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Daniyal Jafree winner of the BSDB advocacy writing competition

Posted by , on 17 April 2018

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In preparation of the 70th anniversary celebrations at the special Spring Meeting in Warwick (15-18 April 2018), the student and postdoc representatives of the BSDB, Alexandra Ashcroft and Michelle Ware, initiated a writing competition for graduate student and postdoc members who were asked to write a max 500 word piece on one of the following topics:

  • The future of Developmental Biology
  • What Developmental Biology has contributed to society
  • The experiment/paper in Developmental Biology that most inspired you

12 excellent submission entered the competition and were judged by Katherine Brown, Aidan Maartens, Ottoline Leyser and Jonathan Slack. The first prize, a free trip to and attendance of the 77th Annual Society of Developmental Biology meeting (Portland, Oregon, USA) was announced at the Spring Meeting’s conference dinner. The BSDB would like to congratulate the winner Daniyal Jafree (@daniyal_jafree). Please, read below and let yourself inspire by the submissions we received.

 

The winner Daniyal Jafree is a medical 1st year PhD student working on the project “Unravelling the origins of the kidney lymphatics” in the group of Dr David Long at UCL. In his piece he writes about a paper by Paul Riley from 2015 which addresses the development and function of the cardiac lymphatic system. Danyial’s piece is a wonderful example of how good DB research has induced a paradigm shift in the cardiac field, but also profoundly changed the career of a young researcher. As Danyial writes at the end: This paper inspired me so much that I contacted Professor Riley to ask whether he had any free positions in this lab. Sadly, he didn’t. But, funnily enough, I am now tackling a PhD in lymphatic biology at my own university, integrated into my medical degree. And guess who I’m collaborating with!

Laura Hankins (runner up; Dunn school, Oxford) relates childhood memories of observing newts at the pond with the transplantation experiments performed in newts by Hilde Mangold and Hans Spemann – the experiments that sparked Laura’s interest in Dev Biol. She reminds us of the fact that our science is more than the focus on disease and sustainability, but concerns true biology and the wonders of nature around us. And she alerts our technology-focussed minds to the fact that there is an art and beauty in experimental design whatever method we use. As Laura comments towards the end: “This experiment is inspiring partly due to the minimalism of its approach; it demonstrates that the most influential experiments are designed without unnecessary embellishment.

Victoria Rook (runner up; PhD at Queen Mary, London) takes a very different, critical view at the future, elegantly framed by comparing current developments in cloning and the use of chimerae and genomic engineering to the dystopian science fiction book “Oryx and Crake” by Margaret Atwood. Weighing optimism against pessimism, she ends with the words: “Soon we will have the resources to cure numerous genetic diseases and, in theory, the ability to improve the lives and health of generations to come. The unease comes with how far we are liable to take this, is a dystopian future where ‘pigoons’ and ‘crakers’ run wild within our reach, or will they remain a thing of fiction?

See also a selection further submissions:

Kane Toh Qin uses Conrad Waddington epigenetic landscape proposed in the 1940s as an example to project from the past to the presence and beyond.

Emilio Mendez describes how learning about limb bud transplantation experiments performed by Ross G. Harrison in the 1920 inspired his passion for Developmental Biology.

Amanda Berg looks at the future of humans in space and the colonisation of other planets, and the need to investigate the possibility of reproduction and embryonic development away from earth.

Caitlin McQueen describes how she was influenced by the publications on nuclear transfer experiments carried out by John Gurdon in Xenopus laevis intestinal cells.

Massimo Ganassi talks about the difficulty and importance of communicating our science.

Anna Klucnika alerts to the need of communicating DB and provides some thoughts how to do it.

Sandra G González Malagon asks the fundamental question of what DB has contributed to society.

 

Essay question: The experiment/paper in Developmental Biology that most inspired you (winner)

Daniyal Jafree

As a medical student into Developmental Biology, it bugged me when my friends asked: “Why Developmental Biology? That’s boring, and not relevant to medicine at all?” For me, there is no paper that disproves this greater than that published by Paul Riley and colleagues from the University of Oxford, in Nature in June 20151. This paper, representing eight years of work, examined the development and function of the cardiac lymphatics. Together with two other papers published at around the same period, Riley and his group overturned a 100-year old dogma in lymphatic biology within the space of about 12 months, and laid the foundation for a new therapeutic strategy for heart disease.

Lymphatic biology is a very hot topic. These vessels, at the interface between vascular and immune systems, have been implicated in cancer, obesity, hypertension, inflammatory diseases and beyond. Lymphatics supposedly arise from a single source. A subset of cells in the wall of the cardinal vein express markers of lymphatic fate specification early in development. These cells bud off, form lymphatic sacs, and reach out to produce the entire lymphatic system. At least that is what we thought.

Riley and his group performed Cre-based lineage tracing to capture the venous-derived lymphatics in the heart. Remarkably, not all of the cardiac lymphatics were labelled. So where on earth were these non-venous derived cells coming from? The group went ‘all out’, using a battery of Cre lines in a painstaking effort to capture these mysterious cells. The answer was shocking: they were not coming from the heart, nor the embryo at all! They were coming from outside the embryo, from haemogenic endothelium in the primitive yolk sac. That yellowish bag-looking thing that I always dissected and disregarded when doing my own experiments.

But Riley and his group didn’t stop there. Given the importance of the lymphatics in fluid homeostasis and inflammation, they were reasoned to have a role in cardiovascular disease, one of the biggest killers in the modern world. The team took lymphatic reporter mice and induced cardiac injury, by tying off a key artery supplying the myocardium. Lymphatic vessels expanded, and this growth occurs via the same programmes that drive lymphatic expansion in development. Using magnetic resonance imaging (which, as a medical student, I had no idea was possible in mice), they showed that treatment with a lymphangiogenic growth factor improved heart function after cardiac injury.

This paper isn’t my favourite solely because it challenged an age-old hypothesis, and did so robustly by using multiple parallel experimental strategies. It’s also the link it makes to a common disease process, and the manipulation the same programmes that drive lymphatic development to halt this process. This paper inspired me so much that I contacted Professor Riley to ask whether he had any free positions in this lab. Sadly, he didn’t. But, funnily enough, I am now tackling a PhD in lymphatic biology at my own university, integrated into my medical degree. And guess who I’m collaborating with!

References

  • Klotz et al. (2015). Cardiac lymphatics are heterogeneous in origin and respond to injury. Nature, 522: 62-67.

Daniyal’s acceptance speech:

“I’m grateful to be receiving this prize from the BSDB, and I’m actually baffled I won, considering I’ve never had any formal teaching in developmental biology. I’m a medical student with no clear indication as to what clinical specialty I want to pursue, but with a strong interest in developmental biology. Unfortunately, I think I’m in the minority. I have lost count of the number of times that non-basic science-trained clinicians ask me about my interests, and when I respond, their faces screw up as if they have taken a large bite from a lemon.

Through my clinical career so far, I’ve always found myself coming back to developmental biology, with the support of the BSDB. First, as part of an integrated BSc degree during medical school, after which the BSDB supported my attendance at a conference in Chicago. Later in 2016, as part of a BSDB-funded summer studentship. And now, being supported by my medical school to do a PhD in lymphatic development, alongside my medical studies.

I think there is so much the clinical world has to learn from developmental biology, about birth defects, cancer, regenerative medicine and beyond. The paper I wrote about in my essay is just one incredible example of developmental biology’s potential. This paper, published in Nature by Paul Riley’s group in Oxford, showed that cardiac lymphatics develop in a completely unexpected way and, with two other papers published the same year, overturned a 100-year old dogma in lymphatic development. Riley and colleagues went on to show that tinkering with the same pathways that drive lymph vessel growth in development, can be used to manipulate lymph vessel growth to benefit cardiovascular disease. This is why it is undoubtedly my favourite scientific paper, since its publication in 2015.

I really hope, one day, I can forge a career that brings the clinical world and developmental biology closer together. So thanks to the BSDB and the massive support it’s provided me over the years, as you have given me hope that such a career can, and will, happen. And, of course, thank you again for this amazing prize.”

Painting the embryo by numbers: how nature provided the tools for an inspirational experiment (runner up)

Laura Hankins

Visit a local pond and lie flat on your stomach, allowing the soft mud to seep into your clothes. Be sure to bring a jam jar; it will sparkle in the lazy spring sunlight as you shift it closer to the water’s edge. Wait patiently, observing any disturbances to the dappled surface. There! The flat tail of a newt in the breeding season.

Pleurodelinae is an unassuming collection of newt species within the Salamander family. As a child, sitting by the pond in our front garden, I was often charmed by the sedate movements of common newts contrasting with the constant hum of traffic whipping past. I think I probably wanted to hunt for new species in undiscovered rainforests, as this seemed a reasonable career move at the time. Little did I know that the humble newt would reappear in a university lecture, starring in an experiment that inspired me to pursue Cell and Developmental Biology.

It is 1924. In Hans Spemann’s laboratory, our friends the newts have been the subject of a series of experiments performed by Hilde Mangold as part of her doctoral studies. Spemann was no stranger to amphibians; his work on eye development had made good use of frogs. Now he had turned his attention to how broader embryonic regions are defined.

During gastrulation, the embryo folds in on itself to produce three distinct layers that will ultimately have different fates. This produces the blastopore, an opening that acts like an insatiable mouth as the embryo consumes itself. Spemann, amongst others, had observed that transplanting tissue from the blastopore lip into another embryo resulted in the formation of a second neural tube and its surrounding structures. Many assumed that these features arose exclusively from the donor cells, but Spemann and others hypothesised that these cells could be acting as an ‘organiser’, signaling to influence their neighbours’ fates. But how to test this suggestion?

The breakthrough came with an idea that was beautiful in its simplicity. Mangold repeated the transplantation experiments but moved the tissue between different newt species. These newts had distinct pigmentations, so it would be possible to discern host from donor tissue after leaving the embryo to develop following surgery. In 1924, embryos left for sufficient time developed a chimeric conjoined twin with its own neural tube, notochord and somites. After sectioning, Mangold observed that these structures contained both pigmented and unpigmented cells. Remarkably, it seemed Spemann was right: the transplanted tissue had somehow altered the fate of the surrounding host cells, coopting them into forming an artificial twin.

This experiment is inspiring partly due to the minimalism of its approach; it demonstrates that the most influential experiments are designed without unnecessary embellishment. Yet its surgical element made it incredibly technically complicated. Thanks to their logical design, and the natural features of newts, Spemann and Mangold changed our perception of cell fate determination. Years later, researchers are still being inspired to use knowledge of the natural world to address questions at the cellular level.

Is the future of developmental biology written in science fiction? (runner up)

Victoria Rook

As a developmental biologist and devoted reader of dystopian science fiction, I frequently wonder how often these two things overlap, when will fiction become fact and fact mirror fiction? A couple of years ago I came across a fantastic book, Margaret Atwood’s Oryx and Crake 1. This book is set in a desolate, dystopian future that arose as a consequence of biotechnology corporations taking genetic engineering to extremes. The accountable corporations created many chimeric animals, one magnificently named example are the ‘pigoons’;

The goal of the pigoon project was to grow an assortment of fool-proof human

tissue organs in a transgenic knockout pig host….1

In January 2017, Juan Carlos Izpisua Belmonte at the SALK institute, California, published a paper in Cell titled; Interspecies chimerism with human pluripotent stem cells2. In this article, Belmonte introduced human stem cells into pre-implantation pig embryos. Chimeric human-pig embryos were then implanted into female pig recipients and developed for four weeks before analysis. The ultimate objective of this research is to grow replacement organs in pigs for human transplant. Unfortunately, Belmonte did not credit Atwood for her conceptual influence and, more disappointingly, there is no mention of ‘pigoons’ throughout the paper.

Atwood also describes a superior human species, the ‘crakers’, which were developed as prototypes of what could be available to those willing to pay top dollar for ‘genetically perfect’ children. A decade later, Feng Zhang’s group in Harvard were the first to report CRISPR-Cas9 mediated genome editing3. Shortly after, in 2015, Junjiu Huang’s group in China used this CRISPR-Cas9 technology to carry out targeted genome editing in human embryos4 with the intent to treat β-thalassemia. More recently, Kathy Niakan, a group leader at the Francis Crick Institute in London, has obtained a HFEA license to use CRISPR-Cas9 technology to manipulate the human embryo genome in order to study early development. Understandably none of these embryos have been, or will be implanted into human recipients, but how far away are we from being able to create Atwood’s ‘crakers’?

Oryx and Crake is one prophetic example where fiction has seemingly ‘foretold the future’, posing questions about how much can we learn about the future of developmental biology from science fiction? Aristotle showed us model organisms could be used to study development, however, given innovations in CRISPR-Cas9 technology and ongoing discoveries of evolutionary developmental differences between species, is it likely that model organisms will become a thing of the past and CRISPR-engineered human embryos pave the way of the future? Whilst this may sound like a pessimistic prognosis for the future of developmental biologists working with model organisms, I am actually very excited for what the future holds. Soon we will have the resources to cure numerous genetic diseases and, in theory, the ability to improve the lives and health of generations to come. The unease comes with how far are we liable to take this, is a dystopian future where ‘pigoons’ and ‘crakers’ run wild within our reach, or will they remain a thing of fiction?

References

  1. Atwood, M. Oryx and Crake. (Bloomsbury, 2003).
  2. Wu, J. et al. Interspecies Chimerism with Mammalian Pluripotent Stem Cells. Cell 168, 473–486.e15 (2017).
  3. Cong, L. et al. Multiplex genome engineering using CRISPR/Cas systems. Science (80-. ). 339, 819–824 (2013).
  4. Liang, P. et al. CRISPR/Cas9-mediated gene editing in human tripronuclear zygotes. Protein Cell 6, 363–372 (2015).

Does developmental biology have a future?

Anna Klucnika

Last year I marched the streets of London with thousands of other science enthusiasts, as many more thousands did so in other cities across the globe. The reason? Politics has gotten in the way of science and the public is, apparently, tired of experts.

With funding plummeting in the UK and already slashed in the US, the future of research is unclear. There is increasing pressure from the public, funding bodies and governments for biological research to focus on questions that generate click-bait headlines claiming a disease cause or cure. Research with direct applications for human health and disease is unequivocally important. However, recent funding trends reveal that basic biological research is being institutionally neglected. This will leave huge collections of questions unanswered. Many of these questions would have lead onto findings with broad implications that could have revolutionised human health.

Developmental biology is one such science that is often perceived to have little implication on the lives of the majority of the population. Developmental biology is the study of how cells make tissues, organs and organisms. This humble field has led to many discoveries with worldwide impact, for instance cloning, understanding birth defects and optimising IVF. Nevertheless, developmental biology is persistently undervalued. Research using animals that are more commonly known as pests was always going to be a hard sell.

In walks Developmental Biology’s sexier cousin: stem cell and organoid biology. Really, these two scientific fields are more likely sisters. Both ask the same question (how do cells make organs), but stem cell and organoid biology inherently has more of a focus on research with direct therapeutic applications. Organoids can be used to aid our understanding of organ growth and tumorigenesis, to screen for drugs and may potentially enable us to grow organs for transplantation and so is attractive to funders and, crucially, the public.

To grab the public’s attention, Developmental Biologists need to learn from the organoid field and showcase the research that has fast-track therapeutic potential. Old school developmental biologists whose careers blossomed when curiosity-driven science was enough will be severely offended by this statement. But scientific culture has dramatically changed. We are in an era of information overloaded in which headlines are updated every minute, not day. Sexy science thrives in this environment, whilst the less-glamorous fields are quickly forgotten.

To stay in the game, Developmental Biology needs a makeover. We need a new vocabulary that everyone can understand. We need to be proud of the research that will have an impact on the public’s life. Most importantly, we need to be united in our goal. Developmental biology is an extremely broad term. We must not be eager to divide ourselves based on our research, our question or our model. Ultimately we are all trying to work out the mystery of how a single cell can make something as amazing as a plant or animal. Once we remember that, we can share the sex appeal and developmental biology can thrive. Maybe we can convince people that experts aren’t so bad after all.

The future of Developmental Biology – addressing biological complexity

Kane Toh Qin

Conrad Waddington proposed the metaphorical epigenetic landscape in the 1940s as a model for the unfolding of discrete cell fates. In the modern post-genomic era, the metaphor has experienced a resurgence in popularity. Tailored with the theory of dynamical systems, developmental biologists have used the conceptual apparatus to make quantitative predictions of differentiation dynamics. The appeal of the epigenetic landscape illustrates the importance of conceptual frameworks in developmental biology to highlight general principles of development; a notion that is especially pertinent in light of the overwhelming complexity of the ‘omics’ datasets today.

As sequencing technologies, time-lapse imaging techniques and genetic engineering methods continue to improve, we will have the technical tools to probe the epigenetic landscape. I believe that Developmental Biology in the future will provide increasingly coherent and precise explanatory accounts of phenomenological discontinuities that arise in different spatial and temporal scales of organismal development. For instance, how do fluctuations in the number of mRNA and proteins in a single cell allow for the coordination of cellular decisions over cell populations? How is the genotype-to-phenotype map implemented in an organism, and how do these properties influence its long-term evolutionary dynamics and vice versa?

To pave the way for these explanations, developmental biologists should further appreciate that knowledge of the component parts of biological systems alone will not beget knowledge of principles of development. As the complex systems biologist Kunihiko Kaneko argues, using an analogy from physics, without the existence of (macroscopic) thermodynamics, statistical mechanics, which connects microscopic behaviour to macroscopic thermodynamic quantities, would not have existed as a branch in physics. This will encourage a shift in perspective away from a reductionistic snapshot of biological components to a processual, dynamic framework of developmental mechanisms as coupled, interacting processes in complex systems. As the physicist Robert Laughlin puts it affectionately, life is the ‘granddaddy of emergent phenomena’ and emergent phenomena, as we know it, arise from a collection of interactions.

The complexity of living systems is such that further progress in Developmental Biology will inevitably require advances that derive from interdisciplinary dialogues between natural scientists. As such, developmental biologists will become more familiar with the tools and concepts involved in constructing quantitative explanations to complement their study of developmental mechanisms. For example, information theoretic measures like entropy are used today by some biologists to understand the process of stem cell differentiation at a single cell level.

With the accumulation of so much biological data, one can sympathize with the notion that the complexity of biological development eludes further human understanding—a position that spurred the embryologist, Hans Driesch to embrace vitalism. But we should be optimistic about the future: organismal development can be understood mechanistically, by first extracting its most important features and then analysing the patterns that emerge with the interdisciplinary tools and conceptual frameworks at our disposal. The principal task of developmental biologists then is to continue directing attention to the Biology and working out the crucial biological features for investigation.

The experiment/paper in Developmental Biology that most inspired you

Emilio Mendez

My history is funny I think. When I was a kid, I remember asking my father about why elephants were so big? Why mice so small? Why our Pomeranian dog was small? Meanwhile, our neighbour had a big German Shepherd. My father was intrigued by my questions and decided to bring a complete juvenile encyclopaedia and tried to find the answers I was looking for inside it.

Those questions usually disappear quickly with traditional education, puberty, football and love. My father past away when I was sixteen years old, however, he left me many teachings about life, he always told me two things, first, try to understand what you cannot explain, usually its worth. Second, what a man can build, another one also can.

When I had to choose my path after high school, I decided to study Biochemistry, because I like it a lot biology and chemistry. However I was not familiarised with the work of a scientist, for me it was more like “I like that, and I do not like mathematics”, however, I have never been so wrong. Soon I got in touch with that other science, and my mind was amazed at the fact that they are interconnected in such a beautiful way that it is childish to think they walk separated ways in build our world.

When I was finishing my career, I decided to take a course called “Genetic Control of Development”, totally unaware of what it was about, but what I found was love at first sight. Suddenly all my questions, my early questions came to my mind, especially when I saw the paper of Ross G. Harrison 1924, he transplanted limb buds of two different species of salamanders, with the idea of study which factors or signals affect the proportions of tissues. As the title of the paper, unexpectedly, both limb buds developed to its average size (donor size). That shocking difference was all I was looking for; suddenly I realise my question about the size of an individual it has no answer yet, however many factors have been described since Harrison (and Twitty 1931).

Those papers are essential for me because they summarise the beauty of Developmental Biology, simple question with simple experiments and a fantastic result, which open new roads to explore how the life has developed in our world. Later on, during my PhD studies, I meet the magnificent book “On Growth and Form”, it is the perfect crystal of all the sciences working together to build a life. I believe that if every boy and girl could see this book, many of them will never lose their curiosity about our world.

These are some of the elements that guide me to developmental biology, they drive me back to my childhood, like an old forgotten melody that came up out of nowhere. Just to realise how brave my father was.

I think he was telling me to study what a man cannot build yet, the life.

The future of Developmental Biology

Amanda BergAs the human species expands its curiosity and desire to explore the unknown, the concept of inhabiting other planets does not seem too distant. As humans, we are naturally curious and have always had the desire to explore our surroundings. Colonisation of Mars, or even more distant planets, will rely heavily on the successful reproduction and growth of the human species. Currently, scientists are investigating the physiological role that gravity and space travel can play on our bodies, but for successful fertilisation and growth of foetuses in space, we will also need to start thinking about the effect of space flight and gravity on a developing embryo.

Xenopus laevis embryos have previously been sent to space and as a result they grew into abnormally developed larvae. They had longer tails, combined with smaller heads and bodies than the Earth-grounded comparisons. Their notochords were deformed, with resulting abnormal curvature of the spine, causing them to swim in backwards somersaults (Snetkova et al., 1995). It is possible that these defects are due to abnormal dorsal-ventral axis specification which is determined through cortical rotation, and is thought to rely on gravity.
Another experiment was also proposed to attempt to grow chicken embryos in space, but due to the complicated experimental design and short time-scale given to the project, it never went ahead (NASA, 1977).

More recently, 2-cell mouse embryos were sent into space, which went on to develop into healthy blastocysts (Chinese Academy of Sciences, 2016). This exciting result means human embryos may also be able to develop in space. It would be exciting to investigate whether these blastocysts could be implanted into female mice, and whether they can form healthy offspring.

We will also need to consider whether normal reproduction can occur in space. Fertilisation had occurred on earth for all of these experiments, and the animals were also not grown to full term. We will also need to consider the different gravitational fields found on other planets; how would an embryo look if it was conceived and fully developed on the International Space Station, where gravity is almost minimal? What about on Mars, where the gravity is weaker than on Earth?

It is inevitable that humans will attempt to colonise other planets, and to do so we must investigate the possibility of reproduction and development of embryos in space. We can only hope that healthy foetuses can develop, and that the growth of the human species is not inhibited by its own developmental biology.

References:

Chinese Academy of Sciences (2016) “Chinese scientists develop mammal embryos in space for first time”, accessed 01.03.2018 [LINK]

NASA (1977) “SP-401 Skylab, Classroom in Space. Chapter 5: Embryo Development in Space”, accessed 01.02.2018 [LINK]

Snetkova, E. et al. (1995) ‘Effects of space flight on Xenopus laevis larval development’, Journal of Experimental Zoology Part A, 273(1), 21-32

What has developmental biology contributed to society?

Sandra G Gonzalez Malagon

“How are we formed?” My 6-year old nephew asked me with innocent wisdom. It’s been 17 years since and I still do not have a simple answer for him. The observation of natural life and the attempts to explain the world around us has fascinated human beings throughout our existence. Even Ancient Greeks considered fundamental questions about embryogenesis and inheritance. Developmental Biology (DB) covers all of these related questions: How do different organisms develop? What controls the patterning of different species? What are the subtle differences that lead to individual characteristics? What happens if the synchrony is disturbed? How does the environment influence an organism’s development?

Our Society today has a better understanding on how a person’s life develops from the womb. New parents can not only envision the stages of development of their unborn baby, but they also are aware of the importance of reproductive age, a healthy lifestyle and the risks of alcohol, cigarettes, medications and environment on their child’s development. They can be offered in utero diagnosis of chromosomal abnormalities or assessment of embryos prior to implantation can be a choice for parents who present high risks of passing a disease to their child. This information has made a tremendous impact not just for families, but also potentially eradicating disease and addressing global health problems.

DB studies identified the factors required for a cell to remain pluripotent -undifferentiated state- and the factors to induce these cells into specific cell types, (muscle, neurons, etc.) These findings provided the basis for the complicated protocols used to culture them in vitro. The surprising ability of these pluripotent cells to self-organise ex vivo and differentiate into a functional “organoid” (a small replication of a functional organ) has given the field of translational and basic research an outstanding advantage. These organoids can be cultured from human cells and are a great tool to model human diseases and to find personalised treatments. Stem Cell Research and Regenerative Medicine are the two emerging fields in Biology that have reshaped the way we think of development and disease. Although not yet mature, potential treatments for diabetes, neuronal regeneration, or gut repair -just to mention a few- are in the list of possible successful treatments, that up to date, have not been found.

From understanding how we develop to finding disease treatments, how other organisms develop to how the environment influences these processes and evolution, DB will continue to be the “stem cell of biology disciplines”, as Professor Scott Gilbert described in his recent essay on this topic. DB has the potential to give rise to many disciplines in biology, as it has been doing for a long time. As for my nephew, I hope that the innate developmental biologist that lives in every kid continues to be curious and astonished about the natural world that surrounds us. Only this will help preserve our planet and the species that live in it.

The Duty of Developmental Biologists

Massimo Ganassi

“So, which illness are you trying to make the cure for?” -he asked me mumbling- “Well, we are now studying how muscle is formed during embryonic development and this may be helpful to understand what goes awry in muscle diseases and therefore suggest a cure”. Even more confused he looked at me and said: “ mmm… but I guess it would be better, and quicker, to study how to cure the disease directly rather than how something is working when is working right, isn’t it?”. I admit, this always sounds a very honest, genuine and reasonable suggestion from a “non-science” person. Indeed, at this point I usually avoid adding confusion saying that I do research on embryonic fish muscle development.Similar conversations happen frequently to me, whenever I try to explain what my job is and how scientists spend their hours working.

For everyone, from kids to older people, it is easy to appreciate the efforts of a baker, a plumber or a bus driver simply because they produce usage for everyone. In contrast, the importance of scientific research does not reach the many and Developmental Biology is still thought to be a mere scientific and academic discipline whose results are far away from everyday life needs. Sadly, this just reflects how far the “normal” and “scientific” worlds are still apart, and it is partly our fault.

From the pioneer work of D’Arcy Thompson1, through the golden decades of developmental biology, to the most recent “omics” era an incredible amount of knowledge has been reached and fruitfully contributed to our wellness. As insiders we all know that developmental biology deeply enhanced the understanding of a multiplicity of biological processes from fertilisation of egg cells to the healing of wounds, nevertheless contributing to the treatment of human conditions such as infertility, cancer or genetic diseases. Moreover, several excellent works have highlighted the central role of Developmental Biology in an attempt to attract and engage the lay public into scientific research discoveries2,3,4,5.

As a matter of fact, nowadays, communicating science is even more important than making scientific discoveries. This is also reflected by the importance given to public outreach events and their primary role even in grant proposal applications. We must convince people that basic research is worth their consideration and money donation. Recently, to help scientists in public outreach, many platforms have become available to spread science, from the more specialist web-forum The Node to the more common social media6.

We do have the responsibility and duty to translate the importance of our research by strengthening our communicative potential. This means explaining to people why animal models such as mouse, zebrafish, frog and fruitfly are so important in our research and how developmental biology has contributed to everyday life, from the most recent medicine advance to the latest agriculture technique. This has to be the main goal of every scientist. We do make daily efforts to achieve our research aims and we must make our goals and results understandable by everyone.

References

[1] Thompson D’AW. On Growth and Form. (1917) Cambridge University Press.

[2] Prokop A. What is developmental biology and why is it important. (2018) https://www.openaccessgovernment.org/developmental-biology-important/41386/

[3] Edge L. What Is the Future of Developmental Biology? (2017) Cell 170:6 -7, doi: 10.1016/j.cell.2017.06.019

[4] St Johnston D. The Renaissance of Developmental Biology. (2015) PLoS Biol 13(5): e1002149. doi:10.1371/journal.pbio.1002149

[5] Pourquié O. Development: looking to the future. (2012) Development 139: 1893-1894; doi: 10.1242/dev.082685

[6] Vicente C., Maartens A., Brown K. The Node and beyond-using social media in cell and developmental biology. (2017) Semin Cell Dev Biol. 70:90-97. doi: 10.1016/j.semcdb.2017.05.009.

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Research Position, Mokalled Lab

Posted by , on 17 April 2018

Closing Date: 15 March 2021

The Mokalled lab at Washington University School of Medicine is seeking outstanding applicants for multiple research positions (http://www.mokalledlab.com/).  Our lab uses zebrafish and mouse model systems to study neural regeneration after spinal cord injury or disease.  Candidates with enthusiasm for neuroscience, regenerative biology, and zebrafish research are encouraged to forward a cover letter, CV, and list of 3 or more references to mmokalled@wustl.edu.

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Richard Gardner is the 2018 BSDB Waddington Medal winner

Posted by , on 16 April 2018

BSDBlogoThe Waddington Medal is the only national Developmental Biology award in the UK. It honours outstanding research performance as well as services to the subject community. The medal is awarded annually at the BSDB Spring Meeting, where the recipient presents the Waddington Medal Lecture. Here we introduce the 2018 winner Richard Gardner who won the 2018 Waddington medal for his outstanding work in the field of early embryogenesis and stem cells, as well as continued contributions to the development of our field and the shaping of science policy in the UK.

 

Born in 1943,  Richard Lavenham Gardner, Kt, MA, PhD, ScD, FIAT(Hon), FRSB, FRS studied at St. Catharine’s College and the University of Cambridge from 1963-1966, graduating with a First Class Honours B.A. in Physiology. For his PhD, he remained in Cambridge in the Physiological Laboratory of Robert Edwards (Nobel prize winner, pioneer in reproductive medicine and in vitro fertilisation / IVF), where he worked alongside Martin Johnson and was awarded his title in 1971 for his thesis entitled “Investigation of the mammalian blastocyst by microsurgery”. He stayed on in Edward’s lab as a research assistant for another three years, from where he moved to a University Lecturer position at the Department of Zoology, University of Oxford (1973-77). During that time (and beyond) he was a Visiting World Health Organization Fellow in Warsaw and Zagreb and Student of Christ Church (Oxford). In 1978 he became Henry Dale Research Professor of the Royal Society at the University of Oxford until 2003. Thereafter he held positions as Edward Penley Abraham Research Professor of the Royal Society (2003-8), honorary Visiting Professor at the University of York (2007-16), and is now an Associate at the University of Oxford and Emeritus Student of Christ Church, Oxford.

Scientifically, Richard is well known as a pioneer in the study of early mammalian development, having made many hugely important discoveries relating to the fate of cells in early mammalian development and the properties of stem cells derived from early embryos (see selected papers below). These were made possible by his strong knack for identifying important questions and addressing them in innovative and at the same time definitive ways, always with extremely elegant experimental design.

His numerous important scientific contributions include: being the first to use clonal analysis to fate map the early mouse embryo, along with experimental manipulations to assess the potency of individual cells, establishing how the germ line is segregated in the early embryo, and pioneering blastocyst injection for studying stem cell potency. His work laid essential foundations for pre-implantation genetic diagnosis, now widely used in human fertility clinics, and for the embryonic stem cell (ESC) field. He was one of the pioneers developing and using micromanipulation techniques in mammalian embryos, the kind of technique now commonly used, for example for human IVF and cloning (such as the cloning of the sheep Dolly). He is also known for his work on embryonic stem cell derivation (together with Frances Brook), demonstrating that ESCs originate from the epiblast and that the most efficient method to derive them in mouse is to use delayed-implanting blastocysts (diapause blastocyst).

The four surviving ICRF Developmental Biology Unit group leaders – Philip Ingham, David Ish Horowicz, Richard Gardner and Jonathan Slack at the BSDB Spring Meeting 2018.

Awards and Honours

  • Waddington Medal of the British Society of Developmental Biology (2018)
  • Patrick Steptoe Memorial Lecturer and medallist (2015)
  • Honorary Doctorate of Science from the University of Cambridge (2012)
  • Annual Lecturer Cumberland Lodge (2010)
  • Honorary Fellow, St. Catharine’s College, University of Cambridge, UK (2007)
  • Knight Batchelor in the Queens’ Birthday Honours (2005)
  • Albert Brachet Prize of the Belgian Royal Academy (2004)
  • Karl Beyer Visiting Professor, University of Wisconsin, Madison, WI, USA (2001)
  • Royal (Queen’s) Medal of the Royal Society (2001)
  • March of Dimes International Prize in Developmental Biology (1999)
  • Elected Fellow of the Royal Society of London (1979)
  • Scientific Medal of the Zoological Society of London (1977)
  • Belfield-Clarke Prize for the Biological Sciences (1966)
  • Elected Scholar of St. Catharine’s College (1966)
  • Kitchener Scholar (1963-66)
  • Prizes for Physics and Biology (1963)
  • First Prize in Natural History Essay (1959)
  • First Prize in Natural History Essay (1958)

Throughout his education and scientific career, Richard has excelled in outstanding performance, as is clearly demonstrated by the long list of awards and honours (see Box); and he has always been a committed member of the Developmental Biology community who contributed notably also in policy making relating to ethical issues connected with access and use of human embryos in research, ethical aspects of cloning, and ethical use of animals in research. His dedication is clearly reflected in the many important positions he served in throughout his career:

  • Editor of the journal Development (formerly J. Embryol. Exp. Morph, 1977-91) and editorial board member of the journals Gamete Research, Placenta and Cancer Surveys
  • President of the Institute of Animal Technology (1986-2006)
  • Independent Member of the Advisory Board for the Research Council (1989-93)
  • together with Walter Bodmer (head of ICRF) he co-founded the Cancer Research UK Developmental Biology Unit at Oxford’s Zoology Department (attracting the likes of Andy Copp, David Ish Horowitz, Jonathan Slack, Julian Lewis and Phil Ingham), of which he was Honorary Director (1986-96)
  • Vice President of the Zoological Society of London (1991-92)
  • Vice-President and Member of the Laboratory Animal Science Association Council (1996-99)
  • Trustee and then chair of the Edward Penley Abraham Research Fund (1999, 2003)
  • President of the Institute of Biology (now Royal Society of Biology; 2007- 08)
  • Chair of the Royal Society Working Group on Stem Cells and Therapeutic Cloning (1998-08)
  • Chair of the Animals in Science Education Trust (AS-ET; current)
  • Author of numerous reports to commissions, committees and inquiries of significant political impact
  • Organiser of various scientific conferences, meetings or discussion forums.

Richard’s enormous influence is also reflected in the fact that he was mentor to many illustrious embryologists, including Janet Rossant (PhD, 1976), Andrew Copp (DPhil, 1978), John Heath (DPhil, 1979), Paul Tesar (DPhil, 2007), Virginia E. Papaioannou (postdoc, 1973-81), Jenny Nichols (PhD, 1990), Karen Downs (1989-93) and the recipient of the 1999 Waddington medal Rosa Beddington (D. Phil., 1983) – to name but a few.

But it should also be pointed out that aside all this prolific work in science as well as science administration and policy, Richard still has been finding time for an impressive number of hobbies, of which he lists ornithology, music, sailing (unfortunately no longer!), gardening, clay shooting and painting landscapes in watercolour. To illustrate Richard’s continued dedication, he donated his latest three watercolour paintings to the AS-ET and they were sold for a gratifying £1150 to provide bursaries and other awards to enable laboratory animal technicians to advance their education and training.

The BSDB would like to congratulate Richard Gardner for the Waddington award, of which he certainly is a most worthy recipient.

An eclectic selection of some of Richard Gardner’s major landmarks publications:

    1. Gardner, RL (1968) Mouse chimeras obtained by the injection of cells into the blastocyst. Nature 220: 596-7 — This paper describes the method of blastocyst injection in which small groups of donor cells derived from a genetically-distinct blastocyst are injected into the blastocoel cavity of a host blastocyst; chimeric blastocysts are then transferred to a foster mother and gestated to term. The paper also demonstrates that blastocyst cells contribute to the adult animal and germ line. The technique of blastocyst injection is still used routinely both to generate transgenic mouse models using genetically-modified embryonic stem cells.
    2. Gardner RL, Lyon MF (1971) X chromosome inactivation studied by injection of a single cell into the mouse blastocyst. Nature 231: 385-6 — Using blastocyst injection of single inner cell mass (ICM) cells combined with genetic markers, this paper shows that the adult animal is derived from the ICM. It is also a landmark paper in the history of the discovery of X-inactivation.
    3. Gardner RL, Papaioannou VE, Barton SC. (1973) Origin of the ectoplacental cone and secondary giant cells in mouse blastocysts reconstituted from isolated trophoblast and inner cell mass. J Embryol Exp Morphol. 30: 561-72In contrast to “blastocyst injection” (above) to determine the fate/potency of ICM cells via injection into the blastocoel cavity, the technique of “blastocyst reconstitution” was created to discover the fate and potency of the trophectoderm. The paper demonstrates that the trophectoderm gives rise to major components of the chorionic component of the placenta but not to the embryo proper. This allowed him to create the first fate maps of the mouse conceptus.
    4. Gardner, RL (1982) Investigation of cell lineage and differentiation in the extraembryonic endoderm of the mouse embryo. J Embryol Exp Morphol. 68: 175-98At implantation, the ICM segregates into epiblast and primitive endoderm (PE). Using blastocyst injection, this paper shows that PE generates visceral and parietal endoderm, which are supporting tissues for the ICM-derived epiblast. This study expanded the mouse fate map to show that ICM gives rise to epiblast and primitive endoderm.
    5. Gardner RL, Meredith MR, Altman DG. (1992) Is the anterior-posterior axis of the fetus specified before implantation in the mouse? J Exp Zool. 264: 437-43 — This paper provides the first evidence that head-tail orientation of the early embryo is established prior to the overt appearance of the primitive streak.
Acknowledgements: Andreas Prokop would like to thank Berenika Plusa for helpful information, Richard Gardner for sending information, images and approving the draft of this article, and Claudio Stern and Jonathan Slack for helpful information and thoughts taken from their nomination text.
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A BSDB history rap!!!!

Posted by , on 13 April 2018

 

This year, is the BSDB’s 70th anniversary! Expect many extras on our Spring Meeting (15-18 April 2018 in Warwick)! For example, the history rap, a contemporary oral rendering of BSDB history, featuring Jerry aka Gerald H Thomsen PhD and produced and mixed by Philip Larsen – BSDB member and DJ!

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Categories: Events, Highlights, Outreach, Science Art, Societies

BSDB 2018: Meet the speakers & chairs

Posted by , on 12 April 2018

Here at Development towers the excitement is mounting for the BSDB’s Spring meeting, which starts in Warwick on Sunday. The meetings are always great fun but this year promises to be particularly special – the society is celebrating its 70th  birthday and has assembled an all star cast of speakers.

 

 

The epic conference poster designed by Sally Lowell!

 

If you’re coming, be sure to check out The Company of Biologists’ stand and look out for Katherine Brown (Development Executive Editor), Seema Grewal (Development Reviews Editors) and Aidan Maartens (the Node Community Manager & Development Online Editor). We’ll also be accessible at the bar to talk about everything related to publishing, including preLights, the new preprints service.

As we looked at the line up we realised we’d interviewed many of the speakers and chairs for Development over the last few years, either in print or on screen, so have decided to share them with you here.


 

 

Abigail Tucker 

April 2016


Austin Smith

March 2016


Cheryll Tickle

April 2016


Claudio Stern

December 2017


Eric Wieschaus

May 2017


Gordon Keller

 

June 2016


Hiroshi Hamada

May 2017


James Briscoe

March 2018


Janet Rossant

April 2016


Jim Smith

August 2017


John Gurdon

May 2017


Kathryn Anderson

November 2016


Liz Robertson

August 2016


Mike Levine

October 2015


Olivier Pourquié

January 2010


Ottoline Leyser

October 2011


 

Patrick Tam

November 2010


Phil Ingham

June 2014


Steve Wilson

April 2010

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YEN Conference 2018: Abstract submission and registration is open!

Posted by , on 11 April 2018

***Abstract Deadline is Saturday, 14th April!***

Young Embryologist Network Conference 2018

14th May 2018

The Francis Crick Institute, London, UK

 

This year we are pleased to announce Professor Wolf Reik as our keynote speaker. His research group, based at the Babraham Institute, investigates the roles of epigenetic gene regulation in mammalian development.

We are also honoured to have Dr Susan Cox and Dr Germano Cecere as our outstanding invited speakers. Dr Susan Cox, from King’s College London, has a strong background in biophysics and has done quantitative analysis using super-resolution microscopy. Dr Germano Cecere, from the Institute Pasteur, focuses on the characterization of short-RNA-based mechanisms of epigenetic inheritance during animal development and upon environmental changes.

As it is traditional, we will end up the meeting with a panel discussion, this time dedicated to Publishing, Editing and Journals. There we will be able to hear the views and experiences of Jennifer McLennan, Head of External Relations at eLife, Robert Kiley, Head of Open Research at the Wellcome Trust, and Katherine Brown, Executive Editor of Development.

Finally, we are looking for additional talks and posters from PhD students and postdoctoral researches who work on the fields of Evo-Devo, Stem Cell Biology, Embryology or more general Developmental Biology. Experimental and theoretical approaches are equally acceptable.

Whether you want to submit an abstract for a talk or poster, or just attend the meeting, you can register here. Registration is free, and there will be prizes for the best talks and posters.

Deadline for abstract submission is midnight on 14th April 2018.

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deadline tomorrow – EMBO practical course on 3D Developmental Imaging (July 2018 – Portugal)

Posted by , on 10 April 2018

Dear colleagues,
Last day tomorrow to apply for the EMBO practical course on 3D Developmental Imaging (April 11th!).
Are you a developmental biologist struggling with 3D imaging (confocal, 2p, light-shet, OPT)? Don’t miss this opportunity: registration fee INCLUDES meals, course materials, hotel and local transport, all made possible by generous sponsorship from EMBO, the Gulbenkian Institute and our commercial partners. EMBO provides in addition a limited number of travel grants for candidates from Croatia, Czech Republic, Estonia, Greece, Hungary, Italy, Malta, Lithuania, Poland, Portugal, Slovakia, Slovenia, Spain and Turkey and Chile, India, Singapore and Taiwan.
for more information follow the link: http://meetings.embo.org/event/18-developmental-imaging
on behalf of the organizers,
Gaby G Martins
Head of UIC: Advanced Imaging Facility,
Instituto Gulbenkian de Ciencia – Portugal
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Postdoctoral Research Fellow position: Evolutionary Origin of Synapses and Neurons at Sars Centre in Bergen, Norway

Posted by , on 10 April 2018

Closing Date: 15 March 2021

There is a vacancy for a postdoctoral research fellow position at the Sars International Centre for Marine Molecular Biology (www.sars.no) in the research group headed by Dr. Pawel Burkhardt. The position is for a period of 4 years and is funded on the Sars Centre core budget. The Sars Centre belongs to the University of Bergen and is partner of the European Molecular Biology Laboratory (EMBL) (www.embl.de). The place of work will be at the Sars Centre. The starting date is negotiable but preferably no later than 01 September 2018.

About the project/work tasks:
The Burkhardt group combines comparative biological systems in the laboratory to understand when and how the first synapses and neurons evolved. The group is particularly interested in studying the origin and evolution of synaptic proteins (Burkhardt et al, 2011 PNAS; Burkhardt et al, 2014 MBE; Bhattacharyya et al, 2016 eLife). We are looking for a highly self-motivated and enthusiastic Postdoctoral Research Fellow with interests in evolutionary biology, neurobiology and cell biology. The project will focus on the characterization of synaptic protein homologs in sponges and ctenophores to better understand the evolution of first neuron-like cell types in animals. The successful candidate will undertake research with the possibility to use a variety of techniques, ranging from super resolution immunofluorescence and electron microscopy, biochemical methods (protein purification, co-IPs, and analytical ultracentrifugation), mass spectrometry to X-ray crystallography to study synaptic protein homologs in sponges and ctenophores. The successful candidate will work in close association with the group leader and other lab members with the aim to eventually contribute to the further development of the project in line with her/his interests.

 

 

 

 

 

 

 

 

 

 

 

 

 

Qualifications and personal qualities:

  • The applicant must hold a Norwegian PhD or an equivalent degree or must have submitted his/her doctoral thesis for assessment prior to the application deadline. It is a condition of employment that the PhD has been awarded
  • Strong motivation/enthusiasm to perform research at an internationally competitive level
  • Practical experience in biochemical techniques (protein purification, Co-IPs) and with different fluorescence imaging techniques is highly desirable
  • Specific experience with sponges or ctenophores is beneficial, but not essential
  • The ability to work both independently and to cooperate with others in a structured manner is essential
  • Proficiency in both written and oral English

About the position of postdoctoral research fellow:

The position of postdoctoral research fellow is a fixed-term appointment with the primary objective of qualifying the appointee for work in top academic positions. The fixed-term period for this position is 4 years. Individuals may not be hired for more than one fixed-term period as a postdoctoral research fellow at the same institution. Upon appointment, applicants must submit a project proposal for the qualifying work including a work schedule. It is a requirement that the project is completed in the course of the period of employment.

We can offer:

  • A professional, challenging and international working environment.
  • Well-equipped, modern laboratories and facilities
  • Salary at pay grade 57 (code 1352 / pay range 24, alternative 1) according to the state salary scale upon appointment. This constitutes a gross annual salary of NOK 490.900. Further promotions are made according to length of service. For particularly highly qualified applicants, a higher salary may be considered
  • Enrolment in the Norwegian Public Service Pension Fund (SPK)
  • A position in an inclusive workplace (IA enterprise)
  • Good welfare benefits

Your application in English must include:

  • A cover letter of the applicant’s research interests and motivation for applying for the position.
  • The names and contact information for at least two reference persons. One of these must be the the main advisor from the PhD programme.
  • CV including most relevant (i.e. first author) published papers and pre-prints
  • Transcripts and diplomas and official confirmation that the doctoral thesis has been submitted
  • Relevant certificates/references
  • List of any works of a scientific nature (publication list)

 

The application and appendices with certified translations into English or a Scandinavian language must be uploaded at JobbNorge (https://www.jobbnorge.no/en/available-jobs/job/150623/postdoctoral-research-fellow-positon-evolutionary-origin-of-synapses-and-neurons).

 

Application Deadline: 02 May 2018.

 

General information:

Detailed information about the position can be obtained by contacting: Group Leader Pawel Burkhardt, tlf.: +47 55 58 43 57, email: Pawel.Burkhardt@uib.no.

 

The state labour force shall reflect the diversity of Norwegian society to the greatest extent possible. Age and gender balance among employees is therefore a goal. People with immigrant backgrounds and people with disabilities are encouraged to apply for the position.

 

We encourage women to apply. If multiple applicants have approximately equivalent qualifications, the rules pertaining to moderate gender quotas shall apply.

 

The University of Bergen applies the principle of public access to information when recruiting staff for academic positions.

 

Information about applicants may be made public even if the applicant has asked not to be named on the list of persons who have applied. The applicant must be notified if the request to be omitted is not met.

 

Further information about our employment process can be found here.

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PhD position: Origin and Evolution of Synaptic Proteins at Sars Centre in Bergen, Norway

Posted by , on 10 April 2018

Closing Date: 15 March 2021

There is a vacancy for a PhD position at the Sars International Centre for Marine Molecular Biology (www.sars.no) in the research group headed by Dr. Pawel Burkhardt. The position is for a fixed-term period of 4 years and is subject to funding on the Sars Centre core budget. The Sars Centre belongs to the University of Bergen and is partner of the European Molecular Biology Laboratory (EMBL) (www.embl.de). The place of work will be at the Sars Centre. The starting date is negotiable but preferably no later than 01 September 2018.

About the project/work tasks:
The goal of the Burkhardt group is to reconstruct the evolutionary origin of synapses and neurons. The group is particularly interested in studying synaptic protein homologs in choanoflagellates, sponges and ctenophores. We are looking for a highly self-motivated and enthusiastic PhD student with interests in evolutionary biology, neurobiology and cell biology. The project will focus on when the protein signalling complexes required for synaptic activity first evolved and how they functioned at a molecular level (Burkhardt et al, 2011 PNAS; Burkhardt et al, 2014 MBE; Bhattacharyya et al, 2016 eLife). The successful candidate will undertake research with the possibility to use a variety of techniques, ranging from super resolution immunofluorescence and electron microscopy, various biochemical methods to X-ray crystallography to study synaptic protein homologs in choanoflagellates. The successful candidate will work in close association with the group leader and other lab members with the aim to eventually contribute to the further development of the project in line with her/his interests.

 

 

 

 

 

 

 

 

 

 

 

 

 

Qualifications and personal qualities:

  • The applicant must hold a master’s degree or the equivalent or must have submitted his/her master’s thesis for assessment prior to the application deadline. It is a condition of employment that the master’s degree has been awarded
  • Routine experience in standard molecular and cellular biology techniques is required
  • Practical experience in biochemical techniques (protein purification, Co-IPs) and with different fluorescence imaging techniques is highly desirable
  • Specific experience with choanoflagellates is beneficial, but not essential
  • The ability to work both independently and in a structured manner, cooperate with others and a possess high motivation and enthusiasm is essential
  • Proficiency in both written and oral English

About the PhD:

The duration of the PhD position is 4 years, of which 25 per cent of the time each year comprises required duties associated with research, teaching and dissemination of results. The employment period may be reduced if you have previously been employed in a recruitment position.

About the research training:

As a PhD Candidate, you must participate in an approved educational programme for a PhD degree within a period of 4 years. A final plan for the implementation of the research training must be approved by the faculty within three months after you have commenced in the position. It is a condition that you satisfy the enrolment requirements for the PhD programme at the University of Bergen.

We can offer:

  • A professional, challenging and international working environment
  • Well-equipped, modern laboratories and facilities
  • Salary at pay grade 50 (Code 1017/Pay range 20, alternative 8) in the state salary scale. Currently equal to NOK 436.900. Further promotions are made according to qualifications and length of service in the position
  • Enrolment in the Norwegian Public Service Pension Fund (SPK)
  • A position in an inclusive workplace (IA enterprise)
  • Good welfare benefits

 Your application in English must include:

  • A brief account of the applicant’s research interests and motivation for applying for the position
  • The names and contact information for two reference persons. One of these must be the main advisor for the master’s thesis or equivalent thesis
  • CV
  • Transcripts and diplomas showing completion of the bachelor’s and master’s degrees, or official confirmation that the master’s thesis has been submitted
  • Relevant certificates/references
  • A list of any works of a scientific nature (publication list)

 

The application and appendices with certified translations into English or a Scandinavian language must be uploaded at Jobbnorge (https://www.jobbnorge.no/en/available-jobs/job/150622/phd-position-origin-and-evolution-of-synaptic-proteins)

 

Application Deadline: 02 May 2018.

 

General information:

Detailed information about the position can be obtained by contacting: Group Leader Pawel Burkhardt, tlf.: +47 55 58 43 57, email: Pawel.Burkhardt@uib.no

The state labour force shall reflect the diversity of Norwegian society to the greatest extent possible. Age and gender balance among employees is therefore a goal. It is also a goal to recruit people with immigrant backgrounds. People with immigrant backgrounds and people with disabilities are encouraged to apply for the position.

We encourage women to apply. If multiple applicants have approximately equivalent qualifications, the rules pertaining to moderate gender quotas shall apply.

The University of Bergen applies the principle of public access to information when recruiting staff for academic positions.

Information about applicants may be made public even if the applicant has asked not to be named on the list of persons who have applied. The applicant must be notified if the request to be omitted is not met.

The successful applicant must comply with the guidelines that apply to the position at all times.

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The people behind the papers – Jinjin Zhu & Justin Kumar

Posted by , on 9 April 2018

Cell fate commitment relies on both activation of appropriate genes and suppression of inappropriate ones. Polycomb group proteins are known to be crucial epigenetic silencers of developmental genes, but the manner by which they control fate in vivo, and the relative roles of different Polycomb proteins in silencing, have remained unclear. A new paper in Development tackles this problem using the Drosophila eye a developmental model – we caught up with authors Jinjin Zhu and Justin Kumar, Professor of Biology at Indiana University in Bloomington, to find out more.

 

Jinjin and Justin

 

Justin, can you give us your scientific biography and the questions your lab is trying to answer?

JK I started my career in Drosophila eye development while I was an undergraduate in the laboratory of Karl Fryxell at the University of California, Riverside. He was a wonderful mentor and it was my time in his lab that convinced me that I wanted to be a professor one day. While I was in Karl’s lab, I read Don Ready’s seminal paper on the morphogenetic furrow (Ready et al., 1976) and was totally amazed by the cellular mechanism of pattern formation. From the images in the paper, I could see a field of undifferentiated cells being transformed into the periodic units of photoreceptor clusters right before my eyes. I knew then that I wanted to join his lab for my PhD studies. Being in Don’s lab at Purdue University as a graduate student was a privilege. He taught me how to love the fly eye for its own sake and to appreciate its intrinsic beauty.

I then went on to do my post-doctoral fellowship with Kevin Moses initially at the University of Southern California and then at Emory University. It was in Kevin’s lab that I finally settled on the research questions that still drive me today. I stumbled on what I thought to be an astonishing phenotype. Quite by accident I discovered that manipulations of the Notch and EGF Receptor signalling pathways led to the homeotic transformation of the eye into an antenna. While Hox mutants change entire body segments, I was able to observe fate transformations occurring within a single imaginal disc. When I joined the faculty of Indiana University I set out to understand how the fly eye-antennal disc is first set apart from the other discs (i.e. leg, wing, haltere, genital) and then how it is later subdivided into distinct territories such as the compound eye, ocelli, antenna, maxillary palps, and head epidermis. Over the years my research group has discovered that while gene regulatory networks promote fate specification, growth, and patterning, they also influence development by repressing alternate and inappropriate tissue fates. My current interests are to understand how the retinal determination gene regulatory network cooperates with signalling pathways and epigenetic complexes to prevent the eye from adopting distant fates such as the wing and more local fates such as the head epidermis.

 

And Jinjin how did you come to be involved with this project?

JZ I was really interested in the fate transformation caused by mis-expression of Hox genes when I was in college. When I joined the Justin’s lab, I did a genetic screen to find upstream regulators of eyeless in the developing eye disc. I knocked down eyeless and Sfmbt together and found this amazing eye-to-wing transformation phenotype. Meanwhile, Ali Ordway (second author) joined the lab and decided to screen other PcG proteins. She knocked down Pc and saw similar phenotypes. We were both fascinated by the images of these chimera tissue, in which the dorsal part of the eye disc turned into a wing disc while the ventral part remained as an eye disc, so we decided to figure out what happened to these mutant discs.

 

A selection of eye and wing discs from Fig. 1 in the paper.

 

How did you come to be interested in the phenomenon of transdetermination?

JK I got interested in transdetermination purely by accident. When I joined Don’s lab in 1991, I made sure that I read every paper that he had published. In one of his papers, he and Ricky Lebovitz had transplanted eye-antennal disc fragments into host larvae and then recovered the tissue after the host had emerged as an adult (Lebovitz and Ready, 1986). These experiments were aimed at understanding if the morphogenetic furrow was pushed or pulled across the eye field. I was really intrigued by the disc transplantation method used in his paper so I started reading about the history of this method, which I learned was pioneered by Beadle and Ephrussi in the 1930s. In the course of these readings I came across the work of Ernst Hadorn. It was from his papers that I learned about the concepts of determination and transdetermination. When Jinjin and I saw the eye to wing transformation, it reminded me of the fact that Hadorn remarked that the eye could only transdetermine into a wing. And it was at that point that I realized that the loss of PcG and Pax6 that we noticed gave the eye to wing switch might be the molecular explanation for the eye to wing transdetermination event that Hadorn observed many decades ago.

 

Third instar larval eye-antennal disc following Pc RNAi, from Fig. 2 in the paper.

 

Can you give us the key results of the paper in a paragraph?

JK In this paper we demonstrate that the Pax6 transcription factor and the Polycomb group (PcG) of epigenetic silencers prevent the eye from adopting a wing fate. This decision is made early in development during the last stages of embryogenesis and during the first larval instar. The eye transforms into a wing because the chromatin around the Antp locus fails to be compacted thereby allowing for its activation by the zinc finger transcription factor Teashirt (Tsh), which is normally expressed in and required for the specification of the eye. Our findings suggest that in addition to promoting the primary fate of a tissue or organ, gene regulatory networks must play defense and suppress the activation of inappropriate selector genes and/or entire gene regulatory networks. This repressive activity appears to require cooperation from epigenetic silencing complexes such as PcG.

 

Ectopic wings in Pax6 / Sfmbt double knockdown flies, from Fig. 5 in the paper

 

Why do you think the dorsal region of the eye might be more susceptible to wing transformation than the ventral region?

JZ This is a very interesting question and I think the answer lies down to the gene regulatory network controlling dorsal eye disc. 1) Wingless (wg), which is normaly required for wing development, is expressed in a higher level in the dorsal eye disc than in its ventral compartment. 2) engrailed (en) and cubitus interruptus (ci), which regulates A/P compartment of the wing disc also meets in the dorsal portion of the eye disc. Thus, the expression pattern of the endogenous genes in the dorsal eye disc contributes a lot to the eye-to-wing fate transformation. In addition, the dorsal eye disc is more susceptible to adopt wing fate because the level of Pax6 is significantly lower in the dorsal eye disc, especially in the region which will become the future dorsal head capsule. We have demonstrated that eye disc is more resistant to loss of Sfmbt function than the antennal disc. This is very likely due to the presence of Pax6 in the eye progenitor cells, because simultaneously knocking down Pax6 and Sfmbt induces the fate transformation.

 

It must have been particularly satisfying to discover the molecular underpinnings of phenomena first described in the pre-molecular biology age?

JK Yes, it was indeed satisfying to provide a modern perspective to an old problem/observation. In general I really enjoy reading the literature from the pre-molecular age – that is how I got interested in transdetermination in the first place. I also like scour the older literature for problems in eye development that were once studied but later abandoned due to the lack of the right genetic or molecular tools. If you look carefully enough, there is a wealth of such studies out there that are ripe for a modern perspective. For example, one of the exciting new areas of research in my laboratory today is the role that the peripodial epithelium, a tissue that overlies the eye-antennal disc, plays in development. There were several papers in the 1970s that suggested that its role was limited to the fusion of the two eye-antennal discs during pupal development. However, between 2000-2002 several laboratories provided evidence that signalling existed between these two tissues. But very little has been done since on this topic. Now several researchers in my lab are looking at the role that transcriptional networks in the peripodial epithelium play in promoting the fates of the eye-antennal disc.

 

Waddington’s epigenetic landscape (source)

 

I also like how researchers of times past thought about development. The Epigenetic Landscape Model by C.H. Waddington is one of my favourite examples. To represent the process by which individual cells make fate decisions, he proposed that a cell can take different paths during development with each path representing a journey towards a unique fate. He drew a diagram to represent this idea – in his drawing a ball rolling down a mountainside presented a cell on its way to adopting a final fate. This drawing and the concepts that it represents is very inspiring to me. One can think about how to push cells developmentally down different trails or how to push the cells uphill (de-differentiation) and then down another trail (fate reassignment). For my own work, I try to think of the ball not as a single cell. Instead, to me it represents the entire eye-antennal disc. My lifetime goal is to figure out how the eye-antennal disc is guided down the mountain and how it ultimately gives rise to five distinct tissues and organs.

 

Sfmbt loss-of-function clones in eye-antennal discs, from Fig. 5 in the paper

 

When doing the research, did you have any particular result or eureka moment that has stuck with you?

JZ Yes. For a long time, I couldn’t figure out why the eye disc adopts a wing fate but not any other tissue fates. I know it is likely due to the de-repression of Antp in the developing eye when PcG activity is impaired. However, why is Antp being activated when the epigenetic silencers are removed? This question was solved when a piece of data came back from another ongoing project, in which I found that over-expression of teashirt (tsh) was able to rescue the headless phenotype of Pax6 double mutant (Zhu et al, 2017). In those flies, little wings or thoracic bristles were found in the rescued head cuticle, so I wonder the endogenous expression of tsh might be the transcriptional activator of Antp when Pc is removed from the eye disc. I did an experiment to knockdown Pc and Tsh (Figure 3) at the same time and it turn out to be true. Tsh is required to activate Antp during the fate transformation. Although we do not know whether Tsh directly turns on Antp transcription or not, but at least we found some underlying mechanisms of the homology between the eye and the wing. I think the lesson here is to have multiple projects going on at the same time.

 

And what about the flipside: any moments of frustration or despair?

JZ For me, the frustration in this project is that isolating eye discs at early stages, such as in 1st and early 2nd larval instar, is almost impossible. Thus, we couldn’t verify our final model of PcG proteins being recruited to the genome at these specific stages using ChIP-Seq. I hope the techniques will advance and allow us to reveal how exactly these epigenetic regulators function in vivo.

 

What next for you Jinjin – I hear you’ve moved to Harvard?

JZ Yes, for my postdoctoral training, I will work with Dr. Robert Kingston, focusing on how PcG proteins control gene expression in mammalian system. The PcG proteins in mammals are much more complicated than in Drosophila. Different PcG complexes have multiple variants and each protein have multiple homologs. Thus, a diversity of possible mechanisms that might be used to generated a repressive state of gene expression, such as histone modification, chromatin compaction and higher-order genome organization. I think the eye-to-wing transformation project has brought me here, but I want to learn more about the underlying mechanisms of epigenetic regulators on the molecular level for my future research.

 

Where will this work take the Kumar lab?

JK My research group has started studying how the interplay between transcriptional networks and epigenetic complexes such as Polycomb, Trithorax, and SAGA controls fate specification within the eye-antennal. These studies build upon the findings of our paper described here in Development in which Pax6 and PcG proteins cooperate to repress wing fates from being adopted in the developing eye. Currently, we have evidence that Pax6 cooperates with Trithorax and SAGA complexes to control the number of antennae that are produced. We also have evidence that these same complexes work together to prevent the duplication of the entire eye-antennal disc. I am very excited about these preliminary findings and I think my lab, for the near future, will be focused on using the tissues within the eye-antennal disc to revisit several very basic questions – how does an organism control the fate, number, and placement of all of the organs that it needs for survival.

 

Finally, let’s move outside the lab – what do you like to do in your spare time?

JZ I travel with my husband during holidays and we have been to many national parks in US. We both like photographing wild animals. At home, I usually play piano and computer games if I don’t need to collect fly embryos.

JK  When I am not in the lab or my office I enjoy playing tennis. It is a terrific sport and a good outlet to release stress. I try to mix tennis and work as well whenever possible. When I am at home working on a paper or grant, I have the Tennis Channel on in the background. If there is an important match, I will stream it on my work computer as well. I also take my camera wherever I go and enjoy photographing wild life and outdoor scenery.


 

Polycomb group (PcG) proteins and Pax6 cooperate to inhibit in vivo reprogramming of the developing Drosophila eye. Jinjin Zhu, Alison J. Ordway, Lena Weber, Kasun Buddika, Justin P. Kumar. 

This is #39 in our interview series. Browse the archive here

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