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Genetics Unzipped: Genes, brains and the mind: How much of your personality is encoded in your DNA?

Posted by , on 14 July 2022

Two faces blurring into each other

“A lot of the variation in the big five personality traits is due to genetic differences and there’s suprisingly little effect of the family environment. It seems the way you’re raised doesn’t really affect those particular traits”

Kevin Mitchell, geneticist and neuroscientist

In the latest episode of the Genetics Unzipped podcast, we’re exploring genes, brains and the mind, as we ask how much of our personality is innate, and whether anything we do as adults can change who we fundamentally are. Presenter Dr Sally Le Page sits down with Kevin Mitchell, an Associate Professor of Genetics and Neuroscience at Trinity College Dublin and author of the book Innate: How the wiring of our brains shapes who we are.

Genetics Unzipped is the podcast from The Genetics Society. Full transcript, links and references available online at GeneticsUnzipped.com.

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Research Highlight: Understanding the Key Role of a EMT Master Regulator, Twist1, during Mouse NCC Delamination and EMT.

Posted by , on 11 July 2022

Epithelial to mesenchymal transition (EMT) is an essential process in multiple steps of embryogenic morphogenesis and various pathological conditions. As an example, EMT is involved in gastrulation and neural crest cell (NCC) development during embryogenesis. EMT is also crucial for wound healing, tissue fibrosis and cancer progression. In addition to the cellular and molecular changes facilitating the transformation from epithelial cells into mesenchymal cells, EMT has also been associated with stemness, therapeutic resistance and tumor heterogeneity specifically in the context of malignancy. Due to the inherent differences between different species, cell types and biological contexts, there are variations within phenotypic changes and the underlying molecular mechanisms of different EMT programs.

NCC are an embryonic progenitor cell population that gives rise to numerous cell types and tissues, such as craniofacial bone and cartilage, in vertebrates. Pre-migratory NCCs delaminate from the neuroepithelium via EMT, following which NCCs migrate throughout the embryo and undergo differentiation. Currently, we have limited understanding of the EMT process that gives rise to migratory NCCs in mammals because many NCC EMT related findings in non-mammalian species have not been successfully replicated in mammalian species.

Transcriptional factor Twist1 is one of the major master regulators shown to be involved and to play an important role in EMT throughout both development and carcinoma progression. Previous studies on the role of Twist1 during mammalian NCC development using various mouse models have been thoroughly summarized and reviewed (Zhao and Trainor, 2022). In short, Twist1 null mice exhibit embryonic lethality around E11.5 associated with craniofacial defects such as malformed branchial arches and facial primordia (Chen et al.,2007; Chen and Behringer, 1995). Upon careful experimental testing, these phenotypes were believed to be caused by abnormality of NCC migration and differentiation. Consistent with these in vivo findings, mutations in Twist1 in humans lead to Saethre-Chotzen syndrome, which is characterized by craniosynostosis and cleft palate. In a recent publication “Twist1 Interacts with Beta/Delta-Catenins During Neural Tube Development and Regulates Fate Transition in Cranial Neural Crest Cells”, however, Bertol and her colleagues further depict the neuroectodermal expression profile of Twist1 during early mouse embryogenesis and illustrate potential functions of Twist1 in mouse cranial NCC delamination and EMT.

Key findings

  1. During mouse embryogenesis between E8.5 and E9.5, Twist1 is detected in vesicle-like structures on the apical side of the neuroepithelium/neural plate. Interestingly, such apical expression of Twist1 coincides with the expression pattern of B-catenin and Claudin-1 suggesting an association of Twist1 with adherens and tight junctions in the neuroepithelium. Furthermore, a physical interaction between cytosolic Twist1 and B-catenin is demonstrated by co-immunoprecipitation. When Twist1 is deleted in whole embryos, apical B-catenin in vesicle like structures become diffused and mostly cytosolic in the apical neuroepithelial cells of the neural plate.
  2. Consistent with other studies, Twist1 is also found to be expressed in migratory cranial NCCs at E8.5, E9.5 and E10.5. When Twist1 is conditionally deleted in cranial premigratory NCCs at early E8.5, cranial migratory NCCs are observed throughout the embryos, but there is a fewer number of migratory NCCs in the frontonasal and pharyngeal processes between E9.5 and E11.5. This observation is later confirmed by severe frontonasal prominence defects and neural tube closure abnormalities.
  3. Examinations of remaining post-delamination migratory NCCs in neural tube explants from Twist1 conditional knockout mice reveal that the majority of migratory NCCs exhibits epithelial morphologies, significant cell-cell adhesions and continuous junctional signals of ZO1. Moreover, migratory cranial NCCs in vivo show increased E-cadherin expression, and Specc1 (an actomyosin cytoskeleton regulator) expression is reduced in the hindbrain and first pharyngeal arch. These data indicate disrupted EMT during the delamination of cranial NCCs in an absence of Twist1 expression.
  4. To study the importance of Twist1 phosphorylation in craniofacial tissue development, the researchers have also generated four Twist1 phospho-incompetent mouse lines. Phenotypic characterizations of these mutants demonstrate that S18/20 and S68 phosphorylation sites are critical for craniofacial development.

In summary, the paper contributes a valuable collection of data to fill our knowledge gap of how NCC delamination and EMT are regulated in mammalian species. To my knowledge, this is the first publication that directly studies the role of Twist1 specifically in early NCC development via using Wnt1-Cre and Wnt1-Cre2 driven conditional knockout mouse models. Although I find some parts of the paper slightly confusing regarding the interpretation of certain data and the relevance of IRF6 data to the rest of the paper, the data itself is still very intriguing and thought-provoking. Interestingly, Zeb2 null mutant mouse embryos exhibit similar phenotypes of persistent E-cadherin expression in migratory cranial NCCs (Putte et al., 2003). Similar to Twist1, neither Snail1 or Zeb2 conditional knockout in pre-migratory NCCs completely inhibits NCC delamination and EMT (Murray and Gridley, 2006; Rogers et al., 2013). These previous findings in combination with the proposed function of Twist1 in the completion of mouse cranial NCC EMT could suggest that perhaps EMT master regulators act synergistically in waves to promote the complete transition from neuroepithelial cells to mesenchymal migratory NCCs.

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Developmental Biology in the Ocean – a crash course in comparative invertebrate embryology

Posted by , on 8 July 2022

A morning excursion to the local tidepools – Instructor Nat Clarke (lower right) identifying species for students and guest Dan Rokhsar (photo credit: Azalea Martinez Jaimes).

In June 2022, I had the pleasure of teaching a short course on comparative embryology with Chris Lowe and Laurent Formery at Stanford University’s Hopkins Marine Station. Our mission:  to take a mix of grad students and postdocs from disciplines across the biosciences, introduce them to diverse developmental mechanisms in a broad sampling of organisms spanning the animal tree of life, and then release them to pursue research projects of their own design.  

What is the value of a course like this? And why are marine stations an ideal setting? Simply put, animal diversity showcases countless natural experiments – evolutionary experiments in diverse body plans, novel cell types, complex life history strategies, and more. Since life evolved in the ocean, the seaside environment allows unrivaled exploration of this biodiversity: where else offers ready access to embryos of 15 animal phyla within steps of the classroom?  

I could, of course, describe at length what students might get out of such an experience, but instead I’ll give it to you directly from the source. Below, a few of our students, and my co-instructor, share their reflections and favorite moments from the course. 

Student Perspectives:

Charlotte Brannon:

A colony of a red encrusting bryozoan growing on a shell (left; photo credit: Charlotte Brannon), with a close-up view of individuals enclosed in their ‘houses’ (center; photo credit: Lauren Lubeck). A confocal micrograph of individual zooids of another bryozoan species (right; photo credit: Joel Erberich) 

There is so much biology hiding in non-model organisms, especially in the ocean, and it was enlightening to immerse myself in it during this course. Partly, this happened through tidepooling and digging for worms in mud flats. Tidepooling was surprisingly challenging at first. Our instructors could pick up a rock, identify five species on it, and tell you anything you wanted to know about any of them. Meanwhile, the most exciting thing I could find was a floating, white creature which turned out to be… a seagull feather. I ended up collecting a seemingly boring shell with some red stuff encrusted on it. Surprisingly, a quick look under the dissection scope revealed this crusty red stuff to be a Bryozoan colony! Unknowingly, I had collected a fascinating marine invertebrate. Similarly, when we later visited mud flats, a classmate and I found what seemed to us like a very average worm. We later learned that it was actually Leptosynapta albicans – the burrowing sea cucumber. I learned my lesson: when immersed in nature, you must actively try not to find something interesting.

Student Lauren Lubeck trying her hand at microinjection (left). At right, a single blastomere injection of a two-cell nudibranch embryo of the species Berghia stephanieae (photo credit: Nat Clarke)

Exposure to a wide range of marine invertebrates made me more excited about developmental biology because it highlighted how much we don’t know! I am excited about all that non-model organisms can teach us, and eager to explore the mechanics of development in a range of systems. Of course, this is easier said than done. As we learned, having the right tools to work with an organism is crucial, and sometimes that means building your own. The short timeline of the course forced us to be creative with our resources and think carefully about the appropriate tools. I also appreciated seeing multiple approaches to the same experiment. For example, our guest instructor, Brady Weissbourd, demonstrated his strategy for injecting Clytia eggs, which differed in many subtle ways from our instructors’ approach for injecting echinoderm eggs. This made me realize how important it is to tailor your experimental approaches to your organism. 

Lauren Lubeck:

As a marine research station, Hopkins Marine Station is one of only a few special places where scientists can collect, observe, and perform experiments on a wide diversity of marine invertebrates. It was an incredible experience to be immersed in the marine environment at Hopkins. Unsurprisingly, almost every guest instructor wanted to spend time outside looking for their favorite organisms, and the students went tidepooling on our own many times. We learned the importance of understanding the ecology of our target species. Want choanoflagellates? Look for small, dirty looking pools. Want acoels? Turn over rocks in the sandy sections of tidepools. Want fat innkeeper worms? Look for the holes marking the entrance to their U-shaped burrows. Working where our favorite intertidal invertebrates live created a unique opportunity to learn more about them. 

An 8-armed Dendraster excentricus pluteus larva (left, image credit: Lauren Lubeck). Confocal micrographs of Dendraster ex. plutei larvae. Middle: DAPI (blue), WGA (yellow), phalloidin (magenta) (image credit: Lauren Lubeck). Right: DAPI (blue), acetylated tubulin (green), serotonin (magenta) (image credit: Nat Clarke)
Circulating blood in the tunicate, Botryllus (A. Jaimes)
Nerve net of a transgenic jellyfish (N. Martinez)

A highlight for me was the connections I made with fellow students. Each student arrived with specific interests and biological questions in mind. I loved that we all found ways to investigate our favorite questions while using species that were new to us. While each of us pursued our original question, we also were spontaneously inspired by a new animal or phenomenon we encountered. For example, Nabor Vazquez Martinez usually studies aspects of the nervous system in C. elegans, but he found Brady Weissbourd’s Clytia jellyfish fascinating and decided to examine their nervous system too. Azalia Martinez Jaimes is interested in stem cell differentiation and found an interesting model in the tunicate Botryllus, which continuously builds new adults from growing buds filled with stem cells. 

A child observing Chrysaora sea nettles in the jellies exhibit at the Monterey Bay Aquarium (photo credit: Nat Clarke)

The “Behind the Pipes” tour of the Monterey Bay Aquarium was another highlight. As we were led through the ctenophore facility by Senior Aquarist Wyatt Patry, I learned that they grow the same algae we were feeding our larvae in class, but I was amazed by the massive scale of production. Once we entered the main exhibit to see the ctenophores and cnidarians on display, I was overcome with a combination of awe and excitement. It was moving to see how our research interests meshed with the education and outreach of the Monterey Bay Aquarium.

A. S. Jijumon: 

“In all things of nature there is something of the marvelous” — This is a quote from Aristotle that I saw at the Monterey Bay Aquarium during our class visit. In this course, I realized that there is much to learn and explore in marine organisms, and that it can be more straightforward to make novel and important observations in unexplored areas.

Sea cucumber ossicles (photo credit: Charlotte Brannon). DIC image and a confocal micrograph of a sea cucumber larva, DAPI (blue), tubulin (green), phalloidin (red) (photo credit: AS Jijumon).

I did my undergraduate education in India, and what I studied in my developmental biology classes were mostly theories and text book images. Through this course, for the first time, I got a practical demonstration of the developmental stages of multiple marine invertebrates and observed their morphogenesis over time. I got a chance to really experience the origin of classical experiments in embryology and developmental biology. Observing the wide diversity of organisms we could collect straight from tidepools, and then performing wet lab experiments on these creatures using microscopy and molecular tools was a fantastic experience.

Image of a sand dollar (Dendraster excentricus) egg during fertilization (photo credit: AS Jijumon).

My favorite observation was with the sand dollars (Dendraster excentricus) we worked with on our first day. We collected eggs and sperm by injecting KCl into their gonads. Subsequently, I added diluted sperm onto an egg and watched on the microscope. That was the first time I witnessed the event of fertilization occur in real life, and I felt goosebumps and got the impression that I acquired the power to manipulate life, which was a memorable moment. I would like to share this experience with other science enthusiasts in the future.

Instructor perspective – Laurent Formery:

Confocal micrograph of a nudibranch, Corambe sp. DAPI (cyan), phalloidin (yellow) and WGA (pink). (Photo credit: Joel Erberich)

This course was one of my first teaching experiences, and it was an awesome one. We wanted to promote exploration and experimentation using the incredible resource that we had right outside the classroom – the ocean. From tidepools, mudflats and plankton nets we collected species spanning over a dozen animal phyla (and some of our closest unicellular relatives, too), and we spawned, observed and manipulated them in the classroom. The combinations of the students’ unique skill sets and the array of animals that we collected generated a profusion of discovery – applying well-developed techniques to new questions in new species. During this process I personally learned much more than what I could teach to the students, making this course an enriching experience for me as well. The main message of the course we tried to emphasize was the astonishing diversity of biochemical processes, developmental mechanisms, and ecological strategies waiting to be discovered and documented right there in the ocean. This underscores the importance of protecting the endangered biodiversity of our coastlines, but also the value of supporting basic exploratory research outside the handful of classical biological model systems. One of my favorite examples highlighting the importance of exploring non-model systems was brilliantly told by Dan Rokhsar during his genomics lecture to the class. The recent chromosome mapping of non-model species such as the scallop Patinopecten yessoensis and the jellyfish Rhopilema esculentum enabled the discovery of a fundamental feature of animal evolution:  the arrangement of genes on chromosomes (referred to as synteny) is highly conserved and can be traced back to the roots of metazoans (Simakov et al., 2022). The few exceptions to that rule, in which macrosynteny has undergone independent and major reorganization events, are curiously distributed among the metazoan tree: they include the fruit fly Drosophila melanogaster, the nematode Caenorhabditis elegans, and the entire vertebrate clade.

Acknowledgements: A course like this simply cannot run without the support of a team of deeply invested staff and instructors. We want to give a special “thank you!,” to the staff at Hopkins, and to all of our guest instructors – Dan Rokhsar, David Booth, Flora Rutaganira, Christina Zakas, Bo Wang, Brady Weissbourd, Ryan York, Wyatt Patry, Deidre Lyons, Jessica Goodheart, Dominique Bergmann – for making this year’s course a success. We also thank the departments of Biology, Developmental Biology, and BioEngineering, at Stanford for financial support, and Molecular Instruments and Luxendo for generously providing equipment and reagents for the course.

Confocal micrograph of a market squid, Loligo opalescens, stained with DAPI (grey) and HCR probes for sodium channel (yellow) and gluatamate receptor (magenta). (Photo credit: Nat Clarke)
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June in preprints

Posted by , on 8 July 2022

Welcome to our monthly trawl for developmental biology (and related) preprints.

The preprints this month are hosted on bioRxiv, arXiv and preprints.org – use these links to get to the section you want.

Developmental biology

Cell Biology

Modelling

Reviews

Tools & Resources

Research practice & education

Developmental biology

| Patterning & signalling

Drosophila wing discs from Prasad, et al.

Bilateral JNK activation is a hallmark of interface contractility and promotes elimination of aberrant cells
Deepti Prasad, Katharina Illek, Friedericke Fischer, Kathrin Holstein, Anne-Kathrin Classen

Planar cell polarity: intracellular asymmetry and supracellular gradients of Dachsous
Adrià Chorro, Bhavna Verma, Maylin Homfeldt, Beatríz Ibáñez, Peter A. Lawrence, José Casal

MicroRNA-27a is essential for bone remodeling by modulating p62-mediated osteoclast signaling
Shumin Wang, Eri O Maruyama, John Martinez, Trunee Hsu, Wencheng Wu, Wei Hsu, Takamitsu Maruyama

Hox11-expressing interstitial cells contribute to adult skeletal muscle at homeostasis
Corey G.K. Flynn, Qingyuan Guo, Paul R. Van Ginkel, Steven M. Hrycaj, Aubrey E. McDermott, Angelo Madruga, Deneen M. Wellik

Suppression of YAP Safeguards Human Naïve Pluripotency
Anish Dattani, Tao Huang, Austin Smith, Ge Guo

The homeodomain transcription factor Ventx2 regulates respiratory progenitor cell number and differentiation timing during Xenopus lung development
Scott A. Rankin, Aaron M. Zorn

Analysis of SMAD1/5 target genes in a sea anemone reveals ZSWIM4-6 as a novel BMP signaling modulator
Paul Knabl, Alexandra Schauer, Autumn Penecilla Pomreinke, Bob Zimmermann, Katherine W. Rogers, Patrick Müller, Grigory Genikhovich

Shoc2 controls ERK1/2-driven neural crest development by balancing components of the extracellular matrix
Rebecca G. Norcross, Lina Abdelmoti, Eric C. Rouchka, Kalina Andreeva, Olivia Tussey, Daileen Landestoy, Emilia Galperin

Interstitial Notch signaling regulates nephron development via the Gata3-Renin axis in the mouse kidney
Eunah Chung, Mike Adam, Andrew S. Potter, Sara M. Marshall, S. Steven Potter, Joo-Seop Park

Thyroid and foregut tissue from 28 hpf zebrafish embryos from Haerlingen, et al.

Mesodermal FGF and BMP govern the sequential stages of zebrafish thyroid specification
Benoit Haerlingen, Robert Opitz, Isabelle Vandernoot, Angelo Molinaro, Meghna Shankar, Pierre Gillotay, Achim Trubiroha, Sabine Costagliola

Hippo pathway-mediated YAP1/TAZ inhibition is essential for proper pancreatic endocrine specification and differentiation
Yifan Wu, Kunhua Qin, Kevin Lopez, Jun Liu, Michael Nipper, Janice J Deng, Xue Yin, Logan Ramjit, Zhengqing Ye, Pei Wang

A Chemical-mechanical Coupled Model Predicts Roles of Spatial Distribution of Morphogen in Maintaining Tissue Growth
Alireza Ramezani, Samuel Britton, Roya Zandi, Mark Alber, Ali Netmatbakhsh, Weitao Chen

Multifunctional role of GPCR signaling in epithelial tube formation
Vishakha Vishwakarma, Thao Phuong Le, SeYeon Chung

Sex-Specific Role of Myostatin Signaling in Neonatal Muscle Growth, Denervation Atrophy, and Neuromuscular Contractures
Marianne E Emmert, Parul Aggarwal, Kritton Shay-Winkler, Se-Jin Lee, Qingnian Goh, Roger Cornwall

Retinoic acid control of pax8 during renal specification of Xenopus pronephros involves hox and meis3
Jennifer Durant-Vesga, Nanoka Suzuki, Haruki Ochi, Ronan Le Bouffant, Alexis Eschstruth, Hajime Ogino, Muriel Umbhauer, Jean-François Riou

Spatio-temporal Control of ERK Pulse Frequency Coordinates Fate Decisions during Mammary Acinar Morphogenesis
Pascal Ender, Paolo Armando Gagliardi, Maciej Dobrzyński, Agne Frismantiene, Coralie Dessauges, Thomas Höhener, Marc-Antoine Jacques, Andrew R. Cohen, Olivier Pertz

A novel Wnt pathway orients Par complex-dependent cell polarity
Shigeki Yoshiura, Fumio Matsuzaki

| Morphogenesis & mechanics

Direct Force Measurement and Loading on Developing Tissues in Intact Avian Embryos
Chon U Chan, Fengzhu Xiong, Arthur Michaut, Olivier Pourquie, L. Mahadevan

Temporally and regionally distinct morphogenetic processes govern zebrafish tail fin blood vessel network expansion
Elvin V. Leonard, Sana Safatul Hasan, Arndt F. Siekmann

3E-uterus (ex vivo engineered uterine environment with 3D geometrically patterned hydrogels) timelapse from Bondarenko, et al.

Coordination Between Embryo Growth and Trophoblast Migration Upon Implantation Delineates Mouse Embryogenesis
V. Bondarenko, M. Nikolaev, D. Kromm, R. Belousov, A. Wolny, S. Rezakhani, J. Hugger, V. Uhlmann, L. Hufnagel, A. Kreshuk, J. Ellenberg, A. Erzberger, M. Lutolf, T. Hiiragi

In vivo imaging and regression analysis reveal cell-non-autonomous functions of Shroom3 during neural tube closure
Austin T. Baldwin, Juliana H. Kim, John B. Wallingford

Regulation of Aortic Morphogenesis and VE-Cadherin Dynamics by VEGF
Julian Jadon, Ronit Yelin, Alaa A. Arraf, Manar Abboud Asleh, Mira Zaher, Thomas M. Schultheiss

Actomyosin-mediated cellular tension promotes Yap nuclear translocation and myocardial proliferation through α5 integrin signaling
Xiaofei Li, Callie McLain, Michael S. Samuel, Michael F. Olson, Glenn L. Radice

PCP and Septins govern the polarized organization and mechanics of the actin cytoskeleton during convergent extension
Caitlin C Devitt, Shinuo Weng, Vidal D Bejar-Padilla, José Alvarado, John B Wallingford

Matrix fibroblast function during alveolarization is dependent on GATA6
Mereena George Ushakumary, Jenna Green, Matthew Richard Riccetti, Cheng-Lun Na, Divya Mohanraj, Minzhe Guo, Anne-Karina Theresia Perl

Novel insights into the fundamentals of palatal shelf elevation dynamics in normal mouse embryos
Jeremy P. Goering, Michael Moedritzer, Marta Stetsiv, Dona Greta Isai, Brittany M. Hufft-Martinez, Zaid Umar, Madison K. Rickabaugh, Paul Keselman, Munish Chauhan, William M. Brooks, Kenneth J. Fischer, Andras Czirok, Irfan Saadi

ERK-mediated Curvature Feedback Regulates Branching Morphogenesis in Lung Epithelial Tissue
Tsuyoshi Hirashima, Michiyuki Matsuda

Integration of mouse ovary morphogenesis with developmental dynamics of the oviduct, ovarian ligaments, and rete ovarii
Jennifer McKey, Dilara N. Anbarci, Corey Bunce, Alejandra E. Ontiveros, Richard R. Behringer, Blanche Capel

Activity-driven extracellular volume expansion drives vertebrate axis elongation
Arthur Michaut, Alessandro Mongera, Anupam Gupta, Mattia Serra, Pietro Rigoni, Jong Gwan Lee, Felipe Duarte, Adam R. Hall, L. Mahadevan, Karine Guevorkian, Olivier Pourquié

MLT-11 expression in C.elegans from Ragle, et al.

The conserved, secreted protease inhibitor MLT-11 is necessary for C. elegans molting and embryogenesis
James Matthew Ragle, Max T. Levenson, John C. Clancy, An A. Vo, Vivian Pham, Jordan D. Ward

Mechanical loading is required for initiation of extracellular matrix deposition at the developing murine myotendinous junction
Sarah N. Lipp, Kathryn R. Jacobson, Haley A. Colling, Tyler G. Tuttle, Dalton T. Miles, Kaitlin P. McCreery, Sarah Calve

Mechanical Loading due to Muscle Movement Regulates Establishment of the Collagen Network in the Developing Murine Skeleton
S. Ahmed, A.V. Rogers, N. C. Nowlan

Mechanoregulatory role of TRPV4 in prenatal skeletal development
Nidal Khatib, James Monsen, Saima Ahmed, Yuming Huang, David A. Hoey, Niamh C. Nowlan

Dynamic interplay of protrusive microtubule and contractile actomyosin forces drives tissue extension
Amrita Singh, Sameedha Thale, Tobias Leibner, Andrea Ricker, Harald Nüsse, Jürgen Klingauf, Mario Ohlberger, Maja Matis

Pyramidal neuron morphogenesis requires a septin network that stabilizes filopodia and suppresses lamellipodia during neurite initiation
Megan R. Radler, Xiaonan Liu, Megan Peng, Brenna Doyle, Kazuhito Toyo-Oka, Elias T. Spiliotis

Mechanotransductive feedback control of endothelial cell motility and vascular morphogenesis
Devon E. Mason, Megan Goeckel, Sebastián L. Vega, Pei-Hsun Wu, Dymonn Johnson, Su-Jin Heo, Denis Wirtz, Jason A. Burdick, Levi Wood, Brian Y. Chow, Amber N. Stratman, Joel D. Boerckel

Dishevelled controls bulk cadherin dynamics and the stability of individual cadherin clusters during convergent extension
Robert J. Huebner, John B. Wallingford

| Genes & genomes

The highly expressed ERV1 forms virus-like particles for regulating early embryonic development
Wenjing Li, Shujuan Liu, Jianglin Zhao, Ruizhi Deng, Yayi Liu, Huijia Li, Hongwei Ma, Yanzhi Chen, Jingcheng Zhang, Yongsheng Wang, Jianmin Su, Fusheng Quan, Xu liu, Yan Luo, Yong Zhang, Jun Liu

Regeneration and Developmental Enhancers Are Differentially Compatible with Minimal Promoters
Ian J. Begeman, Benjamin Emery, Andrew Kurth, Junsu Kang

Multi-omics analysis demonstrates a critical role for GLP methyltransferase in transcriptional repression during oogenesis
Hannah Demond, Courtney W. Hanna, Juan Castillo-Fernandez, Fátima Santos, Evangelia K. Papachristou, Anne Segonds-Pichon, Kamal Kishore, Clive S. D’Santos, Gavin Kelsey

 Hierarchical clustering analysis of differentially expressed genes from Xu, et al.

Mcm2 promotes stem cell differentiation via its ability to bind H3-H4
Xiaowei Xu, Xu Hua, Kyle Brown, Xiaojun Ren, Zhiguo Zhang

The Prmt5-Vasa module is essential for dichotomous spermatogenesis in Bombyx mori
Xu Yang, Dongbin Chen, Shirui Zheng, Meiyan Yi, Yongjian Liu, Yongping Huang

Conservation at the uterine-placental interface
Regan L. Scott, Ha T. H. Vu, Ashish Jain, Khursheed Iqbal, Geetu Tuteja, Michael J. Soares

Hnf1b renal expression directed by a distal enhancer responsive to Pax8
L. Goea, I. Buisson, V. Bello, A. Eschstruth, M. Paces-Fessy, R. Le Bouffant, A. Chesneau, S. Cereghini, J.F. Riou, M. Umbhauer

The Grainyhead/LSF transcription factor GRH-1 is rhythmically required for molting
Milou W.M. Meeuse, Yannick P. Hauser, Smita Nahar, Kathrin Braun, Helge Großhans

Decoding gene regulation in the mouse embryo using single-cell multi-omics
Ricard Argelaguet, Tim Lohoff, Jingyu Gavin Li, Asif Nakhuda, Deborah Drage, Felix Krueger, Lars Velten, Stephen J. Clark, Wolf Reik

Distinct airway progenitor cells drive epithelial heterogeneity in the developing human lung
Ansley S. Conchola, Tristan Frum, Zhiwei Xiao, Peggy P. Hsu, Renee F.C. Hein, Alyssa Miller, Yu-Hwai Tsai, Angeline Wu, Kamika Kaur, Emily M. Holloway, Abhinav Anand, Preetish K. L. Murthy, Ian Glass, Purushothama R. Tata, Jason R. Spence

Single-Cell RNA-seq Uncovers Dynamic Processes Orchestrated by RNA-Binding Protein DDX43 in Chromatin Remodeling during Spermiogenesis
Huanhuan Tan, Weixu Wang, Chongjin Zhou, Yanfeng Wang, Shu Zhang, Pinglan Yang, Rui Guo, Wei Chen, Lan Ye, Yiqiang Cui, Ting Ni, Ke Zheng

Neural plate progenitors give rise to both anterior and posterior pituitary cells
Qiyu Chen, Dena Leshkowitz, Hanjie Li, Andreas van Impel, Stefan Schulte-Merker, Ido Amit, Gil Levkowitz

CRISPR/Cas9 and FLP-FRT mediated multi-modular engineering of the cis-regulatory landscape of the bithorax complex of Drosophila melanogaster
Nikhil Hajirnis, Shubhanshu Pandey, Rakesh K Mishra

Stage 3 Parasteatoda tepidariorum embryos from Iwasaki-Yokozawa, et al.

Lineage-specific, fast-evolving GATA-like gene regulates zygotic gene activation to promote endoderm specification and pattern formation in the Theridiidae spider
Sawa Iwasaki-Yokozawa, Ryota Nanjo, Yasuko Akiyama-Oda, Hiroki Oda

Mettl14-mediated m6A modification ensures the cell cycle progression of late-born retinal progenitor cells
Liang Li, Yue Sun, Alexander E. Davis, Man-Ru Wu, Cheng-Hui Lin, Sui Wang

Metabolic control of histone acetylation for precise and timely regulation of minor ZGA in early mammalian embryos
Jingyu Li, Jiaming Zhang, Weibo Hou, Xu Yang, Xiaoyu Liu, Yan Zhang, Meiling Gao, Ming Zong, Zhixiong Dong, Zhonghua Liu, Jingling Shen, Weitao Cong, Chunming Ding, Shaorong Gao, Guoning Huang, Qingran Kong

Oct1 recruits the histone lysine demethylase Utx to promote lineage specification
Jelena Perovanovic, Yifan Wu, Hosiana Abewe, Zuolian Shen, Erik Hughes, Jason Gertz, Mahesh B. Chandrasekharan, Dean Tantin

Inducible degradation of the Drosophila Mediator subunit Med19 reveals its role in regulating developmental but not constitutively-expressed genes
Denis Jullien, Emmanuelle Guillou, Sandra Bernat-Fabre, Adeline Payet, Henri-Marc G. Bourbon, Muriel Boube

Developmental cell fate choice employs two distinct cis regulatory strategies
M. Joaquina Delás, Christos M Kalaitzis, Tamara Fawzi, Madeleine Demuth, Isabel Zhang, Hannah T Stuart, Elena Costantini, Kenzo Ivanovitch, Elly M Tanaka, James Briscoe

Human ERG Oncoprotein Represses Chip/LDB1 LIM-Domain Binding Gene in Drosophila
Mahima Bharti, Anjali Bajpai, Umanshi Rautela, Nishat Manzar, Bushra Ateeq, Pradip Sinha

Developing and adult reef fish show rapid, reversible light-induced plasticity in their visual system
Lily G. Fogg, Fabio Cortesi, Camille Gache, David Lecchini, N. Justin Marshall, Fanny de Busserolles

An epigenetic barrier sets the timing of human neuronal maturation
Gabriele Ciceri, Hyunwoo Cho, Meghana Kshirsagar, Arianna Baggiolini, Kelly A Aromolaran, Ryan M Walsh, Peter A Goldstein, Richard P. Koche, Christina S Leslie, Lorenz Studer

Enhancer architecture and chromatin accessibility constrain phenotypic space during development
Rafael Galupa, Gilberto Alvarez-Canales, Noa Ottilie Borst, Timothy Fuqua, Lautaro Gandara, Natalia Misunou, Kerstin Richter, Mariana R. P. Alves, Esther Karumbi, Melinda Liu Perkins, Tin Kocijan, Christine A. Rushlow, Justin Crocker

Cleavage of histone H2A during embryonic stem cell differentiation destabilizes nucleosomes to counteract gene activation
Mariel Coradin, Joseph Cesare, Yemin Lan, Zhexin Zhu, Peder J. Lund, Simone Sidoli, Yekaterina Perez, Congcong Lu, Elizabeth G. Porter, Charles W. M. Robert, Benjamin A. Garcia

SLAMseq resolves the kinetics of maternal and zygotic gene expression in early zebrafish embryogenesis
Pooja Bhat, Luis E. Cabrera-Quio, Veronika A. Herzog, Nina Fasching, Andrea Pauli, Stefan L. Ameres

Spatiotemporal dynamics of zygotic genome activation in basal chordates revealed by interspecific hybrids
Jiankai Wei, Wei Zhang, Liang Leng, An Jiang, Yuting Li, Yonghang Ge, Quanyong Zhang, Liya Zhang, Haiyan Yu, Kai Chen, Bo Dong

Foxn1 overexpression promotes thymic epithelial progenitor cell proliferation and mTEC maintenance, but does not prevent thymic involution
Jie Li, Lucas P. Wachsmuth, Shiyun Xiao, Brian G. Condie, Nancy R. Manley

Mouse retinal explants from Fries, et al.

Pou3f1 orchestrates a gene regulatory network controlling contralateral retinogeniculate projections
Michel Fries, Thomas W. Brown, Christine Jolicoeur, Camille Boudreau-Pinsonneault, Awais Javed, Pénélope Abram, Michel Cayouette

NFATc1 negatively determines chondrocyte differentiation in articular cartilage progenitors
Fan Zhang, Ying Zhao, Manqi Wang, Bin Zhou, Bin Zhou, Xianpeng Ge

Multi-omics analysis reveals a crucial role for Retinoic Acid in promoting epigenetic and transcriptional competence of an in vitro model of human Pharyngeal Endoderm
Andrea Cipriano, Alessio Colantoni, Danielle Gomes, Mahdi Moqri, Alexander Parker, Matthew Caldwell, Francesca Briganti, Jonathan Fiorentino, Maria Grazia Roncarolo, Antonio Baldini, Katja G Weinacht, Gian Gaetano Tartaglia, Vittorio Sebastiano

An environment to genome control loop using RNA interference processing of secreted tRNAs may regulates the C. elegans chemo-sensory behavior
Jean-Jacques Remy

Recapitulation of the embryonic transcriptional program in insect pupae
Alexandra M Ozerova, Mikhail S. Gelfand

Dopamine pathway characterization during the reproductive mode switch in the pea aphid
Gaël Le Trionnaire, Sylvie Hudaverdian, Gautier Richard, Sylvie Tanguy, Florence Gleonnec, Nathalie Prunier-Leterme, Jean-Pierre Gauthier, Denis Tagu

Cardiac neural crest lineage diversity and underlying gene regulatory networks revealed by multimodal analysis
Akiyasu Iwase, Yasunobu Uchijima, Daiki Seya, Mayuko Kida, Hiroki Higashiyama, Kazuhiro Matsui, Akashi Taguchi, Shogo Yamamoto, Shiro Fukuda, Seitaro Nomura, Takahide Kohro, Chisa Shukunami, Haruhiko Akiyama, Masahide Seki, Yutaka Suzuki, Youichiro Wada, Hiroyuki Aburatani, Yukiko Kurihara, Sachiko Miyagawa-Tomita, Hiroki Kurihara

Evidence for the digital programming of cellular differentiation: characterization of binary switches in lineage-determining transcription factors
Hongchuan Li, Md Ahasanur Rahman, Paul W Wright, Jennie Cao, Shashikala Ratnayake, Qingrong Chen, Chunhua Yan, Daoud Meerzaman, Aharon G Freud, Stephen K Anderson

Human cerebral organoids from Saha, et al.

DHFR metabolic activity controls neurogenic transitions in the developing Human and mouse neocortex
Sulov Saha, Thomas Jungas, David Ohayon, Christophe Audouard, Tao Ye, Mohamad-Ali Fawal, Alice Davy

Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics
Coralie Zangarelli, Olivier Arnaiz, Mickaël Bourge, Kevin Gorrichon, Yan Jaszczyszyn, Nathalie Mathy, Loïc Escoriza, Mireille Bétermier, Vinciane Régnier

Postnatal developmental trajectory of sex-biased gene expression in the mouse pituitary gland
Huayun Hou, Cadia Chan, Kyoko E. Yuki, Dustin Sokolowski, Anna Roy, Rihao Qu, Liis Uusküla-Reimand, Mariela Faykoo-Martinez, Matt Hudson, Christina Corre, Anna Goldenberg, Zhaolei Zhang, Mark R. Palmert, Michael D. Wilson

A role for Flipons and miRNAs in Promoter Specification during Development
Alan Herbert, Fedor Pavlov, Dmitrii Konovalov, Maria Poptsova

Transcriptome analysis of human preimplantation embryo reveals expressed waves associated with blastulation failure based on embryonic grade and age
Ping Yuan, Ying Liu, Haijing Zhao, Guangwei Ma, Lingyan Zheng, Qingxue Zhang, Hui Chen, Wenjun Wang, Yabin Guo

Resetting of H3K4me2 during mammalian parental-to-zygote transition
Chong Wang, Yong Shi, Jia Guo, Kaiyue Hu, Yaqian Wang, Yang Li, Jiawei Xu

| Stem cells, regeneration & disease modelling

The centrosomal protein 83 (CEP83) regulates human pluripotent stem cell differentiation towards the kidney lineage
Fatma Mansour, Christian Hinze, Narasimha Swamy Telugu, Jelena Kresoja, Iman B. Shaheed, Christian Mosimann, Sebastian Diecke, Kai M. Schmidt-Ott

The native cell differentiation program aberrantly recapitulated in yki3S/A-induced intestinal hyperplasia drives invasiveness and cachexia-like wasting phenotypes
Inez K.A. Pranoto, Jiae Lee, Young V. Kwon

Valproic Acid Affects Neuronal Specification and Differentiation During Early Optic Tectum Development of Zebrafish
Sierra C. Dixon, Bailey J. Calder, Shane M. Lilya, Brandon M. Davies, Annalie Martin, Maggie Peterson, Jason M. Hansen, Arminda Suli

Transit-amplifying progenitor with maturation-dependent behavior contributes to epidermal renewal
Sangeeta Ghuwalewala, Kevin Jiang, Sara Ragi, David Shalloway, Tudorita Tumbar

Axolotl limbs from Bay, et al.

Downregulation of Yap1 During Limb Regeneration Results in Defective Bone Formation in Axolotl
Sadık Bay, Gürkan Öztürk, Nesrin Emekli, Turan Demircan

KMT2D-NOTCH Mediates Coronary Abnormalities in Hypoplastic Left Heart Syndrome
Zhiyun Yu, Xin Zhou, Ziyi Liu, Victor Pastrana-Gomez, Yu Liu, Minzhe Guo, Lei Tian, Timothy J. Nelson, Nian Wang, Seema Mital, David Chitayat, Joseph C. Wu, Marlene Rabinovitch, Sean M. Wu, Michael P. Snyder, Yifei Miao, Mingxia Gu

LSD1-mediated demethylation of β-catenin regulates muscle stem cell self-renewal potential
Sandrine Mouradian, Delia Cicciarello, Nicolas Lacoste, Francesca Berretta, Laurent Schaeffer, Isabella Scionti

New functional vessels form after spinal cord injury in zebrafish
Ana Ribeiro, Mariana Rebocho da Costa, Carmen de Sena-Tomás, Elsa Charas Rodrigues, Raquel Quitéria, Tiago Maçarico, Susana Constantino Rosa Santos, Leonor Saúde

Single-cell transcriptomics identifies regulation of invasive behavior in Drosophila follicle cells with polarity loss
Deeptiman Chatterjee, Xian-Feng Wang, Allison Jevitt, Caique Almeida Machado Costa, Yi- Chun Huang, Wu-Min Deng

Regulated extracellular matrix trafficking shapes cell growth during cartilage morphogenesis
Daniel S. Levic, Gokhan Unlu, David B. Melville, Ela W. Knapik

Clonal inactivation of telomerase promotes accelerated stem cell differentiation
Kazuteru Hasegawa, Yang Zhao, Alina Garbuzov, M. Ryan Corces, Lu Chen, Peggie Cheung, Yuning Wei, Howard Y. Chang, Steven E. Artandi

Dkk1 inhibition normalizes limb phenotypes in a mouse model of Fzd2 associated omodysplasia Robinow syndromes
Ryan P. Liegel, Megan N. Michalski, Sanika Vaidya, Elizabeth Bittermann, Erin Finnerty, Chelsea A. Menke, Cassandra R. Diegel, Zhendong A. Zhong, Bart O. Williams, Rolf W. Stottmann

Chromosome silencing in vitro reveals trisomy 21 causes cell-autonomous deficits in angiogenesis and early dysregulation in Notch signaling
Jennifer E. Moon, Jeanne B. Lawrence

Epo-IGF1R crosstalk expands stress-specific progenitors in regenerative erythropoiesis and myeloproliferative neoplasm
Hsi-Hsien Hsieh, Huiyu Yao, Yue Ma, Yuannyu Zhang, Xue Xiao, Helen Stephens, Stephen S. Chung, Lin Xu, Jian Xu, Raajit K. Rampal, Lily Jun-shen Huang

Craniofacial dysmorphology in Down Syndrome is caused by increased dosage of Dyrk1a and at least three other genes
Yushi Redhead, Dorota Gibbins, Eva Lana-Elola, Sheona Watson-Scales, Lisa Dobson, Matthias Krause, Karen J. Liu, Elizabeth M. C. Fisher, Jeremy B.A. Green, Victor L.J. Tybulewicz

Zebrafish larvae from Allers, et al.

Loss of Shp1 impairs myeloid cell function and causes lethal inflammation in zebrafish larvae
Maaike Allers, Petra A. Bakker, Herman P. Spaink, Jeroen den Hertog

COP9 signalosome component CSN-5 stabilizes PUF proteins FBF-1 and FBF-2 in C. elegans germline stem cells
Emily Osterli, Mary Ellenbecker, Xiaobo Wang, Mikaya Terzo, Ketch Jacobson, Ekaterina Voronina

Foxm1 drives cardiomyocyte proliferation in adult zebrafish after cardiac injury
Daniel A. Zuppo, Maria A. Missinato, Lucas Santana-Santos, Guang Li, Panayiotis V. Benos, Michael Tsang

Delineation and birth of a layered intestinal stem cell niche
Neil McCarthy, Guodong Tie, Shariq Madha, Judith Kraiczy, Adrianna Maglieri, Ramesh A. Shivdasani

Modular, Cascade-like Transcriptional Program of Regeneration in Stentor
Pranidhi Sood, Athena Lin, Connie Yan, Rebecca McGillivary, Ulises Diaz, Tatyana Makushok, Wallace F. Marshall

Modeling of Aberrant Epithelial Reprogramming in Idiopathic Pulmonary Fibrosis using Human Induced Pluripotent Stem Cell-derived Alveolar Organoids
Victoria Ptasinski, Susan J. Monkley, Karolina Öst, Markus Tammia, Catherine Overed-Sayer, Petra Hazon, Darcy E. Wagner, Lynne A. Murray

Connexin43 Overexpression Promotes Bone Regeneration by Osteogenesis and Angiogenesis in Rat Glucocorticoid-Induced Osteonecrosis of the Femoral Head
Xin Zhao, Changjun Chen, Yue Luo, Donghai Li, Qiuru Wang, Yuying Fang, Pengde Kang

Skeletal muscle lineage is dispensable for appendage regeneration in axolotl
Yan Hu, Xiangyu Pan, Yu Shi, Yuanhui Qiu, Liqun Wang, Prayag Murawala, Yanmei Liu, Wanjin Xing, Elly M Tanaka, Ji-Feng Fei

A single cell spatial temporal atlas of skeletal muscle reveals cellular neighborhoods that orchestrate regeneration and become disrupted in aging
Yu Xin Wang, Colin A. Holbrook, James N. Hamilton, Jasmin Garoussian, Mohsen Afshar, Shiqi Su, Christian M. Schürch, Michael Y. Lee, Yury Goltsev, Anshul Kundaje, Garry P. Nolan, Helen M. Blau

Peroxiredoxin 5 regulates osteogenic differentiation via interaction with hnRNPK during bone regeneration
Eunjin Cho, Xiangguo Che, Mary Jasmin Ang, Seongmin Cheon, Jinkyung Lee, Kwang Soo Kim, Chang Hoon Lee, Sang-Yeop Lee, Hee-Young Yang, Changjong Moon, Chungoo Park, Je-Yong Choi, Tae-Hoon Lee

Integrative single-cell analysis of cardiogenesis identifies developmental trajectories and non-coding mutations in congenital heart disease
Mohamed Ameen, Laksshman Sundaram, Abhimanyu Banerjee, Mengcheng Shen, Soumya Kundu, Surag Nair, Anna Shcherbina, Mingxia Gu, Kitchener D. Wilson, Avyay Varadarajan, Nirmal Vadgama, Akshay Balsubramani, Joseph C. Wu, Jesse Engreitz, Kyle Farh, Ioannis Karakikes, Kevin C Wang, Thomas Quertermous, William Greenleaf, Anshul Kundaje

| Plant development

bHLH heterodimer complex variations shape meristems in Arabidopsis thaliana by affecting target gene specificity
Eliana Mor, Markéta Pernisová, Max Minne, Guillaume Cerutti, Dagmar Ripper, Jonah Nolf, Jennifer Andres, Laura Ragni, Matias D. Zurbriggen, Bert De Rybel, Teva Vernoux

Temporal sequence of auxin flux in developing roots from Teixeira Santos, et al.

Reverse engineering lateral root stable prebranch site formation; Complementary roles for auxin and auxin signalling
Joana Teixeira Santos, Thea van den Berg, Kirsten ten Tusscher

A quantitative gibberellin signalling biosensor reveals a role for gibberellins in internode specification at the shoot apical meristem
Bihai Shi, Amelia Felipo-Benavent, Guillaume Cerutti, Carlos Galvan-Ampudia, Lucas Jilli, Geraldine Brunoud, Jérome Mutterer, Elody Vallet, Lali Sakvarelidze-Achard, Jean-Michel Davière, Alejandro Navarro-Galiano, Ankit Walia, Shani Lazary, Jonathan Legrand, Roy Weinstain, Alexander M. Jones, Salomé Prat, Patrick Achard, Teva Vernoux

Lysine 27 of histone H3.3 is a fine modulator of developmental gene expression and stands as an epigenetic checkpoint for lignin biosynthesis in Arabidopsis
Kateryna Fal, Denisa Tomkova, Marie Le Masson, Adi Faigenboim, Emeline Pano, Nickolay Ishkhneli, Netta-Lee Moyal, Claire Villette, Marie-Edith Chabouté, Alexandre Berr, Leor Eshed Williams, Cristel C. Carles

Extracurricular roles and divergent regulation of FAMA in Brachypodium and Arabidopsis stomatal development
Katelyn H. McKown, M. Ximena Anleu Gil, Andrea Mair, Shouling Xu, Dominique C. Bergmann

3D (x-y-t) Raman imaging of tomato fruit cuticle: microchemistry during development
Ana González Moreno, Eva Domínguez, Konrad Mayer, Nannan Xiao, Peter Bock, Antonio Heredia, Notburga Gierlinger

Auxin-dependent acceleration of cell division rates regulates root growth at elevated temperature
Haiyue Ai, Julia Bellstaedt, Kai Steffen Bartusch, Lennart Eschen-Lippold, Steve Babben, Gerd Ulrich Balcke, Alain Tissier, Bettina Hause, Tonni Grube Andersen, Carolin Delker, Marcel Quint

Packing limits and developmental integration are not sufficient to explain stomatal anatomical evolution in flowering plants
Christopher D. Muir, Miquel Àngel Conesa, Jeroni Galmés, Varsha S. Pathare, Patricia Rivera, Rosana López Rodríguez, Teresa Terrazas, Dongliang Xiong

Ralstonia solanacearum alters root developmental programs in auxin-dependent and independent manners
Hao Xue, Gang Yu, Lu Zhang, Meng Li, Rosa Lozano-Durán, Alberto P. Macho

Cell division controls final fruit size in three apple (Malus x domestica) cultivars
Siti Khadijah A. Karim, Andrew C. Allan , Robert J. Schaffer , Karine M. David

| Evo-devo

Metamorphosis of memory circuits in Drosophila reveal a strategy for evolving a larval brain
James W. Truman, Jacquelyn Price, Rosa L. Miyares, Tzumin Lee

Phylogenetic tree based on the vestigial gene in Drosophila from Farfán-Pira, et al.

A cis-regulatory sequence of the wing selector gene, vestigial, drives the evolution of scaling relationships in Drosophila species
Keity J. Farfán-Pira, Teresa I. Martínez-Cuevas, Timothy A. Evans, Marcos Nahmad

Cell Biology

Repression of lysosomal transcription factors Tfeb and Tfe3 is essential for the migration and function of microglia
Harini Iyer, Kimberle Shen, Ana M. Meireles, William S. Talbot

TOM-1/Tomosyn acts with the UNC-6/Netrin receptor UNC-5 to inhibit growth cone protrusion in Caenorhabditis elegans
Snehal S. Mahadik, Erik A. Lundquist

CITED2 IS A CONSERVED REGULATOR OF DEEP HEMOCHORIAL PLACENTATION
Marija Kuna, Pramod Dhakal, Khursheed Iqbal, Esteban M. Dominguez, Lindsey N. Kent, Masanaga Muto, Ayelen Moreno-Irusta, Keisuke Kozai, Kaela M. Varberg, Hiroaki Okae, Takahiro Arima, Henry M. Sucov, Michael J. Soares

AKT1-FOXO4 AXIS REGULATES HEMOCHORIAL PLACENTATION
Keisuke Kozai, Ayelen Moreno-Irusta, Khursheed Iqbal, Mae-Lan Winchester, Regan L. Scott, Mikaela E. Simon, Masanaga Muto, Marc R. Parrish, Michael J. Soares

Live imaging of delamination in Drosophila shows epithelial cell motility and invasiveness are independently regulated
Mikiko Inaki, Kenji Matsuno

Human sperm TMEM95 binds eggs and facilitates membrane fusion
Shaogeng Tang, Yonggang Lu, Will M. Skinner, Mrinmoy Sanyal, Polina V. Lishko, Masahito Ikawa, Peter S. Kim

The DNA Damage response and cell competition are p53- and Xrp1-dependent processes that suppress hyperplastic aneuploidy
Chaitali Khan, Nicholas E. Baker

Arachnoid barrier cells in the mouse forebrain from Derk, et al.

‘Formation and function of the meninges arachnoid barrier around the developing brain’
Julia Derk, Christina N. Como, Hannah E. Jones, Luke R. Joyce, Stephanie Bonney, Rebecca O’Rourke, Brad Pawlikowski, Kelly S. Doran, Julie A. Siegenthaler

E-cadherin mediated Apical Membrane Initiation Site localisation
Xuan Liang, Antonia Weberling, Chun Yuan Hii, Magdalena Zernicka-Goetz, Clare E Buckley

Evolutionarily conserved midbody reorganization precedes ring canal formation during gametogenesis
Kari L. Price, Dyuthi M. Tharakan, Lynn Cooley

WDR47 facilitates ciliogenesis by modulating intraflagellar transport
Chun-Xue Song, Xian-Ting Zeng, Wan-Xin Zeng, Xia-Jing Tong, Qian Li

Spatial regulation of Drosophila ovarian Follicle Stem Cell division rates and cell cycle transitions
David Melamed, Aaron Choi, Amy Reilein, Daniel Kalderon

Banp regulates DNA damage response and chromosome segregation during the cell cycle in zebrafish retina
Swathy Babu, Yuki Takeuchi, Ichiro Masai

Synchronisation of apical constriction and cell cycle progression is a conserved behaviour of pseudostratified neuroepithelia informed by their tissue geometry
Ioakeim Ampartzidis, Christoforos Efstathiou, Francesco Paonessa, Tyler Wilson, Conor J McCann, Nicholas DE Greene, Andrew Copp, Frederick J Livesey, Nicola Elvassore, Giovanni Giuseppe Giobbe, Paolo De Coppi, Eirini Maniou, Gabriel L Galea

Nanog organizes transcription bodies
Ksenia Kuznetsova, Martino Ugolini, Edlyn Wu, Manan Lalit, Haruka Oda, Yuko Sato, Hiroshi Kimura, Florian Jug, Nadine Vastenhouw

Regionally distinct trophoblast regulate barrier function and invasion in the human placenta
Bryan Marsh, Yan Zhou, Mirhan Kapidzic, Susan Fisher, Robert Blelloch

Visuomotor anomalies in achiasmatic mice expressing a transfer-defective Vax1 mutant
Kwang Wook Min, Namsuk Kim, Jae Hoon Lee, Younghoon Sung, Museong Kim, Eun Jung Lee, Jong-Myeong Kim, Jae-Hyun Kim, Jaeyoung Lee, Wonjin Cho, Jee Myung Yang, Nury Kim, Jaehoon Kim, C. Justin Lee, Young-Gyun Park, Seung-Hee Lee, Han-Woong Lee, Jin Woo Kim

Modelling

On How, and Why, and When, We Grow Old
Luca Citti, Jessica Su, James S Michaelson

Modelling embryonic cartilage from Mathias, et al.

Contributions of cell behavior to geometric order in embryonic cartilage
Sonja Mathias, Igor Adameyko, Andreas Hellander, Jochen Kursawe

A lack of distinct cell identities in single-cell measurements: revisiting Waddington’s landscape
Breanne Sparta, Timothy Hamilton, Serena Hughes, Eric J. Deeds

A predicted developmental and evolutionary morphospace for grapevine leaves
Daniel H. Chitwood, Joey Mullins

Effective mechanical potential of cell–cell interaction explains basic structures of three-dimensional morphogenesis
Hiroshi Koyama, Hisashi Okumura, Atsushi M. Ito, Tetsuhisa Otani, Kazuyuki Nakamura, Kagayaki Kato, Toshihiko Fujimori

Study and Modeling of Biological Noise-Filtering Properties of Conserved Gene Regulatory Networks Motifs in Animal Development
Lina M. Ruiz G., Machado R Gloria, Boris A. Rodriguez R

The impact of phenotypic heterogeneity on chemotactic self-organisation
Fiona R Macfarlane, Tommaso Lorenzi, Kevin J Painter

A local continuum model of cell-cell adhesion
Carles Falcó, Ruth E. Baker, José A. Carrillo

Use of the Catastrophe Model to Preliminarily Explore the Principles of Multicellular Organization
Zheming Cao, Weidong Ding , Jun Qiang , Meiyao Wang , Haojun Zhu

Review

Mechanobiology of Collective Cell Migration in 3D Microenvironments
Alex M. Hruska, Haiqian Yang, Susan E. Leggett, Ming Guo, Ian Y. Wong

Tools & Resources

Rapid and robust directed differentiation of mouse epiblast stem cells into definitive endoderm and forebrain organoids
Daniel Medina-Cano, Emily K. Corrigan, Rachel A. Glenn, Mohammed T. Islam, Yuan Lin, Juliet Kim, Hyunwoo Cho, Thomas Vierbuchen

A Development-Inspired Niche for Homeostatic Human Mini-Intestines
Charlie J. Childs, Emily M. Holloway, Caden W. Sweet, Yu-Hwai Tsai, Angeline Wu, Joshua H. Wu, Oscar Pellón Cardenas, Meghan M. Capeling, Madeline Eiken, Rachel Zwick, Brisa Palikuqi, Coralie Trentesaux, Charles Zhang, Ian Glass, Claudia Loebel, Qianhui Yu, J. Gray Camp, Jonathan Z. Sexton, Ophir Klein, Michael P. Verzi, Jason R. Spence

Cdh5-lineage independent origin of dermal lymphatic vessels revealed by temporally restricted lineage tracing
Yan Zhang, Henrik Ortsäter, Ines Martinez-Corral, Taija Mäkinen

An atlas of spider development at single-cell resolution provides new insights into arthropod embryogenesis
Daniel J. Leite, Anna Schönauer, Grace Blakeley, Amber Harper, Helena Garcia-Castro, Luis Baudouin-Gonzalez, Ruixun Wang, Naïra Sarkis, Alexander Günther Nikola, Ventaka Sai Poojitha Koka, Nathan J. Kenny, Natascha Turetzek, Matthias Pechmann, Jordi Solana, Alistair P. McGregor

Axioloids from Yamanaka, et al.

Reconstituting human somitogenesis in vitro
Yoshihiro Yamanaka, Kumiko Yoshioka-Kobayashi, Sofiane Hamidi, Sirajam Munira, Kazunori Sunadome, Yi Zhang, Yuzuru Kurokawa, Ai Mieda, Jamie L. Thompson, Janet Kerwin, Steven Lisgo, Takuya Yamamoto, Naomi Moris, Alfonso Martinez-Arias, Taro Tsujimura, Cantas Alev

Reconstructing human Brown Fat developmental trajectory in vitro
Jyoti Rao, Jerome Chal, Fabio Marchianò, Chih-Hao Wang, Ziad Al Tanoury, Svetlana Gapon, Yannis Djeffal, Alicia Mayeuf-Louchart, Ian Glass, Elizabeth M. Sefton, Bianca Habermann, Gabrielle Kardon, Fiona M. Watt, Yu-Hua Tseng, Olivier Pourquié

Prime editing in chicken fibroblasts and primordial germ cells
Yuji Atsuta, Katsuya Suzuki, Haruna Yaguchi, Daisuke Saito

Determination of expression profiles for Drosophila ovarian Follicle Stem Cells (FSCs) using single-cell RNA sequencing
Zhi Dong, Lan Pang, Zhiguo Liu, Yifeng Sheng, Xavier Thibault, Amy Reilein, Daniel Kalderon, Jianhua Huang

Generation of functional hepatocytes by forward programming with nuclear receptors
Rute A. Tomaz, Ekaterini D. Zacharis, Fabian Bachinger, Annabelle Wurmser, Daniel Yamamoto, Sandra Petrus-Reurer, Carola M. Morell, Dominika Dziedzicka, Brandon T. Wesley, Imbisaat Geti, Charis-Patricia Segeritz, Miguel Cardoso de Brito, Mariya Chhatriwala, Daniel Ortmann, Kourosh Saeb-Parsy, Ludovic Vallier

New Hydra genomes reveal conserved principles of hydrozoan transcriptional regulation
Jack F. Cazet, Stefan Siebert, Hannah Morris Little, Philip Bertemes, Abby S. Primack, Peter Ladurner, Matthias Achrainer, Mark T. Fredriksen, R. Travis Moreland, Sumeeta Singh, Suiyuan Zhang, Tyra G. Wolfsberg, Christine E. Schnitzler, Andreas D. Baxevanis, Oleg Simakov, Bert Hobmayer, Celina E. Juliano

Generation of functional posterior spinal motor neurons from hPSCs-derived human spinal cord neural progenitor cells
Jax H. Xu, Yao Yao, Fenyong Yao, Jiehui Chen, Meishi Li, Xianfa Yang, Sheng Li, Fangru Lu, Ping Hu, Shuijin He, Guangdun Peng, Naihe Jing

Breathing on Chip: Dynamic flow and stretch tune cellular composition and accelerate mucociliary maturation of airway epithelium in vitro
Janna C. Nawroth, Doris Roth, Annemarie van Schadewijk, Abilash Ravi, Tengku Ibrahim Maulana, Christiana N. Senger, Sander van Riet, Dennis K. Ninaber, Amy M. de Waal, Dorothea Kraft, Pieter S. Hiemstra, Amy L Ryan, Anne M. van der Does

Machine learning-based classification of binary dynamic fluorescence signals reveals muscle stem cell fate transitions in response to pro-regenerative niche factors
Matteo Togninalli, Andrew T.V. Ho, Christopher M. Madl, Colin A. Holbrook, Yu Xin Wang, Klas E.G. Magnusson, Anna Kirillova, Andrew Chang, Helen M. Blau

An improved pipeline for reprogramming human induced pluripotent stem cells with TET1
Makoto Motono, Keiko Hiraki-Kamon, Masayoshi Kamon, Hidenori Kiyosawa, Yoichi Kondo, Hidemasa Kato

Normalizing need not be the norm: count-based math for analyzing single-cell data
Samuel H. Church, Jasmine L. Mah, Günter Wagner, Casey W. Dunn

Schematic of STRAINS tool from Zheng, et al.

STRAINS: A Big Data Method for Classifying Cellular Response to Stimuli at the Tissue Scale
Jingyang Zheng, Thomas Wyse Jackson, Lisa A. Fortier, Lawrence J. Bonassar, Michelle L. Delco, Itai Cohen

Following cell type transitions in space and time by combining live-cell tracking and endpoint cell identity in intestinal organoids
Xuan Zheng, Max A. Betjes, Yvonne J. Goos, Guizela Huelsz-Prince, Hans Clevers, Jeroen S. van Zon, Sander J. Tans

DeepNEU©: Introducing aiCRISPRL, a hybrid AI stem cell and organoid simulation platform with broad gene editing capabilities and applications
Sally Esmail, Wayne R Danter

Creation and unification of development and life stage ontologies for animals
Anne Niknejad, Christopher J. Mungall, David Osumi-Sutherland, Marc Robinson-Rechavi, Frederic B. Bastian

MorphoSim: An efficient and scalable phase-field framework for accurately simulating multicellular morphologies
Xiangyu Kuang, Guoye Guan, Chao Tang, Lei Zhang

Mechanical regulators of pressure-driven and crawling-based motility of cell collectives
Michael F. Staddon, Michael P. Murrell, Shiladitya Banerjee

Research practice & education

Making Biomedical Research Software FAIR: Actionable Step-by-step Guidelines with a User-support Tool
Bhavesh Patel, Sanjay Soundarajan, Zicheng Hu

Research Productivity and Training Support for Doctoral Students in the Biological and Biomedical Sciences
Michael D. Schaller

Teaching the Skills and Concepts of Gene Expression Analysis during COVID-19
Louis A. Roberts, Scarlet S. Shell

Retractions and rewards in science: An open question for reviewers and funders
Mariana D Ribeiro, M Kalichman, Sonia MR Vasconcelos

I Am A Scientist: Overcoming implicit bias in STEM through explicit representations of diversity in lectures
Dominic Henri, Kirra Coates, Katharine Hubbard

Ten Simple Rules for Using Public Data for Your Research
Vishal Oza , Jordan Whitlock , Elizabeth Wilk , Angelina Uno-Antonison , Brandon Wilk , Manavalan Gajapathy , Timothy Howton , Austyn Trull , Lara Ianov , Elizabeth Worthey , Brittany Lasseigne

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Categories: Highlights

Launch of Microscopya – an educational game from Beata Science Art

Posted by , on 8 July 2022

8 July 2022 sees the full launch of Microscopya, a video game that takes its player inside the wonderfully complex world of the cell. One of the creators of Microscopya is Beata Mierzwa, who we heard from in one of the earliest SciArt features on the Node. You can read more about the game, its aims and its creators in the press release posted on FocalPlane.

Having tried the game with my family, I can confirm that it appeals to all ages with its beautiful visuals and soundtrack. Whilst younger children might not pick up on all the details (we had a dinner table conversation about a ‘metrotron’ being the powerhouse of the cell!), they loved the microtubule roads and playing the games to win trophies.

You can find out more about Microscopya in the following places:

Twitter: @microscopyagame

Instagram: @microscopyagame

Facebook: @microscopyagame

Website: www.microscopya.com 

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Categories: Outreach, Video

New joint funding call – collaboration between BBSRC and NC3Rs

Posted by , on 7 July 2022

A total of £4M is available through a new collaboration between the BBSRC and NC3Rs focused on supporting alternatives to in vivo models in bioscience research.

The overall aim of this call is to support proposals that:

  • Develop the next generation of non-animal technologies that mimic the physiological environment enabling a whole system/ multi-system approach for discovery and translational science.
  • Enhance the capacity and confidence in non-animal technologies.
  • Establish partnerships between academia, the SME sector, and industry.

Proposals must fall within the BBSRC’s remit to qualify for funding and the research supported should have the realistic possibility of replacing the use of specific in vivo models or animal studies in line with the NC3Rs mission. Projects can run for up to 24 months and should begin by January 2023. Awards are for up to £250k full economic cost and the BBSRC and NC3Rs will fund 80% of the full economic cost. The competition will close on 8 September.

If you are interested in applying for the call, don’t miss the applicant webinar on Thursday 14 July at 10am (BST), where you will have the chance to ask any questions you may have about this new funding opportunity.

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Forceful Impact : EMBO Symposium on Mechanobiology in development and disease

Posted by , on 5 July 2022

After attending several virtual conferences over the past two years, EMBO/EMBL symposium on Mechanobiology in development and disease, held at EMBL Heidelberg between the 15th to 18th of May 2022, was my first in-person meeting since Covid-19 hit. I was excited and equally nervous because my abstract had been selected for an oral presentation at this esteemed platform. This meeting was held in a hybrid format involving participants on-site as well as virtually.

Invited talks were mixed with selected short talks, followed by a “Meeting with speakers” at the end of each session. Also, days 2 and 3 culminated with flash talks by enthusiastic poster presenters, which were refreshing. Some of the flash talk presenters used innovative and hilarious ways to attract the audience to their posters, thus keeping us interested and curious even towards the end of a very busy day. Researchers, enjoying their drinks, congregated around the posters, which were displayed along the distinctive DNA double-helix-shaped staircases of the EMBL building. The virtual attendees also participated with their queries after each presentation via a chairperson for the session. A few highlights from the meeting which captivated me the most were as follows:

Tissue and organ morphogenesis: Day 1 of the meeting started with a wonderful keynote presentation by Ed Munro (University of Chicago, USA) on tissue morphogenesis in an Ascidian, Ciona robusta. He showed mesmerizing movies of neural tube zippering caused by concurrent events of tissue contraction and relaxation at the anterior and posterior end, respectively. Jean-Leon Maitre (Institut Curie, France) showed how hydrostatic pressure fractures the adhesion between cell contacts forming microlumens that coarse with time due to the contractile cell surface. These microlumens eventually fuse to form a single large fluid-filled cavity known as blastocoel in an early-stage mammalian embryo. Amy Shyer (Rockefeller University, USA) discussed the self-organization of tissue patterns in dermis explants which results due to cell-intrinsic contractility and the mechanical properties of the underlying extracellular matrix.

Nuclear mechanotransduction: The meeting revealed multiple exciting discoveries related to nuclear mechanotransduction i.e. how the “brain of the cell” i.e. the nucleus responds to different mechanical environments. The extracellular matrix transduces force to the nucleus through focal adhesions (connecting ECM to the cell surface) and the cytoskeleton (connecting focal adhesions to the nuclear envelop). Pere Roca-Cusachs (Institute for Bioengineering of Catalonia and Universitat de Barcelona, Spain) demonstrated how the stiffness of ECM modulates nuclear shape and pore size thereby affecting the nuclear import/export of a transcriptional regulator known as YAP. Windie Hoefs (Francis Crick Institute) shared her work on the opposing roles of cell-cell adhesion and cell-matrix adhesion in regulating the nuclear localization of YAP when the cells are mechanically stretched. Alice Willart (Institut Curie, France) showed variations in nuclear volume under different magnitudes of mechanical confinement, while Adel Al Jord (Collège de France, France) discussed the role of cytoplasmic forces in organizing nuclear condensates, nucleoli, and mRNA splicing in mammalian and fly oocytes and showed their significance in maintaining organism fertility.

Tissue repair, maintenance, and disease: Genomic instabilities or aberrations can lead to a myriad of deleterious consequences such as cancer and apoptosis. Rong Li (Mechanobiology Institute, Singapore) showed that mitotic errors cause hypo-osmotic stress. Aneuploid cells i.e., cells with an abnormal number of chromosomes, have proteome imbalance which results in the influx of water due to an osmotic pressure difference between the cytoplasm and extracellular environment. Consequently, aneuploid cells become much larger and stiffer than normal cells. While it is well-established that the clearance of apoptotic cells is carried out by immune cells, the mechanism of their removal during early embryogenesis had remain unexplored. Verena Ruprecht’s (Centre for Genomic Regulation, Barcelona, Spain) research revealed an unexpected role of epithelial cells as “phagocytes” that scavenge apoptotic cells during vertebrate embryogenesis, using specialized structures: phagocytic cups and epithelial arms. Tissue homeostasis and development require clearance of dead or unwanted cells as well as repairing of injured tissues. Yalan Mao (University College London, UK) discussed the multiple ways tissues employ to heal wounds, such as tissue fluidity and an altered 3D cell shape. Jochen Guck (Max Planck Institute for the Science of Light, Germany) reported a high-throughput method for screening the mechanical properties of blood cells such as cell size and stiffness, using a microfluidic device, which could be used for the prognosis or the analysis of the phenotypic consequence of diseases such as Covid-19 and cancer.

Besides the intensive scientific talks and discussions, there was a relaxed and calming musical night entertaining all the participants.

I enjoyed all aspects of the meeting, including talks, coffee break discussions, poster sessions, and the food. I would like to thank all the organizers (Alba Diz-Muñoz (EMBL Heidelberg, Germany), Carl-Philipp Heisenberg (Institute of Science And Technology, Austria), Prisca Liberali (Friedrich Miescher Institute for Biomedical Research, Switzerland), Anđela Šarić (University College London, UK), Xavier Trepat (Institute for Bioengineering of Catalonia, Spain) for organizing an excellent meeting covering various aspects of mechanobiology in multiple contexts, from molecular to organism level. Also, I would like to acknowledge Nathalie, the coordination officer, who answered everyone’s queries very patiently before, during, and after the meeting, and made the entire conference run smoothly without any technical glitches.

Nathalie Sneider, Conference coordinator, standing in front of the conference hall

I look forward to more such meetings in the future and would like to recommend this meeting to anyone who would like to pursue their research or is currently working in the field of mechanobiology.

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Workshop my creative science writing with a bunch of fellow scientists and/or writers? Talk about high risk-high reward!

Posted by , on 5 July 2022

Kristin Sherrard
Staff Scientist, University of Chicago, United States.

Charles Darwin, Primo Levi, Rachel Carson, John MacPhee, Ed Yong, Carl Sagan, and Lewis Thomas have all written creatively and eloquently about the natural world and the practice of doing science. In so doing they have changed the way people think about our world, and about scientists.

This past June, The Company of Biologists ran a Workshop called “Creative Science Writing.” The group numbered a dozen mentors (published writers of scientific non-fiction, fiction, and poetry—some full-time writers, many others holding academic positions) and about fifteen mentees (lab techs, recent PhDs, post-docs, professors, staff scientists, freelance writers and journalists, and a playwright, among others).

After we’d found our rooms in the historic Wiston House (I was told mine were in a converted brewery), we gathered in the large conference room with its long, U-shaped table, carrying in name-cards to display in front of us. A microphone sat at each place, making it feel a bit like a small United Nations. We went round the U introducing ourselves by means of an object of special meaning we’d been asked to bring. Those who’d gotten the memo after already being en route to the Workshop admirably evoked such objects by words alone. Already we were telling stories, and it was notable the extent to which people shared quite personal ones right at the outset. This set the tone for the Workshop, which continued in that vein throughout.

Kat Arney, science writer and broadcaster, started off our discussion of Narrative with the observation, “Stuff has to have a beginning, a middle, and an end, and not everyone does that.” We then had a fair bit of discussion of peoples’ practices of outlining work in detail vs. seat-of-the-pants composition, primarily related to non-fiction books. Matthew Cobb, professor of Zoology and writer of non-fiction books, concluded, “No plan survives first engagement with the enemy.” Our resident playwright, Raegan Payne, describing what not to tell, offered the tag, “Come in late and leave early.”

During the Workshop, we broke into smaller groups to discuss pre-distributed published essays and writing submitted by mentees. We also had blocks of time to write or revise. Interspersed with this full schedule were delicious meals prepared by the world-class chefs of Wiston House, tea breaks, and evening drinks and conversation. We were free to wander the extensive and beautiful grounds of Wiston House and held many of our small-group discussions out of doors. The rotating sets of small groups made it easy to get to know one another quickly, with the scale of the meeting making it easy to interact with everyone in the end whilst promoting a very pleasant and collegial atmosphere.

We were lucky to get to talk by zoom to the writer of one of the published pieces, Karen Joy Fowler, and she gave us a lot of insight into her individual writing process. She ended with a cautionary note to the mentees, who were about to hear feedback on their own writing: Never change what you’ve written based on someone else’s critique, unless you fully believe it will get you closer to your intentions.

That being said, the feedback sessions on our submitted pieces were quite supportive as well as offering detailed suggestions and thoughtful critiques. The diversity of writing styles and structures was impressive, and we learned a good deal from one another. One of the most unexpected lessons I took away from the Workshop was that an essential ingredient for a piece that worked is emotional openness and honesty, and a great many pieces displayed that virtue.

Although the majority of attendees had come to work on their non-fiction writing skills, by the end of the Workshop many had become enthusiastic about incorporating more elements from storytelling and fiction into their narratives, or had even decided to try their hands at fiction or poetry.

One of the organizers, Enrico Coen, professor and writer, summed up the Workshop thusly: “My conclusion is that everyone here is slightly barmy.” He added that this will be a great comfort to him as he returns to his peers in the scientific world, knowing that he has all of us as a community. Many of the attendees shared this feeling of having gained a sense of kinship with this group of science writers of all spots and stripes.

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SciArt profile: Bob Goldstein

Posted by , on 5 July 2022

For this month’s SciArt profile, we caught up with Bob Goldstein, a professor at UNC Chapel Hill, who uses various printmaking techniques to produce unique posters advertising scientists’ talks, as well as other art that is shown in galleries and held by permanent collections including New York’s Poster House museum.

Where are you originally from and what do you work on now?

I was born in suburban New York, and trained in Texas, England, and California before starting my job in North Carolina. I run a lab where people use C. elegans to discover fundamental mechanisms in cell and developmental biology, plus we’re developing tardigrades as an emerging model system to study a few different things.

Dan Rokhsar Gig poster

Were you always going to be a scientist?

No – I confess that I didn’t really know what scientists did until late in college, when I took a course that focused on experiments. Before then, I had viewed science cynically as just a giant mountain of facts. It was during the course that I realized that science involved creative people devising clever solutions to answer fascinating questions. I was an instant convert, although it took about two years of grad school before I developed the skills and discipline to make any experiments work. I considered a lot of other careers during those two years.

Gig poster – Elke Ober, MBL Woods Hole

And what about art – have you always enjoyed it?

I’ve long enjoyed going to see art and making things with my hands. Parenting meant making things often – both of my kids are very creative, and when they were young, they loved making things that we did not know how to make. We did that just about every weekend. As they grew up and developed other interests, I kept making things on weekends. It took me a while to call any of it art. Like lots of people who make art, I have constructive urges, and acting on them can feel cathartic to me, much as I expect it feels for people who act on destructive urges.

Photogravure diptych inspired by Rita Levi-Montalcini. Photo credit: Lindsay Metivier

What or who are your most important artistic influences?

When I began screen printing, artists who made gig posters for bands were influences. Now I co-teach an unusual course with an Art professor, Beth Grabowski, who literally wrote the book (or a book) on printmaking, together with Duke University Art professor Bill Fick. They’ve been strong influences, along with other local printmakers that form a friendly and interactive community. And these days I think a lot about the old Italian poster artist Leonetto Cappiello, printmaker Delita Martin, and lots of people who make subversive public art.

Lino cut print – Drosophila

How do you make your art?

I use mostly screen printing, which involves using a squeegee to push ink onto paper through complex stencils supported by a fabric mesh. And I use other printmaking techniques – woodcut, linoleum cut, photogravure, intaglio – by standard and experimental methods, along with a little drawing and painting.

Still from the movie ‘Emergency’

Does your art influence your science at all, or are they separate worlds?

More and more I see ways that art influences my science, mostly in how I look at microscopy images and videos – and what I notice in them. And the converse is frequent: Science often influences my art. For years I’ve made gig posters for scientists’ talks. About two dozen of them just appeared in scenes of a movie called Emergency. And I’ve used Python programming to develop new ways for me to convert photos and drawings into patterns of dots that I can screen print.

Working with students, screen printing art onto windows of UNC’s Genome Science Building

What are you thinking of working on next?

I keep a long list of ideas in the Notes app on my iPhone, which helps me compartmentalise: I make art on weekends, and I set aside art ideas during the week when I’m focused on science. Only the Notes app knows what’s up next!

You can find more of Bob’s art on Instagram and his lab’s science at the Goldstein lab web site

Thanks to Bob and all the other SciArtists we have featured so far. You can find the full list here. We’re always on the lookout for new people to feature in this series – whatever kind of art you do, from sculpture to embroidery to music to drawing, if you want to share it with the community just email thenode@biologists.com (nominations are also welcome!)

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Genetics Unzipped – Genetics at your fingertips: stories from the science of identity

Posted by , on 30 June 2022

Dark skinned hand with gold fingertips against a black background.

“Pay more attention to your hands, because not only can they perform microscopic miracles, they can also tell you who you were before you were even born”

Dr Sally Le Page

In the latest episode of the Genetics Unzipped podcast, we’re looking at the stories at your fingertips. Presenter, Dr Sally Le Page, uncovers how excrement espionage could bring down a superpower, and unearths a 100 year old family secret. But it’s not just genetic fingerprinting we’re interested in. We also grasp the genetics of fingerprints, and what they tell us about our early life in the womb.

Genetics Unzipped is the podcast from The Genetics Society. Full transcript, links and references available online at GeneticsUnzipped.com.

Subscribe from Apple podcasts, Spotify, or wherever you get your podcasts.

Head over to GeneticsUnzipped.com to catch up on our extensive back catalogue.

If you enjoy the show, please do rate and review on Apple podcasts and help to spread the word on social media. And you can always send feedback and suggestions for future episodes and guests to podcast@geneticsunzipped.com Follow us on Twitter – @geneticsunzip

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