date: 15 March 2021

An NSF-supported postdoctoral position is available in the Yakoby Lab https://yakoby.rutgers.edu/ for a highly-motivated and productive individual with an interest in studying the evolution of tissue patterning and morphogenesis in Drosophila oogenesis. The project includes the prediction and validation of cis-Regulatory Modules (CRMs) in the follicular epithelium of several Drosophila species. Applicants with a Ph.D. and a strong background in molecular biology, including the use of CRISPR/Cas9, genetics, and bioinformatics are encouraged to apply. Interested individuals should send a CV, a short statement of research interests, and three names of references to <yakoby@camden.rutgers.edu>. The Yakoby Lab https://yakoby.camden.rutgers.edu/ is in the Biology Department https://biology.camden.rutgers.edu/ and the Center for Computational and Integrative Biology https://ccib.camden.rutgers.edu/ at Rutgers University Camden campus located in the Greater Philadelphia Area.

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POSTDOCTORAL POSITION OFFERED

Posted by , on 20 November 2020

Closing Date: 15 March 2021

We are seeking candidates to apply for two upcoming calls for Postdoctoral Researchers from the Spanish Government (Juan de la Cierva).

Candidates should have an interest in Developmental Neurobiology, with expertise ranging from embryology, to stem cell biology, bioinformatics and/or quantitative biology to investigate development of the vertebrate Central Nervous System (CNS) in health and disease. Candidates must have a competitive publication records, since both are competitive open calls.

Candidate will join the Elisa Martí Laboratory (IBMB-CSIC, Barcelona). Please contact Elisa directly emgbmc@ibmb.csic.es the sooner the better (calls are about to open)

 

Relevant recent publications from the lab

Murielle Saade and cols Cell Stem Cell 2020 Oct 27; doi: 10.1016/j.stem.2020.10.002.

Gwenvael Le Dréau, and cols Elife 2018 Aug 10;7. pii: e37267. doi: 10.7554/eLife.37267

Murielle Saade, and cols Nature Cell Biology 2017 19, 493–503 doi:10.1038/ncb3512

Gwenvael Le Dréau, and cols J Cell Biol.  2014 204 (4) 591-605)  doi: 10.1083/jcb.201307031

Murielle Saade, and cols Cell Reports 2013 4(3):492-503. doi: 10.1016/j.celrep.2013.06.038.

Visit our webpage for more information

https://www.ibmb.csic.es/en/department-of-developmental-biology-ddb/development-of-spinal-cord-in-health-and-disease/

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Paul S. Burgoyne (1946-2020)

Posted by , on 18 November 2020

This Obituary by James M. A. Turner, Shantha K. Mahadevaiah, Arthur P. Arnold and Robin Lovell-Badge was recently published in Development

 

 

Paul Burgoyne was an outstanding mouse geneticist and developmental biologist who made fundamental discoveries about the sex chromosomes and their biology. He was born on 10th January 1946, spending most of his childhood living in Dartmoor on a farm with his parents, who were Quakers. The farm was a busy and culturally diverse environment, co-run by a second family (the Haines) and providing residence to foreign students who visited through the International Scholastic Correspondence, an organisation that brought together youngsters from different countries to foster better understanding in the post-war period. Paul considered several academic and non-academic career options, including a farmer, a vet and, at one point, a pilot; the last option he eventually rejected due to a tendency for airsickness. Encouraged by his parents and teachers, he continued to higher education, studying botany and zoology at Portsmouth University. His meticulous and precise approach to science was noted by his college tutor, who persuaded him to take up a technician position at Edinburgh University with Alan Beatty, reproductive biologist and PhD supervisor to the Nobel Prize winner and ‘test-tube baby’ pioneer Robert Edwards. Paul remained in the Beatty lab for his PhD, working on sperm morphology. He loved playing cards, and regularly attended the lunchtime whist club. It was there that he met his beloved wife Kathy, a computer scientist who later helped him analyse his cytological data.

In 1973, Paul moved with Kathy to the USA, where he did a postdoc with John Biggers at Harvard University. During this time, Paul’s interest in sex chromosomes was first piqued, when he discovered that female embryos lacking one X chromosome exhibit impaired development in vitro. Among the highlights of this 3 year stay in the USA was a summer placement at the Jackson labs, where he worked with Wes Whitten, discoverer of the Whitten effect (that male pheromones can stimulate simultaneous oestrus in females), and enjoyed afternoons swimming in the lake. Paul subsequently returned to Edinburgh University to work with Ted Baker, during which period he demonstrated that two X chromosomes are necessary for the development of eggs. He was subsequently invited by eminent developmental biologist Dame Anne McLaren in 1979 to the newly formed MRC Mammalian Development Unit in London. Anne was a huge influence on Paul and was a personal and scientific role model for him. But Anne was equally devoted to Paul; she was delighted when he came to her unit and with the research he did there, and was equally excited about his accomplishments after this.

During his period at the MRC Mammalian Development Unit, and later when he moved (in 1992) to the MRC National Institute for Medical Research in London, Paul made discoveries in sex chromosome biology that have become memorialised in textbooks. He dominated the field of mouse Y chromosome biology, using a diverse array of mouse mutants carrying what he referred to as ‘weird sex chromosomes’ to dissect the function of Y genes in fertility. He was fascinated by meiosis, the point in germ cell development when homologous chromosomes pair and form crossovers. He correctly predicted that the X and Y chromosomes, thought initially to be genetically dissimilar, shared a region of homology through which they exchange genetic information. He named this the ‘pseudoautosomal region’ (PAR), and demonstrated that defective genetic exchange in the PAR was the principle cause of infertility in male mice with abnormal sex chromosomes. His group demonstrated that DNA double-strand breaks, the substrates of genetic exchange, are formed much earlier in meiosis than previously believed, and discovered a novel epigenetic phenomenon, meiotic silencing, in which chromosomes failing to pair are transcriptionally silenced. These studies, marvelled at for their beautiful cytology, revealed to us the intricate surveillance mechanisms that operate in the germ line to ensure that offspring inherit the correct number of chromosomes. Throughout his life, Paul was deeply concerned about overpopulation, and the irony that he worked on infertility was not lost on himself or his friends!

Paul’s love of sex chromosomes also led him beyond reproductive biology, and in a series of papers, most of them published in his favourite journal Development, he made landmark discoveries in sex determination, embryology and sex differences. He found that in chimeric XX-XY mice, most testis cell types could be either XX or XY, but Sertoli cells were exclusively XY. This elegant experiment revealed that the testis-determining factor, not yet identified by the Lovell-Badge and Goodfellow labs as Sry, acted cell-autonomously in Sertoli cell precursors. This became an important criterion to reject or pursue candidates for the gene. He showed that sex chromosomes control the rate of embryonic growth, with a Y chromosome speeding up and a paternal X chromosome slowing down development of the preimplantation mouse embryo. With Art Arnold and Robin Lovell-Badge, he designed and validated a method called the ‘four-core genotypes cross’ that allowed the effects of sex chromosome make-up and gonadal hormones to be uncoupled. Before this point, the impact of sex chromosomes on male-female differences was underappreciated, and it wasn’t until 2014 that the National Institutes of Health mandated the use of both male and females in research studies on animals. The four-core genotypes cross is now a mainstay of research across the globe, revealing how sex chromosomes impact diverse diseases, including autoimmunity, metabolic syndrome, Alzheimer’s and hypertension.

Paul maintained a small research group and was hands-on with respect to science, especially mouse work. He expected to find his trainees in the mouse rooms, peering into cages so that they wouldn’t miss phenotypes. He made twice-weekly visits to the animal house, where he spent the entire afternoon meticulously assessing each of the 70 or so sex-chromosome variant mouse lines. His desire to work on a farm, in close contact with animals, may have motivated this close connection with his mice. Even during a 10-year period when he had become very allergic to mice, he would still trot off to the animal room, looking like an astronaut, with a full face mask and HEPA-filtered air supply. It was during his mouse-room visits that his enthusiasm and genetics prowess were most evident. He would recite complex genetic crosses effortlessly, regaling those shadowing him with witty anecdotes from his life as a trainee. His karyotype preparations were always more beautiful than everyone else’s, and he took great relaxation from sitting in his office, counting chromosomes on his Olympus microscope, a cup of tea by his side and classical music on the radio. He was utterly captivating during scientific presentations, leaving even the most learned geneticists in awe.

Paul was a guileless and modest man who never realised how brilliant or deified he was. He preferred instead to focus on the success of his junior scientists, many of whom now run research groups. He was elected to the Academy of Medical Sciences, but otherwise eschewed formal recognition. To him, research was simply another of his many hobbies, like gardening, hiking, DIY and badminton, all of which he was enviably good at.

Paul is survived by his wife Kathy, daughter Jacqueline, and sons Robert and Thomas.

 

Acknowledgements

We are grateful to Kathy Burgoyne and Paul’s scientific colleagues for sharing information on which this obituary is based.

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Postdoc opportunity in Morphogenesis & Developmental Mechanobiology

Posted by , on 17 November 2020

Closing Date: 15 March 2021


The Nerurkar Lab is looking for Postdoctoral Researchers with an interest in the interplay between molecular and mechanical aspects of vertebrate morphogenesis. Using the chick embryo, we
combine live in vivo imaging, embryology and molecular genetics with engineering and physics approaches to study how developmental signals modulate physical forces that shape the embryo,
and how forces in turn feedback on tissue growth and stem cell differentiation. Projects include early morphogenesis and patterning of the gut tube and brain, and organogenesis of the small intestine. Applicants must hold a PhD in molecular biology, development, bioengineering, or related field. Biologists with a strong developmental biology and embryology backgrounds and an interest in building expertise in biophysical and quantitative approaches are particularly encouraged to apply. Part of the Department of Biomedical Engineering at Columbia University, the Nerurkar Lab is located on the Morningside Heights campus of Columbia University in the City of New York. An academic reflection of New York’s excitement and creativity, Columbia offers a rich research environment, with boundless opportunities for collaboration with experts across engineering, biology, and clinical/translational disciplines. Interested applicants should contact Nandan Nerurkar at nln2113@columbia.edu.

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Postdoctoral Fellowship Opportunities to Study Gene Regulatory Dynamics in induced Pluripotent Stem Cells (iPSCs)

Posted by , on 16 November 2020

Closing Date: 15 March 2021

The National Institute of Standards and Technology (N.I.S.T.) is recruiting recent PhD’s. The laboratory is located near Washington, DC. Our research program focuses on characterizing the dynamics of gene regulatory networks in human iPSCs and in developing quantitative models that describe the pluripotency landscape. Possible start dates: 6/2021 – 12/2021

 

We invite interested candidates to apply for Postdoctoral Research Fellowships available through the National Research Council (NRC). These research associateships are two-year appointments with an annual salary of $71,128 (U.S. citizenship is a requirement). These positions are highly competitive and attract outstanding candidates. Research challenges include:

  • applying state-of-the-art live cell imaging and image analysis and deep learning models to follow gene expression dynamics in single cells
  • gene editing (i.e. CRISPR-Cas9) to engineer iPSC lines with multiple fluorescent reporters
  • statistical analysis of time series data to infer gene network interactions
  • modeling pluripotency regulation

Experience with cell culture, quantitative imaging and image analysis, and/or mathematical modeling is a plus.  These postdoc appointments are excellent opportunities for recent Ph.D. graduates who are seeking additional experience prior to accepting a permanent academic or industrial position. Historically, a number of these awardees have also become permanent employees at NIST. Next application deadline is February 1.

 

Begin the application process by sending your CV and cover letter to Michael Halter (michael.halter@nist.gov).

 

Job requirements:

-US citizenship

-Within 5 years of obtaining PhD in bioengineering, cell biology, or physical sciences

-PhD is not required at time of application, but is required before beginning Fellowship

-Ability to work in a multidisciplinary team with biologists, bioengineers, computer scientists, physicists, and statisticians

 

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Vascular control of heart development and regeneration: PhD and Postdoc positions available

Posted by , on 16 November 2020

Closing Date: 31 July 2021

The Marín-Juez laboratory, at the CHU Sainte-Justine Research Center,is recruiting a PhD student and a postdoctoral fellow (4-year fully funded positions). Our laboratory is interested in the cellular and molecular mechanisms regulating cardiac regeneration. The successful applicant will join the Marín-Juez laboratory at the CHU Sainte-Justine Research Center, where he/she will have access to state-of-the-art facilities and technology platforms including Advance imaging platform (light-sheet, spinning-disc confocal, multiphoton, STED super-resolution, etc.), genomics (DropSeq, 10x, Illumina Novaseq) and bioinformatics platforms. CHU Sainte-Justine Research Center provides a thriving scientific environment where the successful applicant will have the opportunity to work with multidisciplinary scientific teams and to collaborate with talented clinicians and researchers.

Research project description

For this project, we are particularly interested in understanding how the cardiac endothelium regulates different aspects of cardiac regeneration and how alterations in the coronary network formation impact the ability of coronary vessels to support tissue replenishment. We have recently found early coronary regeneration as a key determinant of heart regeneration (Marín-Juez et al., PNAS 2016), and identified mechanisms regulating coronary network replenishment to form a vascular scaffold that supports cardiomyocyte regeneration (Marín-Juez et al., Dev Cell 2019). We now seek to define how the different components of the cardiac endothelium regulate tissue replenishment and identify the different mechanisms involved in their regulation of CM proliferation and migration.

Required training and profile

Ph.D. student position: Applicants should have training in vascular biology, molecular biology, cell biology, or related fields. Suitable candidates should be enthusiastic about regenerative and vascular biology. Previous research experience with zebrafish and/or heart regeneration is desired.

Postdoctoral position: We are looking for candidates with a Ph.D. in the biological sciences and laboratory experience in tissue repair/regeneration, cellular, molecular biology, or genetics. Previous experience working with zebrafish, imaging and histology are highly valued but not essential.

Both positions: Candidates with experience in confocal/light-sheet imaging and/or genome engineering are strongly encouraged to apply. Preference will be given to applicants with excellent collaborative and communication skills. The Marín-Juez lab and the CHU Sainte-Justine Research Center subscribe to the principle of equal access to opportunities and encourage women, members of visible and ethnic minorities, persons with disabilities and Indigenous people to apply.

Submit your application

Candidates must send the required documents before 02/2021 to Rubén Marín Juez at ruben.marin.juez.hsj@ssss.gouv.qc.ca

Please provide: Curriculum vitæ, Cover letter and References (2 or 3).

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Fully funded PhD project in Cell and Developmental Biology at Tel Aviv University

Posted by , on 14 November 2020

Closing Date: 15 March 2021

PhD or postdoc project at the Zaidel-Bar lab: A systematic analysis of C. elegans gastrulation in order to uncover molecular mechanisms of cell ingression.

Information about the lab: https://www.zaidelbarlab.com/

Application: Send CV, transcripts and cover letter to zaidelbar@tauex.tau.ac.il

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Postdoctoral position in Stem Cell Biology/Cell therapy

Posted by , on 13 November 2020

Closing Date: 15 March 2021

We are currently seeking an independent and motivated research associate to work on a research project led by Dr. Anestis Tsakiridis (https://www.tsakiridislab.com/) and Prof. Peter Andrews at the Centre for Stem Cell Biology, University of Sheffield, UK. The successful applicant will work on the characterisation of candidate human pluripotent stem cell (hPSC)-derived enteric nervous system (ENS) progenitor
populations for use in cell therapy approaches to treat Hirschsprung disease (HSCR), one of the most common congenital diseases affecting the ENS. This project is funded by the MRC and is a collaboration with the group of Conor McCann/Nikhil Thapar at the UCL Great Ormond Street Institute of Child Health in London.

You should have a PhD (or be close to completion/have equivalent experience) in Stem Cell/Developmental Biology and have experience in hPSC culture and neural differentiation as well as in one or more of the following: immunocytochemistry, qPCR, flow cytometry, and Crispr/Cas9 based genetic modification approaches. You must be self-motivated, well-organised, highly independent, and willing to work with other members of the existing research team. Excellent communication, written and interpersonal skills are essential.

We are keen to attract a diverse applicant pool, and we are aware that some under-represented groups are typically less confident about applying for jobs unless they are sure they comfortably meet all the criteria. With this in mind, we encourage
all potential candidates to reflect on their strengths and experience in the broadest sense, including transferable skills where appropriate, when considering their suitability for the position.

We build teams of people from different heritages and lifestyles from across the world, whose talent and contributions complement each other to greatest effect. We believe diversity in all its forms delivers greater impact through research,
teaching and student experience.

We’re one of the best not-for-profit organisations to work for in the UK. The University’s Total Reward Package includes a competitive salary, a generous Pension Scheme and annual leave entitlement, as well as access to a range of learning and
development courses to support your personal and professional development

Closing date: 9th December 2020. Please apply here (Job  reference: UOS026765). For informal enquiries email: a.tsakiridis@sheffield.ac.uk

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Postdoctoral position in developmental epigenetics

Posted by , on 13 November 2020

Closing Date: 15 March 2021

We are looking for an ambitious Postdoctoral Research Scholar to join the Developmental Epigenetics and the Environment Lab led by Dr Michael Cowley at North Carolina State University. The goals of the Cowley Lab are to understand how the developmental environment impacts the epigenetic regulation of the genome, and to understand the consequences of this for development and metabolic health. Our work sits at the interface of genetics, developmental biology and environmental health science.

Recent work in the Cowley Lab has identified a novel function for imprinted genes – defined by their expression from a single parental allele – in programming metabolic disease susceptibility (manuscripts in preparation). Specifically, we have demonstrated that a coordinately regulated transcriptional network of imprinted genes programs non-alcoholic fatty liver disease (NAFLD) in response to an adverse developmental environment. NAFLD is one of the most prevalent liver diseases in the world. The Postdoctoral Research Scholar will conduct original research to understand the epigenetic mechanisms that regulate this imprinted gene network and understand how these are modulated by environmental factors, including diet and toxicants. The Research Scholar will also seek to determine the molecular and cellular pathways through which altered imprinted gene expression causes disease. We were recently awarded a 5-year NIH R01 to support this work.

The Research Scholar will develop hypotheses, design studies, perform experiments, analyze and interpret data, and write manuscripts for peer review. The project will integrate data acquired through the use of a wide range of tools and techniques including, but not limited to, transgenic mouse models, primary cell culture systems, in situ hybridization, DNA methylation analyses, chromatin immunoprecipitation coupled to high throughput sequencing (ChIP-seq), transcriptomics, western blotting, histology and whole organism physiology.

The Research Scholar will be expected to contribute to the training of students and to make intellectual contributions to other ongoing projects in the lab. Other responsibilities will include: contributing to laboratory organization and management, contributing to the preparation of grants to secure further funding for the lab, presenting data at scientific conferences, and participating in career development workshops and activities. The Research Scholar will be encouraged to submit applications for postdoctoral fellowship awards.

The Postdoctoral Research Scholar must have:

  • a PhD in biology or a related subject
  • experience of research in at least one of the following fields
    • genetics
    • epigenetics
    • developmental biology
    • metabolism
    • toxicology

The following are highly desirable:

  • evidence of relevant experience in the form of peer-reviewed published manuscripts and presentations at appropriate conferences
  • expertise in molecular biology (particularly techniques relevant to epigenetics and gene transcription), cell culture, histology and physiology.

The Cowley Lab, based in the Department of Biological Sciences at NC State University, benefits from affiliations with the well-established and research-intensive Programs in Genetics and Toxicology, as well as the Center for Human Health and the Environment (CHHE), one of only 23 NIEHS-funded Core Centers in the US. The aim of CHHE is to understand how human health, at both the individual and population level, is impacted by environmental factors and to implement this knowledge to prevent and reduce the adverse impacts of environmental factors on human health. Through CHHE, the Cowley Lab benefits from a pilot project program and access to core services, including the Systems Technologies Core (proteomics, metabolomics, metallomics and genomics along with dedicated bioinformatics support), the Comparative Pathology Core and the Integrative Health Sciences Facility Core (to facilitate translation of basic research). Together, these affiliations provide the Research Scholar with a network of potential collaborators and training opportunities.

Inclusiveness and diversity are critical to the success of the Department of Biological Sciences, CHHE and the University. The selected candidate will be expected to foster an environment that is supportive and welcoming of all groups.

Further information on current projects in the Cowley Lab can be found on our website: www.cowleylab.org.

To apply, please visit https://jobs.ncsu.edu/postings/136866.

 

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Special Issue of Development on The Origins and Mechanisms of Developmental Disorders

Posted by , on 13 November 2020

Development is excited to announce the completion of our Special Issue on The Origins and Mechanisms of Developmental Disorders, guest edited by Sally Dunwoodie (Victor Chang Cardiac Research Institute in Sydney) and John Wallingford (University of Texas in Austin).

 

The Special Issue’s cover comes from Helen Rankin Willsey and colleagues. Dorsal view of the nervous system of a Xenopus tropicalis tadpole following β-tubulin antibody staining and confocal microscopy. X. tropicalis is a valuable model for understanding the function of human neurodevelopmental risk disorder genes due to its conserved diploid genome, the ability to make unilateral mutants, and the wealth of experimental tools and knowledge.

 

The Special Issue features 4 Spotlights, 1 Primer, 1 Review, 20 research articles and, reprinted below, an introductory editorial by Sally and John. Check out the full issue here:

https://dev.biologists.org/content/147/21


 

 

Diseases of development:  leveraging developmental biology to understand human disease

 

Sally L. Dunwoodie and John B. Wallingford

 

Developmental disorders, often called ‘birth defects’, represent the number one cause of infant mortality in the USA and are nearly as lethal in the UK and Australia. The incidence of birth defects is highest in countries with the lowest income per capita. Owing to the highly heterogeneous nature of these conditions, they are commonly thought to be very rare. Collectively, however, they represent the leading biological cause of death for children of all ages. Indeed, in the USA, congenital anomalies are more than twice as lethal as pediatric cancers. These conditions all share an origin in embryonic development, so developmental biologists have a key role to play in addressing this important biomedical problem. In this Special Issue of Development, we highlight that role by presenting a collection of articles in diverse formats that are focused on developmental disorders.

The issue starts with a series of four Spotlight articles (Beames and Lipinski, 2020; Khokha et al., 2020; Leslie, 2020; Link and Bellen, 2020) designed to bridge the still-too-wide gaps that separate developmental biology, human genetics and epidemiology. The Special Issue also includes a short Primer article (Bruneau, 2020) on congenital heart disease, the most common form of congenital anomaly, and a longer Review (Bagnat and Gray, 2020) on the mechanisms controlling spine straightness, highlighting the often overlooked fact that developmental processes continue to play key roles in children and adolescents.

The core of this Special Issue is a series of 20 Research articles and reports that provide a broad view of the state of the field. Using mice, chickens, fish, frogs and human cells, the authors of the studies published here reveal new insights into conditions ranging from structural anomalies, to neurodevelopmental disorders, to pediatric cancers. As genetic causes are only one piece in the developmental disorder puzzle, the role of environmental factors and how these interact with genetic variation is also highlighted. Importantly, these papers also run the gamut from fundamental investigation of developmental mechanisms to direct modeling of genetic lesions known to underlie a human disease, further highlighting the ever-blurring lines between basic and clinical developmental biology.

We hope you enjoy reading this Special Issue and would like to thank everyone – authors and reviewers – who contributed to it. We also hope you will consider sending your next manuscript on this fundamental topic our way!

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