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PhD-student Position in Thalamus Development / Tissue Engineering in Zebrafish

Posted by , on 21 September 2011

Closing Date: 15 March 2021

We are looking for a highly motivated PhD student to study development and regeneration of the thalamus in zebrafish.

Stroke is a prevalent and devastating disorder, and no treatment is currently available to restore lost neuronal function after stroke. In 10% of all stroke patients, a remote damage of the thalamus has been documented.

We utilize the genetic model organism zebrafish to explore innovative strategies for the improvement of regeneration by means of tissue engineering. The main focus is on the analysis of the development of the zebrafish thalamus and on the design, and testing of an 3D-cell culture system for reconstructing this complex brain part in-vitro. In order to optimize the strategy for tissue engineering, the project is aimed at reaching a new level of innovation which brings together (in a transdisciplinary approach) the main pillars of tissue engineering, namely 1) Developmental biology, 2) Microsurgery and Transplantation of tissues and cells, and 3) Material science. The project is set in a collaboration Dr Stefan Giselbrecht (IBG1, KIT; http://www.ibg.kit.edu/ibg1/57.php ).

The ability to quickly integrate into a team and to work within an academic research environment is essential. You must show initiative, should be well organized and must pay attention to detail. General laboratory management skills are required. You should have a very good degree in a subject related to molecular biology or cell culture. Previous experience with zebrafish would be an advantage.

The position is implemented in the Graduate School of the Biointerfaces Program of the KIT   ( www.bif-igs.kit.edu ) and is available for 3 years. The project could start any time.

For further information and/or application with CV and a short statement of your current research please contact:

Dr. Steffen Scholpp

Karlsruhe Institut of Technology (KIT); Institute of Toxicology and Genetics (ITG); Email: steffen.scholpp[at]kit.edu; WWW: http://www.itg.kit.edu/scholpp.php

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OIST Developmental Neurobiology Course 2011

Posted by , on 20 September 2011

Okinawa institute of Science and technology (OIST), situated on Okinawa Island is an ideal and inspiring place to discuss and learn science. The student participants and mentors of the developmental neurobiology course (July 17- 31, 2011) were from every corner of the globe. The course began with a wonderful talk about history of developmental neuroscience by David Van Vactor. M.A Price spoke about the signaling mechanisms during early development of Drosophila embryo.  James Briscoe from MRC London discussed about brain and neural tube development in vertebrates. Explained, “How does neurogenesis begin and how do neural stem cells maintain their fate”.  Chris Q. Doe from Oregon USA very elegantly described the mechanisms involved. Prof. Ischiro Masai from OIST Japan explained factors involved in spatial and temporal pattern of neurogenesis in Zebra fish retina. Kozo Kaibuchi from Nagoya University, Japan presented how internal and external signals regulate neuronal polarity. How do axon find their right partners and make neural connections, were the major focus of Elke Stien, Hitashi Sakano and J Huang. Students very enthusiastically and actively discussed their work too during the poster sessions in between.  After two days of intense lab work at the main campus, participants could also visit the labs of various groups. Personally talk to researchers and use the lab facilities for experimental work. Drosophila and Zebra fish were mainly used during the practical sessions in the course.  Students learned dye injection into embryonic Zebra fish eye to visualize the connections in wild type animals and then compare with the mutant animals. They got opportunity to do live imaging using Zebra fish and Drosophila embryos. Dissection of embryonic and larval Drosophila nervous system was also performed during the session. Participants could visualize and experience good microscopy by trying out their samples on microscopes from the Institute imaging facility. We also utilized and tried out different kinds of microscopes, which were provided by various companies in the workshop. Image analysis soft wares were also used for data analysis.

Second week of the course started with session on axon targeting and synapse specificity. Akiko Nose from Tokyo University taught how the connections are made and then refined to form a proper functional synapse. He showed some nice movies using optogenetics as a tool. The molecular mechanisms for dendritic self-avoidance and tiling, how is dendritic field size regulated and how are these maintained over time were the major themes of the Prof. Yuh Nung Jan’s talk. He also explained how fruit fly maggots avoid sunlight and described in detail how class IV dendritic arborisation neurons with elaborate dendrites tiling the entire body wall, act as light-sensing antennae. Van Vactor from Harvard school of Medicine shed light on the posttranscriptional machinery of growth cone involved in regulation of synapse assembly. He also discussed his recent findings from the lab about modelling spinal muscular atrophy, a severe neurogenic disease in Drosophila. Vijay from NCBS India explained, how the behaviour output is generated, once the neural circuits are established. He illustrated various assays to quantify behaviour deficits in mutant animals. At the end of the session Hitoshi Okamoto from RIKEN brain Institute described how Zebra fish could be used as a model to study vertebrate behaviour. He explained various behaviour assays to study learning and memory in Zebra fish. We relaxed and also got chance to show our non-scientific talents in the party and dinner at faculty house located nearby the seaside house. We also visited Castle and Aquarium during the course. After fun and enjoyment we attend talk by David Feldhiem, who described how graded expression of Ephrins is involved in generation of topography in vertebrate visual system. Bernando sabatini discussed about various high resolution imaging techniques utilised to study active synaptic connections. In the last of course Takeharu Nagai described broad range of fluorescent probes to image the synaptic structures and how to choose a good fluorescent probe for your experiments. Prof Hideyuki Okano discussed about iPSCs and their use in treating various neurological disorders and injury. Prof. Lee Rubin at the end of the course demonstrated how we could do large-scale drug screening in the lab in collaboration with pharmaceutical companies to treat challenging nervous system disorders. Last but not least, at the end of the last supper, we enjoyed the traditional Japanese dance and Judo Karate. In short this course was full of fun and learning.

You can read more about OIST and Course here

http://www.oist.jp/en/press-room/news-articles/151/1062-dnc2011.html

and watch this video also.

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Company of Biologists Workshop – Growth, Division and Differentiation – Day 1

Posted by , on 19 September 2011

In the series of The Company of Biologists Workshops a select group of roughly 30 scientists have gathered at Wiston House, West Sussex, UK, from September 18 to 21, 2011, to discuss the topic of “Growth, division and differentiation: Understanding Developmental Control”. This workshop series aims at fostering collaboration and conceptual advancement by bringing together researchers from various backgrounds and by facilitating close scientific exchange and cross-pollination to tackle challenges in current biological research.

We are a group of workshop participants – PhD students, postdocs and lab heads – who will be updating the Node with collectively written posts from the meeting. All speakers have approved the text before it was posted.

The scientific program of the opening afternoon session on Sept. 18 included a series of four excellent plenary talks followed by an evening poster session.

Ludger Hengst from Innsbruck Medical University (Austria) opened up with a talk elucidating the role of the CDK inhibitor p27, specifically its regulation by growth factor-related signaling molecules such as JAK2, exemplifying how tyrosine kinase signals can directly modulate cell cycle regulators and underlining the immediate clinical relevance, for example, in the context of JAK2 mutations in proliferative diseases such as polycythemia vera.

Jackie Lees from MIT presented work on the role of the Rb tumor suppressor in fate commitment and cancer. To elucidate tissue tropism and heterogeneity of Rb-associated tumors (here: osteosarcoma) this work exploited Rb-/-, p53-/- as well as Rb/p53 double mutants in Osterix-positive bone precursor cells [see Calo et al., 2010]. In an E2F-independent mechanism, Rb appears to potentiate Runx2 serving as an activator in osteogenesis. While Rb mutants did show surprisingly little effect, the combined Rb/p53 deletions not only lead to blockage of differentiation at the pre-osteoblast stage, but to a reversion toward even earlier stages, enabling this earlier stage mesenchymal precursor to give rise to an extended spectrum of derivatives including brown fat tissue tumors (hibernoma). Re-introduction of Rb reinstated terminal bone differentiation. This work also illustrated how the heterogeneity of tumors could arise from the dedifferentiation of more mature stages, so that tumors may contain cells with stem cell character without necessarily having arisen from a “cancer stem cell”.

While Ludger Hengst’s earlier presentation had primarily drawn attention to N-terminal interaction partners of p27 during late G1, the next talk by P. Renee Yew from the University of Texas focused on its C-terminal regulatory interaction. To this end, the work presented here introduced the Xenopus inhibitor of CDKs Xic1 (exhibiting both p21 and p27 features) and showed novel regulatory interactions with PCNA during S-phase of the cell cycle.

Peter Sicinski, Harvard Medical School, presented data on a cell cycle regulation-independent role of Cyclin-E on CDK5 in the generation and functionality of neuronal synapses and demonstrated its relevance for cognitive behavior in mouse models. In this context, CDK5 appears to partner with p35 and p39 to execute its essential function in neuronal differentiation and synaptogenesis. On the other hand, formation of a cytosolic complex with Cyclin-E and p27 appears to render it inactive and profoundly interferes with synapse formation and learning.

This concluded the first day’s session of oral presentations. A common thread were the identification of novel linkages between classic cell cycle machinery and a range of signaling pathways involved in the control of differentiation. So inspired, ample discussion continued throughout the evening poster session and beyond.

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Site update and dates for your calendar

Posted by , on 15 September 2011

Scheduled Node Maintenance:

This weekend (September 16-18) we’re upgrading the system that the Node runs on (WordPress), so you may not be able to access the site at times. Everything should be working again on Monday, but as always, if you spot anything unusual, let us know.

Update 18/9: the site upgrade is now complete, and everything works – as far as we can tell (again, do let us know if something seems weird.)

Dates for your calendar
In the recent survey about the Node, a few people asked to be kept up to date of various scholarships and registration deadlines. Here is a selection of upcoming dates of interest, but this is by no means an exhaustive list. We’ll try to do these once in a while, but don’t hesitate to write your own posts to let people know about similar deadlines, or leave a comment below. Also make sure to check the eligibility of all scholarships and grants before applying.

Conference registration deadlines.
Keystone announced a few upcoming deadlines for conference abstract submissions, including dates for the following meetings:
September 19 – abstract & scholarship deadline for “Angiogenesis: Advances in Basic Science and Therapeutic Applications” (January 16-21, 2012)
September 20 – abstract & scholarship deadline for “Epigenomics” joint with “Chromatin Dynamics” (January 17-22, 2012)
September 21 – abstract & scholarship deadline for “Cardiovascular Development and Regeneration” (January 22-27, 2012)
October 6 – abstract & scholarship deadline for “Gene silencing by small RNAs” (February 7-12, 2012)

Grants and fellowships:
October 11 – The NSF announced an application deadline of October 11 for Postdoctoral Research Fellowships in Biology (PRFB). For 2012 this fellowship is limited to certain areas: (1) Broadening Participation in Biology; (2) Intersections of Biology and Mathematical and Physical Sciences; and (3) National Plant Genome Initiative Postdoctoral Research Fellowships.
November 1 – Sir Henry Wellcome PostDoctoral Fellowships. See their website for other grant deadlines.
November 18 – NSF Graduate Research Fellowship Program (GRFP)

Travel funding:
September 30 – Deadline for The Company of Biologists Direct Travel grants, which fund travel for conference attendance.
October 31 – EDEN has research exchange funds available for US-based eco-evo-devo researchers (graduate students, postdocs, faculty).

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Final Day at The EMBO Meeting – Behaviour and lots of Movies!

Posted by , on 14 September 2011

The famous Richard Axel kicked off the last day in Vienna by presenting new data on how olfactory information is projected from the olfactory bulb to the cortex. After his keynote lecture, the talks in the plenary session continued with a focus on the brain and how it drives behaviour in different circumstances or environments and in different organisms – we watched flies, mice, fish and worms as they (mis)behaved. Especially David Anderson‘s movies of aggressive flies and mice had a certain entertainment value!

In the afternoon I found it hard to make a decision which of the five concurrent sessions to go to. I would have liked to attend the RNA session, Asymmetric Cell Division and Quantitative Principles of Morphogenesis, all at the same time! Since I had interviewed Eric Wieschaus and Marcos González-Gaitán at lunchtime, I picked their session on morphogenesis. I’ll be posting their insightful discussion here on The Node soon.

The session turned out to be a very good choice, full of fascinating movies of developing embryos. Eric Wieschaus talked about the mechanisms Drosophila embryos deploy to form two different kinds of folds during gastrulation: transient epithelial folds versus permanent internalisation, the latter ultimately leading to the epithelial-mesenchymal transition. How planar cell polarity is re-oriented during development of the fly wing was the focus of Frank Jülicher‘s talk, and Marcos González-Gaitán presented their impressive quantitative analysis and modelling of how growth is regulated by the DPP gradient in the developing fly wing. Benny Shilo continued the fly theme with their analysis of the mechanism that establishes the sharp Dorsal gradient in the early embryo.

The two final speakers represented the growing number of vertebrate researchers addressing questions of morphogenesis in a quantitative manner. Martin Behrndt, a PhD student in Carl-Philipp Heisenberg‘s lab, talked about the process of the squamous epithelium spreading over the yolk cell during zebrafish gastrulation, and how they took a biophysical and modelling approach to decipher this mechanism. Alexander Aulehla ended the session by presenting a quantitative live-imaging system to tackle the question of the oscillations of gene expression during somitogenesis in mouse.

All in all, I found the meeting very enjoyable. The evening events made it easy to socialise and network, and the scientific programme was at a very high level. The size of the meeting sometimes made it hard to pick one of the parallel sessions, but I think that’s a good problem, when there are simply too many interesting talks on offer! I’ll definitely try to be there in Nice in 2012.

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An Interview with Janet Rossant

Posted by , on 13 September 2011

I arranged to talk to Professor Janet Rossant after her talk at The EMBO Meeting here in Vienna. Janet is Chief of Research at The Hospital for Sick Children in Toronto, besides being a University Professor at the University of Toronto. Throughout her career she has been and still is making major contributions to the understanding of early development of the mouse embryo.

During the interview I took the opportunity to ask her about her career, her thoughts on the future of developmental biology and for some advice for young scientists. I hope you enjoy reading it as much as I did talking to Janet!

Why did you become a developmental biologist?

When I was an undergraduate many years ago in Oxford, I was taught by John Gurdon. John Gurdon is one of the world’s famous developmental biologists, still active and he did all the early work on Xenopus embryos, nuclear transfer embryos. He really got me excited about this idea of how it is that a single cell develops into a whole organism, and how you can begin to manipulate embryos, understand particularly the early stages. So I found that really exciting.

After I finished my undergraduate degree I thought I’d do research. So I talked to John, who suggested that I might talk to Chris Graham, who had started to do the same things in mouse embryos. Chris sent me to Richard Gardner, who was starting to make mouse chimeras, and I switched into mouse. I’m still interested in the fundamental question how the embryo develops, using the mouse system. And I must say that in the time – I switched to the mouse system in the late 70s, because I thought the Xenopus system was passé! Well, I was right about the mouse being an important system, but I was wrong about Xenopus, I apologise. I’ve stuck with the mouse ever since. Occasionally we’ve played a little with fish and various other organisms, and now of course we’re doing some stuff with human embryonic stem cells. Really that’s a direction we’re moving into, taking mouse development and trying to understand human development.

You’ve been involved in the public debate on the ethics of stem cell research and studying human development in Canada. What role did you have there and did you enjoy doing it?

Well, yes and no. There have been some very educational parts of that. As the human stem cell debate started to rage it became very clear to me that as developmental biologists and stem cell biologists we had to get involved. You can’t sit back and let the right wing politicians and lobby groups try to succeed.

I got involved through the CIHR, the funding agency for health research. They set up a panel to look at guidelines for human embryonic stem cell research, and I chaired that. So that would have been my first entree. With that we also had to appear before parliament and parliamentary committees. I’ve done quite a lot of public lectures in this area, to try to put forward the science, without necessarily getting into the ethical debate. At the end of the day, when people believe that a human embryo from the time of conception is worthy of all protection, you cannot argue against that. All I can argue is that we are in a situation where human embryos through IVF programmes are discarded, and isn’t it more ethically acceptable to use those discarded embryos to help save human lives in the future? I think that’s, the overall societal consensus pretty well worldwide and most people actually believe that that’s a doable thing.

You do have to educate people, and of course there are extreme groups who will not change their mind, but society can’t respond to extreme groups. Society as a whole has to come up with a consensus and we need public debate, and we need forums in which to do that. So I think it’s very important for scientists to get involved. Nowadays the CIHR guidelines exist, we have a regulatory environment, and human embryonic stem cell research is certainly proceeding in Canada. We also can undertake some forms of human embryo research, again with all the right conditions and approvals, unlike the States, where with federal funding you can work with existing cells, but you cannot use embryos or make new cells. In Canada we can, if approved, so it is a big advantage.

You’re British, but you ended up in Canada. Why, and have you ever considered coming back?

It’s simple, I married a Canadian. But it’s turned out to be very good; I’m still married to him, and I really enjoy having a career in Canada, it’s been great. I certainly looked occasionally and I obviously have a lot of colleagues and family still in the UK, associations I’d like to keep up. I don’t think at this stage I’m likely to move back in any major scientific role, but never say never, we’ll see!

What were the most exciting moments during your career?

First of all, we were very early involved in doing knockout mice. Oliver Smithies and Mario Capecchi had just shown that homologous recombination was possible in ES cells. My colleague Alex Joyner and myself knew that if we wanted to study genetics in the mouse, we needed to be able to knock out genes. So we got really excited, and she and I together worked on making our first knock out. Getting the first PCR to see that we had actually knocked out the gene was very exciting. It was Engrailed-2, a homeobox gene that Alex had worked on. In retrospect, we were lucky because the frequency we got was quite high – Alex had a postdoc working for months after that to knock out Engrailed-1, who could not do that at all! It turned out to be because there were some genetic variations between the clones, so eventually it worked. So we were very lucky. At the time it was so exciting, you could give a seminar and say you’ve managed to make a knock out and they’d be falling out the door and try to find out how you did it.

The other one was whole-mount in situ hybridisation in embryos. Today everyone knows all the beautiful pictures, we can do movies, we can do everything. But being able to actually see patterns of gene expression in embryos, as opposed to even sectioned materials, where it’s hard to reconstruct the complexity of the embryo, was fascinating. People had done whole-mount in situs in Drosophila, but in the mammalian system, we were having a lot of trouble. One of my postdocs worked very hard to get whole-mount in situs working in the mouse embryo – everybody does it with Brachyury first because it’s so easy to see, but we cranked it up to see other genes.

I remember Siew-Lan Ang, who was working at the time on looking for novel orthologues of Drosophila genes. She cloned Otx2, an orthologue of Orthodenticle, involved in anterior function in the fly. She took me to the microscope one day, and said, “What do you think of that?” I looked down the microscope and there was a late gastrula, early neural fold embryo in the mouse where you can’t really see anything, it all looks the same and there it was, front to end Otx2 positive, a strict boundary, nothing behind, amazing. Those kinds of things, they really grab you.

What advice do you give to your students and postdocs today?

First of all, you have to follow your passion, because at the end of the day you have to be grabbed by a question and by your research if you really want to drive it through. If the passion isn’t there, then you’re probably not in the right game.

Secondly, I think today life is complicated, and there are so many opportunities. So I really encourage people to think about the different kinds of tools that one can apply to a question. Try to combine, as we’ve heard it in these talks today, precision of looking at a question, or a stage, or a process with some of the tools of systems biology to try to get out an integrated model. I think that to me is the biggest challenge, whether it’s in the embryo, in stem cells or anywhere else. You don’t even always have to do the data yourself, there’s a lot of in silico data out there that you can capture.

Where do you think developmental biology as a field is heading?

It’s a mature field, interestingly. You see that at meetings. We certainly don’t have all the details, but we do have a good fundamental understanding of how to put a fly embryo together, a mouse embryo, a frog embryo. We do know the main players, and when I look back, we didn’t! Hox genes were cloned; nobody knew they were going to be conserved across evolution, and nobody believed they were really doing the same things if they were conserved. It’s hard to put your brain back at that time. Conservation of function across development has opened up our ability to look at the systems, and the similarities and the differences have really been worked out.

So I think that we are getting into the details of developmental pathways. It’s going to go in the systems approach, it’s going to go down into the cell biology – how cells are behaving in embryos. The area we’ve been trying to move into is to use it perhaps more directly in a translational sense. To me, the exciting things around embryonic stem cells and iPS cells is trying to combine developmental biology to drive embryonic stem cells to look at human development and model disease. And I really start to think can we use that for new drugs and new therapies.

So, developmental biology, as ever, sits in a very interesting convergence area, where you can move into many different directions. My personal direction is two-fold: Get into the details of that blastocyst, and the other is to move towards human development and disease.

But developmental biology still is fundamentally interesting. The other thing that people do, and I don’t really recommend my people to do it, is of course Evo-Devo – it’s fascinating, but it cannot easily get funded. Unless you’re a Howard Hughes investigator, it’s very hard. If that’s what people care about and want to do, that’s fine. I think it’s very important and exciting, but in the broadest sense it’s hard if you want to get forward, since it’s hard to get funded.

What were the biggest challenges you had to face during your career, and how did you deal with them?

When I started in Canada in 1977, there were not many jobs anywhere at the time, since a lot of the universities in the UK, US and in Canada had done a big expansion in the 1960s, so all those professors were sitting in their positions. I ended up at a small university, Brock University, teaching biology and doing research. So the biggest challenge I had was to go from Oxford and Cambridge to a small university in a country I didn’t know, trying to make contacts and all the rest of it.

The way I took on that challenge was to stick at it and to network, network, network! So I went out from Brock and I found people to collaborate with. I did a lot of collaborations with Verne Chapman in Buffalo and I collaborated with people in Toronto, so that’s how I ended up in Toronto. You can’t sit and feel sorry for yourself, you have to go out and do something about it. In those days I had to actually get in the car and drive around, these days you’d probably skype with people all over the world and stay in your lab. But actually, I think it can’t work exclusively that way, you still need that personal contact.

If you weren’t a scientist, what would you like to do?

I don’t ask myself that so much anymore, because I’m getting to the end of my career. So if I’d lost all my grants now I could just stop doing anything. But in the middle of your career, when things are looking rough, you ask yourself, “What would I do?” – I honestly don’t know. I certainly enjoyed teaching when I was at Brock; this is again a piece of advice to researchers, do some teaching! It’s awfully good practice for learning how to give talks and communication, because it’s all about communication.

However, I did get a bit tired of teaching first-year biology and sit on the exams and all that. So I’m not sure I’d have the patience to do that forever. I like to cook, but starting a restaurant – forget that! Maybe I could have a small catering company. I also do quite a lot of administration, since I run a big research institute, so I always got involved in science policy and science administration. So I guess fallback, that’s what I would end up doing. But at the end of the day, although I actually enjoy that, I can’t leave the research behind, it has to be part of the equation.

What would we be surprised to know about you?

That I like watching Top Gear!

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Post-doctoral position in Craniofacial development

Posted by , on 12 September 2011

Closing Date: 15 March 2021

A post-doctoral position is available immediately at the Cincinnati Children’s Hospital Medical Center in the laboratory of Dr. Samantha Brugmann to study vertebrate craniofacial development, patterning and disease. Applicants should possess a Ph.D. in a relevant field, such as Biology, Biochemistry, Genetics or another related discipline. Applicants should be highly motivated, independent and organized. Successful applicants will have demonstrated an interest in craniofacial research, a record of communicating research results via publications and/or professional presentations, and be willing and able to participate in collaborative, interdisciplinary research projects. Experience in developmental biology, biochemistry, bioinformatics, cell and molecular biology and avian/murine model systems is desirable. Preference will be given to applicants with a proven record in craniofacial research. Send your CV, research interests, long-term career goals and contact information for three professional references in one PDF file to samantha.brugmann@cchmc.org

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Sunday at The EMBO Meeting – (Mis)folding proteins and an entire session on blastocysts!

Posted by , on 12 September 2011

Here’s my brief roundup of day two at The EMBO Meeting.

It started with Susan Lindquist‘s excellent talk on how cells react to stress by synthesising lots of new heat-shock proteins, which help proteins to fold properly. Susan discussed Hsp90 in more detail. It’s a highly specific protein chaperone, helping diverse signalling proteins to fold. Hsp90 is expressed at levels about 10 times higher than required, and thereby serves as a buffer for genetic variation: In Drosophila, removal of one copy of Hsp90 uncovered effects of hidden genetic variation – about 1% of the flies had developmental defects, depending on their genetic backgrounds. The same was true for Arabidopsis. Susan presented a lot more fascinating data on the inheritance of environmentally acquired traits via prions, and you can find a short film on her here.

I then attended the afternoon session, “Balancing potency and specification in the embryo”, which was opened by Janet Rossant. She presented her lab’s work on the role of the Hippo pathway in the specification of trophoblast and inner cell mass. Next was Wolf Reik, who talked about the profiles of methylation and hydroxymethylation in ES cells. Miguel Manzanares compared the embryonic pluripotency network in chick and in mouse, concluding that it is an evolutionarily young concept in mammals. Next was Claire Chazaud‘s study on a later step in pre-implantation development, primitive endoderm differentiation. Takashi Hiiragi and his lab have developed an impressive live-imaging system to track cell behaviour and address stochasticity in gene expression in pre-implantation mouse embryos. Finally, Alfonso Martinez Arias talked about the regulation of the pluripotency network and how this modulates the balance between self-renewal and differentiation of mouse ES cells. After the session I had a chance to interview Janet Rossant, keep an eye out for it here on The Node!

In the evening I went to the Scientific Publishing Session, where Bernd Pulverer presented his thoughts and ideas on the future of scientific publishing. If you ever have a chance to go to one of his talks, take the opportunity – it’s definitely interesting and thought-provoking!

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The profession that isn’t

Posted by , on 10 September 2011

This post was my contribution to Science is Vital’s latest campaign on science careers. If you haven’t done so yet, I warmly encourage to get involved with the movement.

THE PROFESSION THAT ISN’T

As I enter the last 6 months of my first postdoc, I am confronted by a number of issues with having chosen (and continuing to choose) science as a career that I suspect apply quite broadly:

1. The UK has cut science funding in real terms significantly, and will likely continue to do so. Obviously, I think this is misguided, and the economic arguments in a knowledge economy in 21st century Western Europe are well worn, so I will not re-state them. It is, though, worth contemplating that not every country is adopting this approach, and I fear that our medium and long term competitiveness as an economy, not to mention as a health service, will struggle in comparisons with countries such as Germany that are taking the opposite approach to their science budget.

2. I am an average, middle class, married, soon-to-be 30-year-old, and have a close-knit family. My regular 12-hour days and weekend working are not very sustainable.

The arguments surrounding about point 1 are well worn, as I say, but point 2 needs significant re-statement in the corridors of power. Elaborating on my, I suspect typical, situation I hope will be informative.

I am fairly normal. In my more self-confident/self-indulgent moments I think I might actually be quite bright, with much to contribute to science, though I should point out that I am more often of the opposite opinion. But then, it isn’t like I spend my professional life on the lookout for incorrect conclusions not based on reasonable evidence or anything.

Seriously though, whether or not I as an individual am any good, I do not bear comparison as a scientist with people in other professions at my stage of career. The contrast with my wife is stark. She is a civil servant working for her majesty’s government in London. She is better paid than me, has a permanent contract, and is encouraged to pursue a balance in her life between work and leisure/family. I also like to remind her that she is less well educated than me, but I will humbly ignore that for now. In contrast, I know academics (and quite a few of them) who are of the opinion that a good work-life balance involves having a weekend off. Sometimes.

For those of us not in a position to drop everything and move to Boston for 5 years, it seems that science and life are not compatible, and are becoming even less so. At best it is like we have all the negatives of the private and public sectors with none of the benefits of either. At worst it is as if we are participating in a career structure that is fundamentally undermining of one of the UK’s truly outstanding endeavours. It is an issue that needs addressing.

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An Informative Career Day at The EMBO Meeting in Vienna

Posted by , on 10 September 2011

What shall I do, and once decided, how can I get my dream job after completing my PhD or postdoc, especially if I don’t want to become a group leader? Questions many of us ask ourselves sooner or later, and there are more options than the pessimistic among us might be able to imagine. These issues were addressed at today’s EMBO Career Day, taking place before the start of The EMBO Meeting, from which I’ll be blogging during the next few days.

There was a choice of four different workshops, of which one could pick two. The first I attended covered the process of applying for a job – “Cover letters, CV writing & interview skills”. Barbara Janssens, PhD career advisor at the German Cancer Research Center (DKFZ) in Heidelberg, Germany, started her workshop by telling us how she ended up in her current job. After having produced “no papers but two kids” during her postdoc, she decided that she would rather have a career outside of academic research. Barbara talked to many people about their experiences, and finally came across someone who suggested her to try at Wiley, where she started as a trainee and even ended up setting up a new journal! From there she went into teaching scientific writing, before finally becoming the PhD Career manager at the DKFZ.

Barbara and EMBO’s Gerlind Wallon both did a great job in giving useful advice, such as to always have an up-to-date CV (you never know when someone might ask for it), to network in an intelligent manner (know who has the power to hire you – it won’t be HR!), and stand out from the crowd by being involved in relevant extracurricular activities (as everyone applying for the job will have a PhD – that’s not enough).

Several of the participants had sent in their applications for a mock job advertisement we had received a while before the workshop took place. We evaluated these (anonymised) cover letters and CVs, and one brave volunteer even did a practice interview in front of the whole group. These exercises resulted in two precious “Dos and Don’ts” lists; the strongest advice I extracted from this was to always be aware of what’s relevant and what isn’t when presenting yourself.

After this excellent workshop I attended the Expanding Career Options lunch, where in an informal setting, I learned about careers in science policy, intellectual property and non-governmental organisations.

Finally, EMBO reports’ Sam Caddick guided us in explaining research in simple terms in the very interactive “Make Science Make Sense” workshop. Avoiding jargon and deciding on a single, simple message to describe your work turned out to be a lot harder than one might imagine, and it had the beneficial side effect of making me think more carefully about the relevance of my research. All in all, the EMBO Career Day gave me a lot of information and I can definitely recommend attending it next year in Nice!

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Categories: Careers, Events