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Node survey results

Posted by , on 5 October 2011

A few months ago we ran a survey on the Node to ask how you used the site, and if you had any suggestions. First of all, a big thank-you to all of you who took the time to answer our questions. As promised, we held a random draw among the survey participants: the winner was Gregory Shanower and he has been sent some gifts from Development and the Node. Congratulations!

So what did the survey tell us?

The complete report is 13 pages long. We’ll spare you that, but there were some recurring themes that we thought you might be interested in, so here is a short summary of the results – just to give you a brief idea of what we’ll be focusing on in the near future:

Who is reading the Node?
Let’s start by shattering a myth. One of the biggest misconceptions about the Node is that it’s “only for young people”. We hear this comment regularly but we now have the data to prove that it is not true. As the pie chart below shows, there is an equal distribution of PhD students, postdocs and PIs reading the Node. (Considering that in absolute numbers there are far more PhD students and postdocs than there are PIs, this means that, relatively speaking, the Node seems to be more popular among PIs than among younger researchers!)

Other facts about you, the Node’s readers:
* Almost 90% of the Node audience identifies as developmental biologists, but many also have interests in cell biology, genetics, stem cell research, or other areas of the life sciences.
* One in four Node readers has heard about the Node from a friend or colleague. Thank you for talking about us!

What are the most popular features on the Node?
Aside from the main content on the Node, the job postings and event listings are the most popular features. This is as good a place as any to remind everyone that you can add jobs and events if you have a Node account. You’ll receive posting instructions once your account is approved. Speaking of which…

Writing for the Node
About a third of the survey respondents has written posts or comments on the Node, posted job ads, or added events. Almost as many people indicated that they had not written anything on the Node, but would like to write something.

Of the people who had never posted on the Node, some said they didn’t have time, or that they were not confident about making their opinions public. Many others simply didn’t know what to write about, or didn’t know that they could, so we’ll be doing a bit more in the future to make it clear that anyone can post and we’ll try to set up a resource (perhaps an opt-in mailing list) to offer topics and ideas for Node posts for enthusiastic (current and future) Node contributors who suffer from writers block.

Keeping up with the Node
One of the most striking things that we found in the survey is that a lot of you are simply not able to keep up with everything on the Node, and more than half of you simply scroll through posts on the homepage. One immediate solution is that we’ll start doing monthly summary posts, highlighting some of the content from earlier that month. Here is the first one, for September 2011. We’ll also see if there is anything we can do in terms of layout and presentation, but that will be a more long-term plan.

Topics
Finally, we received a lot of great suggestions for features and for topics for future Node posts, and we’ll try to get as many of those on the site as we can. (Of course everything depends on people actually writing content, so it’s ultimately up to you.)

Several people made a suggestion that was quite straightforward and that we’ve already started in response to these suggestions: to do regular round-ups of upcoming deadlines for meetings, scholarships or grants. It’s hard to ensure such updates are complete, so if you see one of these posts and know of another deadline, feel free to post it yourself, or leave a comment on a previous deadline post. You don’t need an account to comment, and your email address will never be public.

If you have any questions about the survey we ran, or if you have some additional suggestions for the Node, feel free to leave a comment below.

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Postdoc position in gut morphogenesis

Posted by , on 4 October 2011

Closing Date: 15 March 2021

An NIH-funded postdoctoral position is available in the Nascone-Yoder laboratory at North Carolina State University (Raleigh, NC, USA) to study the role of non-canonical Wnt/PCP signaling in Xenopus gut morphogenesis. The successful applicant will elucidate the cellular and molecular basis of gut tube lumen formation, gut tube elongation and rotation, and/or digestive epithelial morphogenesis. 

We are seeking a self-motivated Ph.D. scientist with graduate training in cell and/or developmental biology, and at least one peer-reviewed publication.  A strong background in molecular biology must be demonstrated. Experience in Wnt signaling, aquatic animal models, immunohistochemistry, organ culture, and/or confocal microscopy is also highly desirable.

Interest in working in a multidisciplinary environment is a plus: other research in the lab involves drug discovery through small molecule screening [Chemistry & Biology, 18(2): 252-263], the development of photoactivatable loss-of-function technologies [J Am Chem Soc., 132(44):15644-50], and the evolution of unusual gut morphologies in non-model frog species [Science, 331(6015): 280-281].

For more information, please visit:       http://www4.ncsu.edu/~nmnascon/

North Carolina State University is situated in the heart of the Research “Triangle” (as delineated by the three relative locations of NCSU, Duke University & University of North Carolina at Chapel Hill), where many of the country’s leading technology, research and pharmaceutical companies thrive.  The Nascone-Yoder lab is located in the Department of Molecular Biomedical Sciences at the NCSU College of Veterinary Medicine, currently ranked 3rd among the top veterinary colleges in the nation, with state of the art resources for both basic and clinical research.

Review of applications will begin immediately and will continue until the position is filled. Please send a CV, including a list of three references, and a statement of research interest by email to:   nmnascon[at]ncsu.edu

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Today’s Nobel Prize is not immune to developmental biology

Posted by , on 3 October 2011

NobelPrizeThis year’s Nobel Prize in Physiology or Medicine has just been announced, and the winners are Bruce Beutler (The Scripps Research Institute), Jules Hoffmann (University of Strasbourg) and Ralph Steinman (Rockefeller University), for their research on the immune system. [Update 14:04: Just heard that Ralph Steinman died of pancreatic cancer this weekend. Committee still deciding whether to give him the award – they are not given posthumously, but committee picked winners before he died.]

Steinman discovered dendritic cells, while Beutler and Hoffmann studied the genetics behind immunity. At first glance, it does not seem to be directly related to developmental biology, but a closer look at Hoffmann’s and Beutler’s work in particular suggests differently:

Hoffmann started out studying developmental biology, and early in his career he researched the role of steroid hormones on insect development. However, if you look at his publication history, it shifts toward immunology in the mid-eighties. In 1987 he still published on locust development, but just a year later he had a paper on insect immunity, followed by many others.

Even when Hoffmann focused predominantly on immunology later in his career, developmental biology found a way to catch up with him.

In a 1996 paper in Cell, Hoffmann’s lab showed a connection between Drosophila development and immunity. Specifically, they found that Toll signalling pathways was involved in antifungal defence in flies. While Toll was already known at that point for its role in dorsoventral patterning, thanks to Christiane Nüsslein-Volhard’s work, Hoffman was the first to identify the role of Toll in the fly’s innate immune response. Soon after this, other groups, including Beutler’s, identified Toll-like receptors in mammals.

That’s not the only developmental connection to this year’s Nobel Prize. Of course, to have a functioning immune system, you need to form the components of that system, and this has been a recent area of interest for Nobel Laureate Bruce Beutler. A Nature Immunology paper from earlier this year describes the requirement of the ATPase ATP11C in B cell development in adult (but not fetal) bone marrow. The paper describes the identification of X-linked mutations in mice that interfere with B cell development, and linked the phenotype to recessive mutations in Atp11c, which encodes a P4-type ATPase. The precise molecular pathways by which ATP11C regulates B cell differentiation are yet to be determined, showing that even for Nobel Prize winners there is always more left to be discovered…

References:
LEMAITRE, B., NICOLAS, E., MICHAUT, L., REICHHART, J., & HOFFMANN, J. (1996). The Dorsoventral Regulatory Gene Cassette Controls the Potent Antifungal Response in Drosophila Adults Cell, 86 (6), 973-983 DOI: 10.1016/S0092-8674(00)80172-5

Siggs, O., Arnold, C., Huber, C., Pirie, E., Xia, Y., Lin, P., Nemazee, D., & Beutler, B. (2011). The P4-type ATPase ATP11C is essential for B lymphopoiesis in adult bone marrow Nature Immunology, 12 (5), 434-440 DOI: 10.1038/ni.2012

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This month on the Node – September 2011

Posted by , on 30 September 2011

What was new on the Node this month? Here are a few of the highlights from September:

EMBO meeting
Natascha Bushati attended the EMBO meeting, and wrote several posts as one of their certified bloggers, including two interviews that are definitely worth a read: one with Janet Rossant, and a joint interview with Eric Wieschaus and Marcos González-Gaitán. Below are some quotes, but there’s much more in the full interviews.

“At the end of the day, when people believe that a human embryo from the time of conception is worthy of all protection, you cannot argue against that. All I can argue is that we are in a situation where human embryos through IVF programmes are discarded, and isn’t it more ethically acceptable to use those discarded embryos to help save human lives in the future?”Janet Rossant

“We think of proteins and genes, but there are all also lipids and sugars, and we are ignoring them completely! Maybe the future could be to measure them, find out where they are and how they influence things. Chemistry could be the future.”Marcos González-Gaitán

“The reality is that model systems, at least in the fields we work in, exist not because it has anything to do with generality, but because experiments were easy to do in them.”Eric Wieschaus

 

Section of chicken and turtle ribsJapan
This past month saw several posts about (research from) Japan: Bruno Velutini summarized turtle shell development research from the Kuratani lab, Paul O’Neill featured a new study on transparent mice, also from the RIKEN institute, and Mubarak Hussain Syed wrote about the developmental neurobiology course he took this summer in Okinawa.

OIST course participants

 
Careers
* Thomas Butts expressed his concern about the future of UK science careers in his contribution to the latest Science is Vital campaign.
* An article summarizing the Node’s alternative careers posts was published in Development (and on the Node) at the start of the month.
* Finally, as always, check out the job listings on the Node for the latest openings in labs around the world.

Everything else:
Still want more? Browse the full September archive of posts to see the rest of the month!

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Phd Places fully funded Syracuse University Biology Department

Posted by , on 30 September 2011

Closing Date: 15 March 2021

Fully Funded PhD Places available in Developmental Biology and Neuroscience

Syracuse University, New York, USA.

Interneuron specification in the zebrafish spinal cord.

GFP labelled spinal cord neurons

The Lewis Lab recently moved to Syracuse University from Cambridge University in the UK. We use Genetics, Cell Biology and Developmental Biology to investigate how the correct number and pattern of different neurons forms in the vertebrate spinal cord, and how these neurons acquire their specific characteristics and functions.

PhD Projects are available to investigate the roles of specific regulatory genes (Transcription Factors) in determining different neuronal characteristics (such as neurotransmitter phenotypes and axon morphology) in the zebrafish spinal cord.
We primarily use zebrafish embryos as a model system, as the embryos develop outside the mother and are transparent and their relatively simple nervous system facilitates studies of neural circuitry and function. We use GFP lines (see picture) to study neurons in live and fixed embryos. As most of the genes involved in spinal cord development are conserved between vertebrates, the insights that we gain should be widely applicable, including to humans.
See http://biology.syr.edu/faculty/lewis/lewis_research.htm for more details
Application Deadline:
Deadline for August 2012 admission is January 2012.
Applications will be considered in the order that they are received – so if you are interested please apply soon! We will start assessing applications in December 2011.
Notes on Funding and PhD Program
Funding will be a mixture of teaching and research assistantships and is guaranteed for 5 years.
Students usually rotate in 3 different labs and then choose a lab for the PhD.

 

Information on other labs in the department can be found here: http://biology.syr.edu/directories/fac_dir.htm
For more details on the graduate program see http://biology.syr.edu/grad/graduate.htm
Syracuse has its own airport (15 minute drive from downtown) and is close to Toronto, New York City, Philadelphia, Montreal as well as the natural beauty of Upstate New York (Niagara Falls, The Finger Lakes, Adirondack lakes and mountains).
Syracuse University shares a campus with SUNY Upstate Medical University that has active research programs which include Cell Biology, Developmental Biology and Neuroscience http://www.upstate.edu/research/research_dept.php and the Lewis Lab is also part of their graduate program in Neuroscience (for which there is a separate application).

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October desktop calendar

Posted by , on 29 September 2011

It’s the end of the month, which means it’s time to download next month’s desktop calendar. Put it on your own computer and/or on the computers in your lab. There, now you’re all ready for October!

october_thumbnailMouse embryo showing Wnt1/Cre-YFP transgene (yellow), 2H3 antibody (red), and DAPI (blue). This image, taken by Elsa Denker of the Sars International Centre for Marine Molecular Biology, was one of the candidates in the fourth Development cover image voting round of images taken at the 2010 Woods Hole Embryology course.

Visit the calendar page to select the resolution you need for your screen. The page will be updated at the end of each month with a new image, and all images are chosen from either the intersection image contest or from the images we’ve featured from the Woods Hole Embryology 2010 course.

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Company of Biologists Workshop – Growth, Division and Differentiation – Day 2

Posted by , on 26 September 2011

-By Nitin Sabherwal, Eugen Nacu, Heike Laman, Irene Gutierrez Vallejo and Anna Kicheva

The second day of the workshop has finished and it is the reporting time now.

We had a wonderful day with fantastic talks and a nice walk around the area. The weather had also been beautifully supportive for these kinds of excursions and this added to the joy of walking around such a splendid place.

The first session on the second day had talks with the general question and theme- is it possible to control the cell fate decisions, particularly in context of neural development, by manipulating/controlling the cell cycle?

The session started with a talk by Philipp Kaldis who investigated the brain of CDK2/CDK4 double knock out (DKO) mice embryos. He found that the brain of these mice showed similar gross structures as the normal brain from control mice, however, the cortical plate and the intermediate zone areas showed reduced thickness indicating reduced differentiation, while the subventricular zone and the ventricular zone containing progenitors were largely unaffected. His work conveyed 2 important points:

1)   in the absence of CDK2 and CDK4, cyclinD will pair up with CDK1 and CDK6 instead.

2)   CDK2 and CDK4 have an effect on differentiation of neural stem cells. The effect is mediated by a change in the length of cell cycle and potentially by a direct effect of CDK2 and CDK4 on differentiation.

In the second talk, Federico Calegari, followed up on the theme of “cell cycle length (particularly the length of the G1 phase) being a determinant of cell fate during division of neural stem cells in the developing mouse brain”.  He started by describing the process of neurogenesis in mice, which follows thepath: apical progenitor -> basal (intermediate) progenitor -> neuron. He followed with explanation of previous work that supported this idea; work which showed that:

1) the G1 length of neural progenitors increases during development

2) cortical areas with higher neurogenesis have a longer G1 than proliferating progenitors

3) an artificial lengthening of G1 induces premature differentiation.

4) shortening of G1 by CDK4 and cyclinD1 inhibits neurogenesis and promotes the expansion of basal progenitors during embryonic development

And finally he showed the amazing results that it is possible to conditionally control the expansion of NSC in the adult mouse brain by temporarily overexpressing CDK4 and cyclinD1 (called 4D), which would initially expand the progenitor pool and then, after stopping the 4D overexpression by genetic manipulation, the expanded pool would eventually differentiate into the neurons. In essence, this new system allows the increase of neuron number in the adult hippocampus, which may have important implications for understanding the role of adult neurogenesis in cognitive function and controlling this process for therapy of neurodegenerative diseases

So we found out that controlling cell cycle length by CDKs and cyclins influences fate decisions in neural progenitors. But the next bigger question becomes- what is downstream of these Cyclin/Cdk molecules responsible for the fate change? And here came Anna Philpott’s insightful talk to our rescue.She looked at the posttranslational modifications of Neurogenin2 which drives neurogenesis. Neurogenin2 has multiple sites for phosphorylation and these different sites show different sensitivity to Cyc/CDK levels, with more sites being phosphorylated at a higher level of CDK. These phosphorylations were shown to negatively affect the stability of Neurogenin promoter binding in a cumulative fashion. Anna nicely showed that the efficiency of Neurogenin2 induction of neuronal markers is inversely proportional to the number of phosphorylated residues.

Linking the data together from Federico’s and Anna’s work, it is tempting to speculate that CDK4 and cyclinD1 induce proliferation of basal progenitors by decreasing the activity of Neurogenin2 and similar differentiation factors.

The last talk of the session was from Kristen Kroll who talked about the role of Geminin in setting up the epigenetic landscape for neural fate acquisition. Kris has long standing interests in how neural fate acquisitionis regulated by Geminin, which she cloned long time back in Mark Kirschner’s lab, as a regulator of both neurogenesis and cell cycle.  Kris nicely showed that knockdown of Geminin, a nuclear protein had no effect on the ability of ES cells to maintain or exit pluripotency, but when she overexpressed Geminin, it promoted neural fate acquisition, even in the presence of growth factors that normally antagonize neural induction. She followed this observation and showed that the mechanism behind Geminin’s ability for neural induction was due to its ability to maintain a hyperacetylated and open chromatin conformation at neural genes. She nicely showed that in ES cells, Geminin had the ability to enhance the histone acetylation on neural promoters and also it binds to the acetylated neural promoters and activate the expression of neural genes, leading to the neural fate acquisition caused by the Geminin overexpression. Thus Kris showed that Geminin functions as an intrinsic factor regulating the neural fate acquisition, by establishing an appropriate epigenetic signature on neural promoters.

During the Monday afternoon session we continued with two talks that link polarity and cell proliferation.  Dr. Helena Richardson presented her work in Drosophila eye imaginal discs about the role of lgl in proliferation.  lgl is a polarity protein that has been implicated in human cancers. Helena found that lgl mutant cells show an increase in proliferation without apparent defects in apical basal polarity. This proliferation mis-regulation is due to a perturbation of the Salvador/Warts/Hippo pathway, and she also presented her preliminary data on novel mechanisms that couple the polarity to the Hippo pathway.

Dr. Nancy Papalopulu spoke on her work on the early neural plate progenitor cells from Xenopus, In this system, cells with different apical-basal polarity properties showed different potentials for proliferation and differentiation. Her work shows that a membrane-bound, active form of aPKC, an apical polarity protein, is able to directly phosphorylate some components of the cell cycle regulatory machinery.  This caused protein destabilization with consequent effects on shortening the length of G1 phase, and promoting proliferation. She proposed that cell polarization is one mechanism that controls the length of the cell cycle, with consequent effects on the differentiation potential of the cells.

The fun (for scientists) continued in the evening with a mini grant writing session where five teams of randomly-paired discussants were asked to come up with a fundable proposal, that incorporated both team members expertise, in 15 minutes!! Proposals included microRNA regulation of oscillatory networks, proteomic screens on limb regeneration, uncovering links between patterning and proliferation, molecular requirements for NSC differentiation, and the importance of G2 phase.  Reflecting the current economic climate, none of the proposals was funded

 

 

 

 

 

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PhD Movie

Posted by , on 26 September 2011

Whether you’re familiar with the web comic or not, most of you will probably recognize your own current or past career as a graduate student in the new PHD Comics movie.

PHD Movie Trailer from PHD Comics on Vimeo.

It’s playing at university campuses across the world. If your city is not on the list, don’t fret: the website contains information on how to organise a screening at your own institute. Now if someone in Cambridge would like to host a screening, I’ll be there!

(See last year’s interview with Jorge Cham on the Node.)

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A Discussion between Eric Wieschaus and Marcos González-Gaitán

Posted by , on 22 September 2011

Eric Wieschaus is a Professor at Princeton University, USA. He was awarded the Nobel Prize in Physiology or Medicine in 1995, together with Christiane Nüsslein-Volhard and the late Edward B. Lewis, for their work “uncovering the genetic control of embryonic development”. Throughout his career, he has been interested in the mechanisms underlying patterning and morphogenesis in the early Drosophila embryo. You can find a short film featuring Eric, made at The EMBO Meeting here.

 Marcos González-Gaitán‘s main interest lies in fly development as well. He started his lab at the MPI-CBG in Dresden, Germany, and in 2006, his group moved to the University of Geneva, Switzerland. Marcos has made major contributions to our understanding of how morphogen gradients are formed and regulate tissue growth. In his work, he combines cell biology and biophysics to address developmental problems in a quantitative manner.

 

I spoke to Eric and Marcos at The EMBO Meeting in Vienna last week. We talked about model systems, tackling details versus fundamentals, the future of developmental biology, and how to successfully collaborate with non-biologists. I hope you’ll enjoy reading about their experiences and thoughts!

What are currently the big scientific goals in your labs?

EW  I think I’ve always been interested in things that I can see. For me the focus is on morphological change – how cells change shape, how they move. I’m trying to do something slightly more biophysical, partially because I have this prejudice that physicists never have to remember much detail and you can get to an understanding without knowing all the details.

MG  What we are increasingly caring about is how tissues proliferate and grow, also taking a biophysical and cell biological approach. Of course I care about the details, but I try to see what can be fundamental beyond the details. I don’t know if it’s possible, because the details are contaminating the fundamentals to a large extent.

EW  Yes, and we’ve almost never done well when we don’t look at details.

MG  Exactly.

EW  I think this is actually a little frustrating about the time we’re living in, because overall in the field, we have this desire to go to a systems level, and yet at least for me how to do science is really grounded heavily in particulars. Describing something in a general, global way isn’t as helpful for me….

MG  I have very strong opinions about this, where I might be completely wrong in fact, but that’s how I think these days about this problem. We all speak about model systems, like Drosophila and I also work in fish, and with these you want to do something that can be general to other animals.

So, you start off thinking that the general description is at the level of genes. I don’t know what’s Eric’s opinion is on this, but over my career, I realised that that’s not really true – beyond saying that this gene is doing signalling, and this other one is a transcription factor. Beyond that it’s difficult to say that what Ubx does in Drosophila is the same as the homologous gene in another animal.

Then I became a cell biologist, because I thought these details might be general. I studied endosomes and endocytosis thinking that I’m going to find the principles of how endocytosis interfaces with signalling, and that’s going to be general. But, you also find out that that’s not the case, at least that’s my perception. The same endosome in the next system has totally different properties. It’s not general.

So then I moved into some biophysics and physics, thinking the universality is going to be in these physical properties, whatever they are – tension, mechanics or scaling of gradients. And now I’m getting to the point where this is probably also not true! Why is this? – I think its probably evolution; in every single system evolution has tinkered around with properties. So then where is our value?

My thinking today is that the real value is the approach. You ask questions to have solutions to these questions, and you develop tricks, assays – intelligent and elegant ways of thinking about the problem differently. In your little system, where the details are very important, you come up with a solution. I don’t think this solution is going to be universal. But the value, in my opinion, is that someone working in a different system can look at my study in flies or in fish and say, this is an interesting way of looking at the problem. You can measure degradation rates by doing FRAP, and then they can use these tricks or this way of thinking to apply to their system – the solution is probably going to be totally different.

EW  One thing that struck me was, you said that model systems are model systems because we think of them as leading to generalities. That is actually what the word means. The reality is that model systems, at least in the fields we work in, exist not because it has anything to do with generality, but because experiments were easy to do in them. We stupidly call them model systems, but we really work in them because I can go into the lab and have a chance of setting up an experiment in a way that leads to a conclusion that’s admittedly very specific. However, you’re not going to be able to do those experiments in anything other than the five or ten model organisms. So the real generality maybe is close to what you are saying, that the generality is that model systems allow the approach, allow us to pursue a scientific approach.

The curious thing, as biologists, we worry a little about generality, but one of the accusations the physicists make about biologists is that we don’t see the forest for the trees. We see trees all the time, it’s all we see, we see little specific trees. And my physicist friends worry a lot about whether what we’re doing is important, or generalisable? They always ask that question, and my reaction with time has become: Oh yes, it’s going to be generalisable, and somebody really smart some time down the road is going to see all of this, it’s all going to fit together in some picture – maybe! But right now I’m happy with trees, I’m happy that I can go into the lab and get something that is admittedly specific about flies, but at least is probably true, and measurable.

MG  The question is whether the problems we are addressing now, are comparable to trying to understand the double helix etc. We have the tendency to believe that it’s not, because we’re so much into our thing. But then, very often when people look back, they say, “These guys were doing absolutely fundamental research!”, but at the time they were just looking into this very particular thing. I ask this question all the time, are we looking at something fundamental or just the details. Because when I started to do developmental biology, I thought all my colleagues who did botany were completely boring, because they were just describing petals and sepals, while I was doing something fundamental. But with age, I’m not sure that I’m not just looking at petals and sepals, I’m not sure…

EW  Well you know, some day, somebody will know, but we will fortunately not be around!

In your view, what will be the future of developmental biology?

MG  I organise retreats in my lab, which often have this question – What is going to be the future in 5, 10 years. And it’s funny, my students and postdocs in the lab would say that the future is physics and to measure things. I think that’s not the future, that’s now! I have the feeling that we are neglecting some other things that might be the future, and that is chemistry. We think of proteins and genes, but there are all also lipids and sugars, and we are ignoring them completely! Maybe the future could be to measure them, find out where they are and how they influence things. Chemistry could be the future.

EW  Maybe the future is ignorance! Meaning where the future is, is where we’re ignorant today. So, in a way, asking where the future is, is to ask what are the things that we don’t know. That’s the question I never ask because if I would make a list of all the things I don’t know, I’d just spend all my time making that list. Beyond the idea that it’s just in the things we don’t know today, your job as a scientist is to find something you don’t know and figure it out.

MG  I think the future is determined by new ways of looking at things and then you can just ask different questions. For example, when I started my PhD with Garcia-Bellído, I was looking at work that he was proposing, and that Eric was proposing, which back then, meant to look at cells. At that time, developmental biology was not looking at cells at all – I’m talking 1985. So I thought the future is in cells, single cells, and it became the future in the 90s and 2000s. The same now with physics, people started to do this, so that can change the way we look at things and we will find things that we don’t know now. In this sense the new way of looking at it is maybe chemistry, but perhaps other things that my students may see one day, but not me.

EW  I suppose if you were an administrator at a university deciding where you’re going to throw money, clearly one of the places that you could decide to throw money is in re-vamping chemistry departments, which many places now do. And that might be another test of where the future is – it’s where the people who have money are throwing it!

So they might set the future by throwing money there, because money usually makes things possible?

EW  Yes, and when things become possible, unless people are cruelly incompetent, something good comes out of… going to the moon.

How did you start your collaborations with physicists, and do you have advice for others who are trying to do this?

EW  I’m totally dependent on proximity. I don’t like talking on the phone, I type badly, I don’t write – I have to have people who are next to me, and I have to get along personally with them. What helps me a lot is that I’m at a university that has a very strong commitment to undergraduate teaching. It’s a great university with a lot of very smart people, but we all teach undergraduates, and we all often teach together. And so a lot of my contacts with physicists or with computer scientists are through my teaching. It’s odd, because you think, “God if I didn’t have to do so much teaching I could be really, really good and accomplish all kinds of stuff!”, but for me, teaching has been a very important part of my scientific development over the past 30 years. It’s brought me into contact with colleagues and people that I wouldn’t necessarily have found common ground with.

MG  First, I think that very often biologists, when they go into these quantitative things have an agenda. They want to be proved right, and then they use these guys to prove them right. That is a short-term agenda. I think doesn’t work. In my case, I probably started in this way, but my main collaborator, Frank Jülicher, he’s a very deep person, and we have had to take our time to understand each other. Fortunately, we never had time pressure – we saw a problem and stepped back to the fundamentals. And we went slowly. It takes time; to me not rushing is something important. Second, I’m discovering that there is a component of personal chemistry and respect that is very important. The physicist needs to respect, appreciate and value, and want to understand the experiment and the details of it. And you need to do the same with their science; you need to understand how they solve the differential equations at some point because there is value in that.

What career advice do you give to your students and postdocs?

EW  Work hard! Really, work hard, and be successful. Meaning that make choices always based on “Is this going to be successful?”, and be able to make that judgement. Be able to change, be flexible. You have to work really hard; you have to work on the weekends and all these things. But it’s not an excuse after a year or two to say, “Well, I worked really hard, somebody should hire me.” They’re not going to hire you because you work really hard; they’re going to hire you because you’ve actually accomplished something. And it’s impossible to accomplish something unless you work hard, and you have to finish stuff. You have to bring things to conclusions.

MG  I’m more of a dreamer, I’m not so pragmatic. What I tell them is, value your career of course, but be beyond that, you want to understand something, and that is the uncompromisable thing. Do what is important to you, do work hard indeed, but go for a problem, understand something. I think that is the fuel to work hard and to improve your career. It allows you to relax a little bit about this pressure that everybody is feeling now, about crises, problems; you just focus on your problem. If you cannot do this, it does not work.

EW  Yes, it’s really hard to work hard if you’re not passionate. It is the passion I guess that allows you to believe that if you work hard, you’ll accomplish something.

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Categories: Events, Interview, Research

In Development this week (Vol. 138, Issue 20)

Posted by , on 22 September 2011

Here are the highlights from the current issue of Development:

ApoE: a role in neurogenesis

Hippocampal neurodegeneration occurs in most forms of dementia, including Alzheimer’s disease. There is, therefore, intense interest in unravelling the mechanisms that underlie adult neurogenesis in this region of the brain. Now, on p. 4351, Steven Kernie and colleagues report that the cholesterol carrier apolipoprotein E (ApoE) is required for the maintenance of the neural stem/progenitor cell pool in the adult dentate gyrus region of the mouse hippocampus. The researchers show that ApoE is minimally expressed within the neural progenitor pool during early dentate gyrus development, when neural stem/progenitor cells are rapidly proliferating and differentiating into neurons. However, ApoE expression is markedly upregulated in adult dentate gyrus stem/progenitor cells, which proliferate more slowly. Notably, in ApoE-deficient mice, dentate gyrus neural stem/progenitor cells continue to proliferate rapidly, which ultimately depletes the neural stem cell pool. These and other data suggest that ApoE helps to regulate hippocampal progenitor cell fate and provide a mechanism by which human APOE polymorphisms might contribute to late-onset hippocampal neurodegenerative diseases.

 

A gutsy new model for intestinal development

The mechanisms that drive early intestinal development are poorly understood, but it is widely believed that the foetal intestinal epithelium is multilayered (stratified). Here (see p. 4423), Deborah Gumucio and co-workers overturn this dogma. By analysing cell polarity, cell shape and cell dynamics in the foetal mouse intestine, they show that the early intestinal epithelium is single-layered (pseudostratified) and undergoes interkinetic nuclear migration (a process seen in other pseudostratified epithelia, in which nuclei move from the basal to the apical surface of the epithelium during the cell cycle). They report that microtubule- and actinomyosin-dependent apicobasal elongation drives the growth of intestinal epithelium girth that occurs at mid-gestation and that villus formation occurs by expansion of the apical surface. Finally, they show that, as in the pseudostratified neural tube, the actin-binding protein Shroom3 is crucial for the maintenance of the foetal intestinal epithelium. These results suggest a new model for intestinal morphogenesis in which the epithelium remains single-layered and apicobasally polarised throughout early intestinal development.

 

Excretory systems: regeneration and evolution

Because planarians can regenerate a complete body from a tissue fragment they present a powerful system in which to study cell, tissue and organ regeneration, and to look for conserved developmental mechanisms. Peter Reddien and colleagues now describe a regulatory programme for the regeneration of the planarian Schmidtea mediterranea excretory system, the protonephridia (see p. 4387). The S. mediterranea protonephridia consists of tubules, which are dispersed throughout the animal’s body, two types of tubule-associated cells, and ciliated terminal cells, which drive filtration from the extracellular space into the tubule lumen. The researchers use RNAi screening assays and microarray analyses to show that Six1/2-2, POU2/3, hunchback, Eya, Sal1 and Osr, which encode transcriptional regulators, are involved in protonephridia regeneration. Notably, apart from hunchback, all these genes are also required for vertebrate kidney development. Moreover, the researchers show that planarian and vertebrate excretory cells express several homologous proteins involved in reabsorption and waste modification. Together, these findings suggest that metazoan excretory systems share a common evolutionary origin.

 

TPR-GoLoco moves to orientate division

Cell divisions must be correctly oriented, usually through mitotic spindle orientation, to ensure normal development. Extrinsic signals sometimes control division orientation, but how? To address this question, Adam Werts and co-workers have been investigating the localisation of the TPR-GoLoco protein pair GPR-1/2 in C. elegans embryos (see p. 4411). In four-cell stage embryos, GPR-1/2 is enriched at the junction between two cells – the endomesodermal precursor EMS and the germline precursor P2 – and both cells align their division towards this cell-cell contact. The researchers report that, unexpectedly, GPR-1/2 distribution is asymmetric in P2 but not in EMS. Instructive intercellular signalling through MES-1/SRC-1 determines the asymmetric localisation of GPR-1/2 in P2, they report, and this distribution (which is established through GPR-1/2 destabilisation at one cell contact, and its diffusion and stabilisation at another cell contact) is important for normal development. Overall, these results identify the dynamic localisation of GPR-1/2 as a key mediator of cell division orientation in response to external signalling.

 

Mediator complex sizes up plant development

Final organ size is regulated by coordinated cell proliferation and cell expansion, which control cell number and cell size, respectively. Little is known about how organ size is determined in plants, but now, on p. 4545, Ran Xu and Yunhai Li report that MEDIATOR COMPLEX SUBUNIT 25 (MED25) regulates organ size in Arabidopsis thaliana. The researchers discover this new role for MED25 – a gene that controls shade avoidance and stress responses in Arabidopsis and is involved in transcriptional regulation – through a genetic screen for mutations that enhance the floral size of the da1-1 mutant; DA1 is a negative regulator of seed and organ size that restricts cell proliferation. Loss-of-function mutants in MED25 form large organs, they report, whereas plants overexpressing MED25 have small organs. These alterations in organ size are caused by changes in both cell number and cell size. Thus, the researchers suggest, MED25 acts within the transcriptional machinery to regulate plant organ size by restricting both cell proliferation and cell expansion.

 

Axons set oligodendrocyte myelinating potential

Myelination facilitates the transmission of electrical signals along axons and ensures their long-term viability, and most axons in the central nervous system are eventually myelinated by oligodendrocytes. But are the timing and extent of myelination regulated by the intrinsic properties of oligodendrocytes or by axons? To address this question, David Lyons and colleagues examine myelination by single oligodendrocytes in vivo in zebrafish (see p. 4443). As in mammals, zebrafish oligodendrocytes myelinate either a few large caliber axons or numerous smaller axons, they report. They further show that the large caliber Mauthner axon is the first axon to be myelinated. Then, using two independent genetic manipulations, the researchers generate zebrafish that have additional Mauthner axons. In these fish, oligodendrocytes that typically myelinate one Mauthner axon in wild-type fish myelinate multiple Mauthner axons, and oligodendrocytes that exclusively myelinate smaller caliber axons in wild-type fish also myelinate the supernumerary Mauthner axons. Thus, the researchers conclude, individual axons regulate the myelinating potential of single oligodendrocytes.

 

Plus…

 

The Wnt signaling pathway controls lineage specification and axial patterning in vertebrate embryos and, as reviewed here by Sergei Sokol, recent studies have uncovered a new mode of Wnt signaling that acts to maintain pluripotency in embryonic stem cells.
See the Review article on p. 4341

 

The International Workshop on Molecular Mechanisms Controlling Flower Development took place in Italy in June 2011. As reviewed by Francois Parcy and Jan Lohmann, the results presented at this workshop underlined how mechanistic studies of both model and diverse species are deepening our understanding of the cellular processes involved in flowering.
See the Meeting Review on p. 4335

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