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V International Meeting of the LASDB

Posted by , on 20 November 2010

Being at the end of the planet Earth and organizing an international meeting is not easy. Even harder is to prepare and hold a course intended for an international audience. But the organizing committee of the Fifth International Meeting of the Latin American Society for Developmental Biology, together with the Society for Developmental Biology, managed to make both events possible, with an outstanding response from students and researchers.

First, it was developed the short course entitled “Concepts and Model Organisms in Regenerative Biology”, in Santiago, Chile. The course was composed by theoretical and practical sessions, focused on the regenerative abilities of model organisms, and expert  researchers were invited as speakers and to show to the students about the techniques used in the model organisms of their expertise area. Some invited scientist were Brigitte Galliot, Richard Behringer, Panagiotis Tsonis, Katia del Rio-Tsonis, Alejandro Sánchez-Alvarado, José García-Arrarás and others. The enormous effort and patience of these researchers, together with the incredible amount of work of the local organizing committee (specially Juan Larraín, Miguel Concha and Miguel Allende) made possible the success of this experience.

The course was followed by the meeting in Santa Cruz, a small town in a part of Chile located in the center of the country, known by its vineyards, wine and the nice climate. The reception opening consisted in a walk by the local museum, which has interesting collections, including one of the biggest amber collection with animal and vegetal fossils preserved inside them, and fossils from the ancient fauna in Chile. After the visit to the Museum, a cocktail with chilean wine was waiting for all the students and researchers. The following was simply a success: five days of excellent talks and poster sessions. We enjoyed the presence and talks of Janet Rossant, Allan Spradling, Claudio Stern, Edward de Robertis, Carl Phillip Heisenberg, Roberto Mayor, John Wallingford, Joachim Wittbrodt, Kenneth Poss, Jonathan Slack, the speakers invited to the course and many more. The poster sessions were very exciting; the wine made easy to share and talk with the authors. Personally, the meeting was a complete success, considering that almost eight months ago, the fifth most powerful earthquake in recorded history happened in Chile (actually, Santa Cruz is located in one of the regions of Chile most affected by the earthquake, remembered also by Cristian Undurraga here at The Node, in this post), and also considering the long distance travelled by many of the attendees and the almost two weeks that some of the invited speakers (participating in the short course) stayed in Chile.

I uploaded some pictures of the meeting. It is necessary to mention that all of this success was possible with the outstanding work of many people, including Ida Chow from the SDB.  Please enjoy the pictures, and those of you that attended the meeting and/or the course, please fell free to comment and share your experience.

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A win for Developmental Biology in Japan

Posted by , on 19 November 2010

Science is held pretty highly in Japan. The country has produced 15 Nobel Prize winners in the science disciplines, including two in the field of chemistry this year. But perhaps a little less in the international press’ limelight is Dr. Yoshiki Sasai, winner of the Osaka Science Prize. This honor is like the Japanese version of a science-biased Oscar for local scientists and is awarded each year to a person who has made a major contribution to physical science, engineering, agriculture, biology, medicine, pharmacology or information science by helping to advance scientific understanding and developing new technology. And this year the prestigious honor has been awarded to a developmental biologist.

Yoshiki Sasai
Yoshiki Sasai, winner of the Osaka Science Prize

Sasai is a Group Director in the RIKEN Center for Developmental Biology, a visiting professor at the National Institute of Physiological Sciences and an affiliated professor at Kyoto University Graduate School of Medicine. Adding to this impressive resume, Sasai was also a visiting professor at Lund University Faculty of Medicine and a research fellow at UCLA School of Medicine.

He was awarded with the Osaka Science Prize for his work in the analysis of organizational principles in brain development. His particular interest of research lies in understanding how the complexity of the fully-formed brain arises from a nondescript clump of cells in the embryo by studying very early neurogenesis and the mechanisms of neuronal differentiation.

It is heartening to know that developmental biologists are being recognized worldwide. It can, of course, only be a good thing.

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3rd Latin America Course in ES cells and Development

Posted by , on 19 November 2010

The 3rd Latin America Course on ES cells and Development will be in Cuernavaca, Mexico. It provides extensive hands-on experience and an incredible line-up of speakers. The course can take up to 8 UK PhD students, post-docs, or young investigators, and it is fully funded. Please visit:

http://www.escellslatinamerica.org/

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SDB at the USA Science and Engineering Festival

Posted by , on 18 November 2010

The Society for Developmental Biology participated in the first USA Science and Engineering Festival held October 10-24, 2010 in Washington, DC.  SDB sponsored four separate events throughout the festival in an effort to share the field of developmental biology with the community.  This included a teacher workshop based on the BioEYES K-12 science education program, Nifty Fifty speaker Marnie Halpern who spoke at a Maryland high school, a public lecture featuring Nobel laureates Eric Wieschaus and Martin Chalfie with Alexandra Joyner and Mary Dickinson at the Carnegie Institution, and a 2-day Expo on the National Mall in Washington, DC.

Visitors to the SDB expo booth were able to observe live developing frog and zebrafish embryos, color masks of their favorite model organisms, and participate in the Evolution Thought Trail exercise on the homology of the vertebrate forelimb.  There was an overwhelming excitement from students, parents, teachers, and scientists to participate in future science festivals.

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2010 Gairdner Awards

Posted by , on 17 November 2010

The Gairdner Awards is Canada’s foremost international award, recognizing medical researchers for their work which has contributed significantly to improving quality of life.  There are five awardees each year and 76 of the 298 Gairdner awardees to date have gone on to win the Nobel Prize.

Lectures celebrating scientific excellence in medical research take place across Canada during the third week of October and culminate in Toronto with the Gairdner Awards lectures.  This year in Toronto, the Gairdner lectures kicked off on October 27 with an afternoon of lectures focusing on the eradication of malaria.  On the final day of the lectures, October 29, the Gairdner Symposium was held, highlighting research in epigenetics and genome function.

On October 28, sandwiched between the two outstanding sets of seminars was the main event – the annual Minds that Matter symposium with lectures by the 2010 Gairdner Awards recipients. The 2010 Gairdner International Laureates are:
Dr. William Catterall for the discovery of the voltage-gated sodium channel and calcium channel proteins and the elucidation of their function and regulation
Dr. Pierre Chambon for the elucidation of fundamental mechanisms of transcription in animal cells and the discovery of the nuclear receptor superfamily
Dr. William Kaelin, Dr. Peter Ratcliffe, and Dr. Greg Semenza each for his work in the identification of molecular mechanisms of oxygen sensing in the cell

Also giving lectures were the Wightman and Global Health Laureates.  Dr. Calvin Stiller is the 2010 Canada Gairdner Wightman Laureate, being recognized as a pioneer in organ transplant and diabetes research as well as an innovator in the Canadian biotech industry.  Dr. Nicholas White is the 2010 Canada Global Health Laureate for his research in the effectiveness of artemesinins in the treatment of malaria and elucidating the basis for the use of ACT to prevent resistance.

This year’s lectures covered topics from molecular biology to epidemiology, highlighting the importance of medical research in all fields of biology and health care.  The Gairdners will, no doubt, continue to bring to the forefront significant advances in medical research.

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Rock Stars of Science

Posted by , on 17 November 2010

Glamour, fame, red carpets, flashing lights. It’s not what you usually get as a top scientist, but why not? Why should overnight reality TV stars get more attention than people who spent years researching how the world works? This lack of attention to the important role of scientists was a driving force behind the second annual “Rock Stars of Science” campaign. Men’s glossy magazine GQ is giving 17 researchers the glamour treatment: designer fashion, meeting rock stars, and a multi-page spread in their December 2010 issue.

Posing on the first page of the feature (shown above) are TGF-β scientist Joan Massagué, cancer researcher Craig B. Thompson, and 2009 Lasker winner Charles Sawyers. Dressed to the nines, and giving the camera an ice-cold glare, they’re accompanied by Debbie Harry of Blondie fame. A few pages further is another memorable sight: Nobel Laureates Phil Sharp (sporting a leather jacket) and Liz Blackburn (almost unrecognizable without glasses), together with Anne and Nancy Wilson of Heart:

Other musicians who were happy to pose with scientists in the GQ photo spread are Timbaland, Keri Hilson, Bret Michaels, B.o.B, and Jay Sean, who himself once studied medicine in London: “I was halfway through my degree; it’s when my first record deal presented itself… But I’ll always be a fan of science.”

With surveys showing that many people in the US are unable to name a single living scientists, GQ and the philanthropic Geoffrey Beene foundation hope that the Rock Stars of Science campaign will improve the image of science by profiling its stars. There is no attempt to explain any of the research – just like a photo spread of an actor or musician wouldn’t try to analyze their work. It’s just scientists being shown as, and with, rock stars, to make them look cool and hopefully get people interested in the researchers and the work they do.

The campaign is also supported by a website with profiles of the scientists. Elsewhere online, science writer Chris Mooney, who was involved with the campaign, looks back at the first installment of the photo spread last year. He reveals what happened to the scientists who participated in 2009, and why posing with rock stars may just be the only way for researchers to get through to the public.

The full list of scientists featured in the 2010 Rock Stars of Science campaign:
Stephen B. Baylin, Elizabeth H. Blackburn, Susan J. Blumenthal, Geraldine Dawson, Frank L. Douglas, Bernard A. Harris, Catriona Jamieson, Emil Kakkis, Frank M. Longo, Joan Massagué, Mehmet Oz, Eric M. Reiman, Phillip A. Sharp, Charles L. Sawyers, Craig B. Thompson, Mehmet Toner, Michael W. Weiner

Jealous? Keep up the research, and maybe one day it will be you rubbing shoulders with musicians in a glossy photo shoot.

(Image credit: Kurt Iswarienko)

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Cell death – the video

Posted by , on 12 November 2010

Cold Spring Harbor has just published a new book on cell death by Doug Green, a larger-than-life character who will be familiar to anyone who’s ever been to an apoptosis conference. In this video, Doug talks about the apoptosis machinery and explains why cell death is critical during development.

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Student associations

Posted by , on 11 November 2010

I’m Nish, a 3rd year PhD student in Kate Storey’s lab at the University of Dundee. Over the past year, I’ve been involved in running PiCLS, the PhD association here at the College of Life Sciences in Dundee. Unfortunate acronyms aside, it has the most interesting year of my PhD so far. I thought I’d write a bit about my experiences with PiCLS, hopefully to encourage other students to be part of something similar and maybe even getting other academics thinking about supporting students taking part as well.

To give you a bit of background about PiCLS, it was started in late 2008 by a group of students who had been organising various student events like retreats and decided to form an official organisation for students with support from the college. The aim of this organisation was to help students from different fields network. Dundee may be a small place, but with students working in the lab late hours and sometimes in unsociable labs, it can be difficult to meet other students and socialise with them.

Also, more importantly, it gave students a voice in important decisions made by the College. As PhD students aren’t contracted employees but are often treated as such, it is important that we are heard.

I joined the PiCLS board in its 2nd year. The previous board had established PiCLS in the College of Life Sciences quite well, organising workshops, seminars, a ceilidh (a Scottish dance – some of you may remember the one at this year’s BSDB/BSCB meeting in Warwick) and retreats and we wanted to take this further. As well as academic seminars, we organised career seminars, more social events like pub nights and sports competitions between departments. We even put together a symposium where we invited students from across the country and some big names from different fields to give talks like Matthias Mann, Susan Gasser and Seth Grant.

I learnt a lot in my year on the PiCLS board. I found out a lot about how institutes like the College of Life Sciences are run; especially the logic behind some of the decisions made that at first don’t seem right. I also appreciate how hard it is to organise a symposium/conference. We were very lucky in that we had the expertise of many people who had organised conferences in Dundee at our disposal.

Above all, I had a great lot of fun being part of this society. I got to do some really interesting things that most PhDs haven’t done and I got to know a lot of new people in the process, not just students and academics. It also helped build contacts that may be useful later in my career. These contacts are also useful if you want to consider forging a career outside of science, something that a lot of us students should consider, especially in these testing time. If anyone gets the chance to start up or join a PhD society, I would strongly recommend they take it.

I may have some bias in this statement, being part of PiCLS, but when I think about the things we achieved and the feedback we’ve been given, I hope that every institute thinks about supporting a PhD student society.

In the spirit of social networking, here is a link to our Facebook page with photos and details of events – http://tinyurl.com/38uj5ko.

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In Development this week (Vol. 137, Issue 23)

Posted by , on 9 November 2010

The current issue of Development is now online! Here are the research highlights:

Klf5: a multifaceted regulator of cell fate

Kruppel-like transcription factors (Klfs) induce and maintain pluripotency in embryonic stem cells (ESCs), and Klf4 is one of the factors used to create reprogrammed iPS cells. The role of Klfs in the specification of the three lineages of the pre-implantation embryo – trophectoderm (TE), epiblast (EPI) and primitive endoderm (PE) – however, is not known. On p. 3953, James Wells and colleagues report that Klf5 is a dynamic regulator of all three lineages. Using Klf5 mutant mice, they show that Klf5 deficiency results in developmental arrest at the blastocyst stage, and causes defective TE formation, reduced EPI marker expression and increased PE marker expression in blastocysts. Conversely, overexpression of Klf5 suppresses the PE lineage in blastocysts and upregulates pluripotency-related genes in ESCs. Finally, Klf5-deficient blastocysts in culture fail to form pluripotent colonies and instead have an increased contribution of PE cells compared with control embryos. The authors conclude that Klf5 is a multifaceted regulator of cell fate specification during pre-implantation development.

LGL-1 on PAR with polarity

In the early C. elegans embryo, polarity is established via myosin-dependent contractions that lead to the asymmetric distribution of partitioning-defective (PAR) proteins; PAR-3 and PAR-6, together with the atypical protein kinase C (PKC-3), localize to the anterior cortex, whereas PAR-2 becomes enriched at the posterior cortex. In Drosophila and mammals, PAR-2 is not expressed, but numerous proteins, including Lethal giant larvae (Lgl), act together with the other PAR proteins to establish polarity. Kenneth Kemphues and colleagues (p. 3995) show that the C. elegans homolog of Lgl, LGL-1, functions redundantly with PAR-2 to maintain polarity in the C. elegans embryo. Like PAR-2, LGL-1 localizes to the posterior cortex of the embryo in a PKC-3-dependent manner, and its overexpression is sufficient to rescue loss of PAR-2 function. Importantly, they show that LGL-1 prevents myosin from accumulating in the posterior cortex of the embryo. This provides new insights into the way in which LGL-1 might influence myosin-dependent contractile flows and PAR protein localization, and hence cell polarity.

Nervous asymmetry

Left-right asymmetry is a conserved, but poorly understood, feature of animal nervous systems. Now, Robert Horvitz and colleagues reveal how a neuronal bilateral asymmetry is established in C. elegans (p. 4017). In C. elegans, the left-right asymmetric ABaraap cell lineage generates the single unpaired MI neuron and the e3D epithelial cell on the right and left sides, respectively, of the animal. The researchers show that the proneural bHLH genes ngn-1 and hlh-2, and the Otx homeodomain gene ceh-36 specify the MI neuron and establish this asymmetry – the determination of which occurs in the precursor cells for the left and right branches of the ABaraap lineage. Importantly, this initially cryptic asymmetry triggers activation on the right side only of a transcriptional cascade that then acts through multiple rounds of cell division, with CEH-36 functioning in the MIgrandmother cell, but not in the e3D-grandmother cell, to induce expression of NGH-1/HLH-2 in the MI-mother cell. Given their results, the researchers suggest that an evolutionarily conserved Otx/bHLH pathway establishes nervous system bilateral asymmetry in C. elegans and in other animals.

Shh: homeodomain interpreters at work

Morphogen gradients play an important role in establishing cell diversity during development. But how are small differences in the concentration of extracellular signals translated into a precise, robust transcriptional output in responding cells? On p. 4051, Johan Ericson and colleagues reveal that a homeodomain transcription factor feedback circuit is involved in the interpretation of the Sonic hedgehog (Shh) gradient that patterns the vertebrate ventral neural tube. They report that Nkx2 homeodomain proteins, which are induced by Shh, amplify Shh responses and are required for the induction of floor plate (FP) cells and p3 progenitors, the ventral-most neural tube cells. By contrast, the Pax6 homeodomain protein suppresses ventral fates by antagonising Shh signalling. Finally, the researchers report that a temporal switch in neural potential, rather than exposure of cells to different Shh concentrations, determines the spatial patterning of FP cells and p3 progenitors. They conclude, therefore, that dynamic, non-graded changes in responding cells are essential for the interpretation of graded Shh signalling.

Vascular instruction of liver development

Alagille syndrome (AGS), which is caused by mutations in the Notch ligand jagged 1 (JAG1), is characterized by defective intrahepatic bile duct (IHBD) formation, but the mechanistic origins of this defect have been unclear. Now, on p. 4061, Luisa Iruela-Arispe and colleagues report that the conditional inactivation of Jag1 specifically in the developing portal vein mesenchyme (PVM), and not in the PV endothelium, of mice gives rise to AGS-like liver defects. They demonstrate that loss of Jag1 from the PVM leads to defective IHBD morphogenesis. Cytokeratin-positive bilary epithelial cells (BECs) surround the portal vein of these mice, indicating that their initial specification is Jag1 independent, but these cells fail to develop into mature bile ducts. Using in vitro spheroid co-cultures of isolated BECs and PVM, the authors show that loss of Jag1 from the PVM inhibits BEC aggregation, demonstrating that the PVM is a vital source of Jag1 signalling during BEC morphogenesis. The authors, thus, propose that the developing vasculature provides instructive signals for liver morphogenesis.

War of the whorls

Animal bristles, hairs and other surface appendages are orientated with the body axes and with adjacent structures to form precise macroscopic patterns. Unusually, in frizzled 6-null (Frz6–/–) mice, the hair follicles are orientated randomly in utero but reorientate after birth to create large-scale hair patterns. Jeremy Nathans and coworkers now describe the spatial and temporal dynamics of this hair follicle reorientation process (p. 4091). By analysing follicle orientations in Fz6–/– mice during late gestation and early postnatal life, they discover that an apparently local alignment pattern generates macroscopic patterns that compete with each other. Reorientation of the hair follicles at the junctions between different territories leads to the formation of whorls and crosses, which disappear within a week as the territories expand to generate long-range order. The researchers suggest that mouse hair follicle reorientation, which closely resembles the wing and thoracic hair realignments seen in Drosophila planar cell polarity mutants, could be driven by a follicle repulsion or interfollicle chemoattractant mechanism.

Also…

SRY is the transcription factor product of the sex-determining gene on the mammalian Y chromosome. In this issue, Kashimada and Koopman provide an updated account of how SRY triggers the cascade of molecular events that drive testis formation while inhibiting ovarian development.

See the Primer article on p. 3921

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Transparent mouse embryos and hematopoietic cell clusters

Posted by , on 8 November 2010

I was lucky in graduate school and my postdoctoral research—I was a microscopist working on a transparent organism (C. elegans).  Some microscopists don’t have that luxury, but have developed amazing techniques in order to visualize development in organisms such as mice.  In the November 1 issue of Development, Yokomizo and Dzierzak use a technique that makes an entire mouse embryo transparent and ready for high-resolution confocal microscopy, and they describe a comprehensive analysis of hematopoietic cell clusters.

Hematopoietic cell clusters are bunches of cells found on large blood vessels in mouse embryos and play an important role in the development of the adult blood system.  Based on earlier reports, it was believed that hematopoietic cell clusters contained hematopoietic stem cells (HSCs), which give rise to many blood cell types.  By using a whole-mount transparency method and 3D reconstructions of a mouse embryo, Yokomizo and Dzierzak constructed a temporal and spatial map of all hematopoietic clusters.  The number of clusters peaks at embryonic day 10.5, and the clusters are found in specific subregions on vessels.  In addition, Yokomizo and Dzierzak show that some clusters do contain HSCs and progenitor cells, confirming the pivotal role of cell clusters in the formation of the adult blood system.

Images above show hematopoietic cell clusters on the aorta in mouse embryos.  CD31 (magenta) is expressed by both the endothelial cells on the aorta and clusters cells, while c-Kit (green) is expressed only by cluster cells.  The high magnification view of the cluster on the right shows how closely the clusters are situated next to the endothelium of the aorta.

ResearchBlogging.org

Yokomizo, T., & Dzierzak, E. (2010). Three-dimensional cartography of hematopoietic clusters in the vasculature of whole mouse embryos Development, 137 (21), 3651-3661 DOI: 10.1242/dev.051094


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